Wall clock time and date at job start Tue Mar 31 2020 05:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39086 * 120.56865 * 343.68767 * 3 2 1 5 5 C 1.39389 * 119.80271 * 180.29897 * 4 3 2 6 6 C 1.47988 * 119.49623 * 179.66562 * 5 4 3 7 7 C 1.39651 * 120.08957 * 0.02562 * 6 5 4 8 8 C 1.37949 * 120.02230 * 179.97438 * 7 6 5 9 9 C 1.38472 * 120.19163 * 359.97438 * 8 7 6 10 10 F 1.35095 * 119.91647 * 179.97438 * 9 8 7 11 11 C 1.39267 * 120.17341 * 0.02562 * 9 8 7 12 12 N 1.39845 * 120.01193 * 179.97438 * 11 9 8 13 13 C 1.38513 * 119.98261 * 359.74645 * 11 9 8 14 14 C 1.39994 * 121.00311 * 359.68536 * 5 4 3 15 15 C 1.35993 * 121.19414 * 359.97438 * 14 5 4 16 16 C 1.41048 * 120.10506 * 0.04284 * 15 14 5 17 17 C 1.40428 * 120.48860 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00501 * 205.39812 * 17 16 15 19 19 C 1.40290 * 119.99789 * 25.39829 * 17 16 15 20 20 N 1.30641 * 120.00352 * 16.91444 * 19 17 16 21 21 Si 1.86801 * 119.99713 * 196.91574 * 19 17 16 22 22 H 1.48504 * 109.47171 * 265.17564 * 21 19 17 23 23 H 1.48493 * 109.47651 * 25.17866 * 21 19 17 24 24 H 1.48505 * 109.47109 * 145.18170 * 21 19 17 25 25 H 1.07997 * 120.09476 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.98489 * 359.95347 * 7 6 5 27 27 H 1.07993 * 119.90539 * 180.02562 * 8 7 6 28 28 H 0.97000 * 119.99859 * 359.97438 * 12 11 9 29 29 H 0.96998 * 120.00126 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.10178 * 180.25595 * 13 11 9 31 31 H 1.08010 * 119.40606 * 179.97438 * 14 5 4 32 32 H 1.07997 * 119.95060 * 180.02562 * 15 14 5 33 33 H 0.97003 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2758 -1.1484 0.3364 5 6 4.6695 -1.1281 0.3372 6 6 5.4159 -2.3524 0.7034 7 6 4.7255 -3.5175 1.0444 8 6 5.4226 -4.6582 1.3850 9 6 6.8073 -4.6527 1.3897 10 9 7.4844 -5.7728 1.7246 11 6 7.5039 -3.4953 1.0509 12 7 8.9023 -3.4935 1.0572 13 6 6.8113 -2.3473 0.7032 14 6 5.3740 0.0329 -0.0027 15 6 4.7232 1.1770 -0.3448 16 6 3.3132 1.2109 -0.3613 17 6 2.6330 2.3880 -0.7128 18 1 1.6304 2.5612 -0.3503 19 6 3.2556 3.3392 -1.5348 20 7 4.3062 3.0080 -2.2372 21 14 2.5825 5.0794 -1.6250 22 1 1.6624 5.1948 -2.7849 23 1 1.8441 5.3901 -0.3747 24 1 3.7060 6.0369 -1.7873 25 1 2.7471 -2.0521 0.6012 26 1 3.6456 -3.5254 1.0418 27 1 4.8869 -5.5582 1.6480 28 1 9.3873 -4.2983 1.2979 29 1 9.3873 -2.6872 0.8216 30 1 7.3495 -1.4499 0.4361 31 1 6.4540 0.0199 0.0069 32 1 5.2868 2.0610 -0.6039 33 1 4.7369 3.6658 -2.8052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243454801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:31 Heat of formation + Delta-G solvation = 12.719827 kcal Electronic energy + Delta-G solvation = -19947.349949 eV Core-core repulsion = 16658.249833 eV Total energy + Delta-G solvation = -3289.100116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.43438 -39.05394 -37.54928 -35.24821 -34.74856 -33.91459 -31.36098 -30.17029 -29.07482 -28.08571 -25.55316 -23.11407 -22.38530 -21.56775 -20.34369 -18.06050 -17.51837 -17.11341 -16.87408 -15.84945 -15.50305 -15.24553 -14.82386 -14.71879 -14.01097 -13.58030 -13.43703 -13.07476 -12.88847 -12.64446 -12.47168 -12.32071 -12.02441 -11.77025 -11.65435 -11.38183 -11.22954 -11.13855 -10.84677 -10.77501 -10.30326 -10.07499 -9.78644 -9.63043 -8.65375 -7.87642 -7.59062 -7.35162 -7.10679 -4.83181 1.37782 1.82108 2.14387 2.61605 2.82488 2.87305 2.98520 3.56481 3.82034 3.90776 3.93008 4.31728 4.41794 4.66901 5.08970 5.25435 5.36208 5.45598 5.62209 5.70569 5.90283 6.01516 6.15176 6.34060 6.50573 6.53696 6.65372 6.67778 6.77641 6.99093 7.08507 7.14152 7.43481 7.54187 7.64292 7.69580 7.76570 7.81424 8.07947 8.24586 8.41434 8.73206 9.54805 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.004059 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.726760 B = 6896.971395 C = 7943.108479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.299 3.701 3 C -0.188 4.188 4 C 0.005 3.995 5 C -0.208 4.208 6 C 0.060 3.940 7 C -0.173 4.173 8 C -0.095 4.095 9 C -0.028 4.028 10 F -0.157 7.157 11 C 0.198 3.802 12 N -0.880 5.880 13 C -0.197 4.197 14 C -0.053 4.053 15 C -0.167 4.167 16 C 0.155 3.845 17 C -0.412 4.412 18 H 0.090 0.910 19 C 0.073 3.927 20 N -0.750 5.750 21 Si 0.917 3.083 22 H -0.263 1.263 23 H -0.254 1.254 24 H -0.268 1.268 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.397 0.603 29 H 0.399 0.601 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -4.661 2.856 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.011 4.011 3 C -0.194 4.194 4 C -0.016 4.016 5 C -0.210 4.210 6 C 0.059 3.941 7 C -0.192 4.192 8 C -0.114 4.114 9 C -0.051 4.051 10 F -0.136 7.136 11 C 0.094 3.906 12 N -0.420 5.420 13 C -0.220 4.220 14 C -0.072 4.072 15 C -0.186 4.186 16 C 0.149 3.851 17 C -0.438 4.438 18 H 0.108 0.892 19 C -0.152 4.152 20 N -0.371 5.371 21 Si 0.740 3.260 22 H -0.188 1.188 23 H -0.177 1.177 24 H -0.192 1.192 25 H 0.124 0.876 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.224 0.776 29 H 0.228 0.772 30 H 0.147 0.853 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.106 -4.605 2.672 8.879 hybrid contribution 0.801 0.516 -0.157 0.966 sum 7.906 -4.089 2.515 9.250 Atomic orbital electron populations 1.81037 1.12671 1.10067 1.14645 1.25734 0.92663 0.91512 0.91165 1.16780 0.83299 0.95844 1.23501 1.20651 0.92839 0.94953 0.93142 1.17737 0.91772 0.93396 1.18054 1.18707 0.91623 0.92634 0.91119 1.20862 0.99873 0.92123 1.06383 1.20723 0.91432 0.99252 0.99986 1.17064 0.90058 0.82627 1.15390 1.91356 1.80398 1.50386 1.91446 1.17611 0.84224 0.92945 0.95856 1.42298 1.02941 1.16812 1.79977 1.20513 0.93811 0.96809 1.10839 1.20511 0.97902 0.92518 0.96261 1.20906 0.93653 0.98149 1.05903 1.18522 0.91695 0.89268 0.85605 1.19904 1.01684 1.00111 1.22096 0.89234 1.26209 0.93933 1.01816 0.93199 1.69709 1.15329 1.36746 1.15288 0.86099 0.79874 0.79438 0.80612 1.18818 1.17691 1.19248 0.87637 0.85585 0.85708 0.77557 0.77249 0.85345 0.88370 0.85621 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.80 18.54 41.84 0.78 -11.02 16 2 C 0.30 6.77 14.29 -22.48 -0.32 6.45 16 3 C -0.19 -4.14 5.93 -104.26 -0.62 -4.76 16 4 C 0.00 0.10 9.12 -38.84 -0.35 -0.26 16 5 C -0.21 -3.97 5.88 -104.81 -0.62 -4.59 16 6 C 0.06 1.03 5.88 -104.89 -0.62 0.41 16 7 C -0.17 -2.71 9.41 -39.16 -0.37 -3.08 16 8 C -0.09 -1.39 10.00 -39.60 -0.40 -1.78 16 9 C -0.03 -0.43 7.32 -39.11 -0.29 -0.71 16 10 F -0.16 -2.32 16.63 2.25 0.04 -2.28 16 11 C 0.20 2.87 6.76 -83.72 -0.57 2.31 16 12 N -0.88 -9.79 9.09 32.44 0.29 -9.49 16 13 C -0.20 -3.06 9.26 -38.99 -0.36 -3.42 16 14 C -0.05 -1.03 9.30 -39.73 -0.37 -1.39 16 15 C -0.17 -3.59 8.62 -39.32 -0.34 -3.93 16 16 C 0.15 3.55 5.73 -104.61 -0.60 2.95 16 17 C -0.41 -9.51 8.55 -37.99 -0.32 -9.84 16 18 H 0.09 2.09 7.38 -52.49 -0.39 1.71 16 19 C 0.07 1.56 5.16 -17.29 -0.09 1.47 16 20 N -0.75 -16.12 10.96 55.57 0.61 -15.51 16 21 Si 0.92 16.14 29.59 -169.99 -5.03 11.11 16 22 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 23 H -0.25 -4.53 7.11 56.52 0.40 -4.13 16 24 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 25 H 0.11 1.84 6.12 -52.49 -0.32 1.52 16 26 H 0.13 1.83 6.14 -52.49 -0.32 1.51 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.40 3.92 8.31 -40.82 -0.34 3.58 16 29 H 0.40 3.60 8.84 -40.82 -0.36 3.24 16 30 H 0.13 1.83 6.13 -52.49 -0.32 1.51 16 31 H 0.10 1.66 6.09 -52.48 -0.32 1.34 16 32 H 0.13 2.73 6.20 -52.49 -0.33 2.40 16 33 H 0.29 5.62 8.29 -40.82 -0.34 5.28 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -24.88 298.89 -7.29 -32.17 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -2.25 Total: 10.69 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -6.23 Total: -20.16 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 1.68 Total: -36.03 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -24.88 -7.29 -32.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243454801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.887 kcal (2) G-P(sol) polarization free energy of solvation -24.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds