Wall clock time and date at job start Tue Mar 31 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39591 * 120.45441 * 42.81436 * 3 2 1 5 5 C 1.37709 * 120.18186 * 179.97438 * 4 3 2 6 6 C 1.39820 * 121.17296 * 0.02562 * 5 4 3 7 7 C 1.48306 * 119.53662 * 180.02562 * 6 5 4 8 8 C 1.39419 * 120.06691 * 180.02562 * 7 6 5 9 9 C 1.38038 * 120.03303 * 180.02562 * 8 7 6 10 10 C 1.38389 * 120.17829 * 359.95179 * 9 8 7 11 11 F 1.35098 * 119.93106 * 180.02562 * 10 9 8 12 12 C 1.39172 * 120.14009 * 0.04606 * 10 9 8 13 13 N 1.39861 * 120.02396 * 179.97438 * 12 10 9 14 14 C 1.38595 * 119.96438 * 359.70347 * 12 10 9 15 15 C 1.38621 * 120.92817 * 359.97438 * 6 5 4 16 16 C 1.40600 * 119.73009 * 359.75174 * 15 6 5 17 17 C 1.40836 * 120.55300 * 180.27762 * 16 15 6 18 18 H 1.08001 * 120.00556 * 204.62296 * 17 16 15 19 19 C 1.40238 * 120.00167 * 24.62619 * 17 16 15 20 20 N 1.30662 * 119.99669 * 17.33184 * 19 17 16 21 21 Si 1.86794 * 120.00153 * 197.33023 * 19 17 16 22 22 H 1.48494 * 109.47188 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47168 * 119.99886 * 21 19 17 24 24 H 1.48497 * 109.47368 * 239.99736 * 21 19 17 25 25 H 1.07994 * 119.90477 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.40907 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.98606 * 359.97438 * 8 7 6 28 28 H 1.08000 * 119.91423 * 179.97438 * 9 8 7 29 29 H 0.97006 * 119.99158 * 0.02562 * 13 12 10 30 30 H 0.96991 * 120.00733 * 179.97438 * 13 12 10 31 31 H 1.07997 * 120.09413 * 180.28143 * 14 12 10 32 32 H 1.08000 * 120.13394 * 180.02562 * 15 6 5 33 33 H 0.96995 * 120.00029 * 184.51427 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -0.8817 -0.8178 5 6 4.6530 -0.8760 -0.8137 6 6 5.3707 0.0044 0.0016 7 6 6.8533 -0.0200 -0.0232 8 6 7.5800 0.8526 0.7857 9 6 8.9599 0.8297 0.7616 10 6 9.6266 -0.0590 -0.0636 11 9 10.9773 -0.0776 -0.0828 12 6 8.9086 -0.9334 -0.8740 13 7 9.5848 -1.8302 -1.7074 14 6 7.5229 -0.9189 -0.8506 15 6 4.7158 0.9006 0.8321 16 6 3.3103 0.9316 0.8542 17 6 2.6273 1.8390 1.6870 18 1 1.6205 1.6214 2.0118 19 6 3.2544 3.0252 2.0947 20 7 4.3086 3.4596 1.4565 21 14 2.5826 3.9844 3.5501 22 1 1.3907 3.2865 4.0952 23 1 3.6252 4.0806 4.6032 24 1 2.1977 5.3489 3.1085 25 1 2.7422 -1.5708 -1.4554 26 1 5.1881 -1.5637 -1.4517 27 1 7.0630 1.5475 1.4308 28 1 9.5209 1.5068 1.3887 29 1 10.5547 -1.8430 -1.7204 30 1 9.0842 -2.4397 -2.2718 31 1 6.9636 -1.5996 -1.4753 32 1 5.2830 1.5752 1.4563 33 1 4.7811 4.2434 1.7775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243454906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:27 Heat of formation + Delta-G solvation = 14.885843 kcal Electronic energy + Delta-G solvation = -20176.592387 eV Core-core repulsion = 16887.586196 eV Total energy + Delta-G solvation = -3289.006191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.54869 -39.14326 -37.49362 -35.25068 -34.49379 -34.03446 -31.51382 -30.07293 -29.02943 -27.65186 -25.84505 -23.24820 -22.70849 -20.85381 -20.55343 -18.01093 -17.37291 -17.26574 -16.86994 -16.18388 -15.36659 -15.34592 -14.84620 -14.52165 -14.01057 -13.60392 -13.43969 -12.88297 -12.80575 -12.70933 -12.60098 -12.52889 -11.84031 -11.64287 -11.45545 -11.35646 -11.28835 -11.12152 -10.93380 -10.63076 -10.31366 -10.06213 -9.71525 -9.52924 -8.73474 -7.82758 -7.58589 -7.24692 -7.00316 -4.76051 1.16600 1.74957 2.34267 2.61078 2.91547 2.97428 3.02984 3.68088 3.84227 3.85922 3.89726 4.40706 4.42150 4.55553 5.04928 5.24355 5.37493 5.43878 5.58116 5.69080 5.87353 6.04088 6.16423 6.22078 6.47892 6.57820 6.65619 6.71720 6.87382 6.96518 7.03161 7.20696 7.42169 7.54793 7.61941 7.72394 7.75096 7.83769 8.15656 8.38223 8.48531 8.79896 9.71110 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.005148 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.560354 B = 5437.841655 C = 7003.813634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.300 3.700 3 C -0.185 4.185 4 C -0.029 4.029 5 C -0.234 4.234 6 C -0.024 4.024 7 C 0.021 3.979 8 C -0.138 4.138 9 C -0.106 4.106 10 C -0.004 4.004 11 F -0.153 7.153 12 C 0.185 3.815 13 N -0.880 5.880 14 C -0.171 4.171 15 C -0.136 4.136 16 C 0.147 3.853 17 C -0.427 4.427 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.763 5.763 21 Si 0.912 3.088 22 H -0.256 1.256 23 H -0.265 1.265 24 H -0.269 1.269 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.397 0.603 30 H 0.400 0.600 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -3.821 -1.399 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.010 4.010 3 C -0.191 4.191 4 C -0.050 4.050 5 C -0.253 4.253 6 C -0.025 4.025 7 C 0.020 3.980 8 C -0.158 4.158 9 C -0.125 4.125 10 C -0.027 4.027 11 F -0.132 7.132 12 C 0.081 3.919 13 N -0.420 5.420 14 C -0.193 4.193 15 C -0.155 4.155 16 C 0.142 3.858 17 C -0.454 4.454 18 H 0.105 0.895 19 C -0.146 4.146 20 N -0.386 5.386 21 Si 0.735 3.265 22 H -0.179 1.179 23 H -0.190 1.190 24 H -0.194 1.194 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.147 0.853 29 H 0.225 0.775 30 H 0.228 0.772 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.851 -3.548 -1.424 10.567 hybrid contribution 0.724 0.285 0.287 0.829 sum 10.575 -3.264 -1.137 11.125 Atomic orbital electron populations 1.81021 1.12769 1.12562 1.12559 1.25805 0.92743 0.91109 0.91338 1.16990 0.83239 1.09936 1.08938 1.20375 0.93596 0.95565 0.95457 1.20131 0.92997 1.05131 1.07067 1.18469 0.89488 0.96836 0.97730 1.18908 0.93317 0.92779 0.93019 1.21086 0.92270 1.00964 1.01476 1.20821 0.95030 0.98091 0.98561 1.17149 0.76249 1.03830 1.05490 1.91378 1.29340 1.96338 1.96176 1.17610 0.91813 0.90810 0.91683 1.42271 1.08969 1.42363 1.48444 1.20618 0.90497 1.03652 1.04566 1.21473 0.93737 0.99248 1.01043 1.18360 0.91226 0.88682 0.87525 1.19821 1.01609 1.00833 1.23173 0.89545 1.26084 0.94409 0.97256 0.96864 1.69716 1.15189 1.20503 1.33167 0.86148 0.80545 0.79379 0.80388 1.17922 1.19002 1.19434 0.88184 0.88162 0.84439 0.85274 0.77470 0.77205 0.84957 0.84851 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.18 18.54 41.84 0.78 -11.41 16 2 C 0.30 6.94 14.28 -22.47 -0.32 6.62 16 3 C -0.18 -4.15 5.95 -104.12 -0.62 -4.77 16 4 C -0.03 -0.58 9.74 -39.27 -0.38 -0.96 16 5 C -0.23 -4.39 9.37 -39.18 -0.37 -4.76 16 6 C -0.02 -0.48 5.86 -105.02 -0.62 -1.09 16 7 C 0.02 0.36 5.87 -104.91 -0.62 -0.26 16 8 C -0.14 -2.28 9.41 -39.22 -0.37 -2.65 16 9 C -0.11 -1.57 10.00 -39.60 -0.40 -1.96 16 10 C 0.00 -0.05 7.31 -39.18 -0.29 -0.34 16 11 F -0.15 -2.20 16.63 2.25 0.04 -2.17 16 12 C 0.18 2.60 6.76 -83.72 -0.57 2.03 16 13 N -0.88 -9.28 9.09 32.44 0.30 -8.99 16 14 C -0.17 -2.59 9.26 -39.05 -0.36 -2.95 16 15 C -0.14 -2.97 8.06 -38.55 -0.31 -3.28 16 16 C 0.15 3.46 5.73 -104.68 -0.60 2.86 16 17 C -0.43 -10.16 8.58 -37.85 -0.32 -10.49 16 18 H 0.09 2.10 7.37 -52.49 -0.39 1.72 16 19 C 0.08 1.68 5.16 -17.30 -0.09 1.59 16 20 N -0.76 -16.77 10.95 55.56 0.61 -16.17 16 21 Si 0.91 16.77 29.60 -169.99 -5.03 11.73 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 24 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 25 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.10 1.61 6.09 -52.49 -0.32 1.29 16 27 H 0.14 2.30 6.14 -52.49 -0.32 1.98 16 28 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.40 3.71 8.31 -40.82 -0.34 3.37 16 30 H 0.40 3.34 8.84 -40.82 -0.36 2.98 16 31 H 0.13 1.79 6.13 -52.49 -0.32 1.47 16 32 H 0.13 2.89 4.24 -52.49 -0.22 2.67 16 33 H 0.29 5.70 8.30 -40.82 -0.34 5.37 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -25.50 298.98 -7.29 -32.79 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.25 Total: 10.09 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -6.22 Total: -20.40 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.68 Total: -36.56 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.50 -7.29 -32.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243454906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.677 kcal (2) G-P(sol) polarization free energy of solvation -25.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds