Wall clock time and date at job start Tue Mar 31 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 120.83875 * 2 1 4 4 C 1.38289 * 119.37500 * 180.25373 * 3 2 1 5 5 N 1.31989 * 121.11818 * 359.74130 * 4 3 2 6 6 C 1.31869 * 121.83649 * 0.02562 * 5 4 3 7 7 F 1.35107 * 119.75203 * 180.02562 * 6 5 4 8 8 C 1.39888 * 120.83944 * 179.75412 * 2 1 3 9 9 C 1.47972 * 120.57397 * 0.02562 * 8 2 1 10 10 C 1.40008 * 119.49487 * 294.71696 * 9 8 2 11 11 C 1.35991 * 121.18515 * 179.97438 * 10 9 8 12 12 C 1.41048 * 120.11185 * 0.02562 * 11 10 9 13 13 C 1.40438 * 120.48851 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99934 * 205.40349 * 13 12 11 15 15 C 1.40301 * 119.99547 * 25.40162 * 13 12 11 16 16 N 1.30634 * 120.00426 * 16.91381 * 15 13 12 17 17 Si 1.86801 * 119.99411 * 196.91494 * 15 13 12 18 18 H 1.48504 * 109.47171 * 265.17357 * 17 15 13 19 19 H 1.48501 * 109.47611 * 25.17907 * 17 15 13 20 20 H 1.48504 * 109.47066 * 145.18363 * 17 15 13 21 21 C 1.46645 * 119.02755 * 0.26897 * 12 11 10 22 22 C 1.43199 * 120.56583 * 179.75148 * 21 12 11 23 23 N 6.90746 * 87.27236 * 206.62844 * 2 1 3 24 24 C 1.39079 * 118.87036 * 359.45052 * 21 12 11 25 25 H 1.08997 * 109.47114 * 270.24374 * 1 2 3 26 26 H 1.09000 * 109.47135 * 30.25049 * 1 2 3 27 27 H 1.09003 * 109.47072 * 150.24776 * 1 2 3 28 28 H 1.07998 * 120.31363 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.43936 * 179.76972 * 4 3 2 30 30 H 1.07999 * 119.40825 * 0.02562 * 10 9 8 31 31 H 1.08003 * 119.94375 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99881 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.10090 * 180.28431 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1886 0.0000 4 6 3.5990 1.1532 -0.0053 5 7 4.2521 0.0062 -0.0053 6 6 3.6227 -1.1526 -0.0008 7 9 4.3334 -2.3016 -0.0004 8 6 2.2241 -1.2011 0.0052 9 6 1.5161 -2.5004 0.0102 10 6 0.7384 -2.8574 1.1183 11 6 0.0728 -4.0426 1.1591 12 6 0.1577 -4.9395 0.0738 13 6 -0.5259 -6.1658 0.1078 14 1 -0.1677 -7.0001 -0.4769 15 6 -1.6743 -6.3069 0.9014 16 7 -2.2988 -5.2471 1.3411 17 14 -2.3102 -8.0105 1.3293 18 1 -3.3607 -8.4054 0.3568 19 1 -1.1913 -8.9853 1.2725 20 1 -2.8842 -7.9950 2.6988 21 6 0.9755 -4.5757 -1.0877 22 6 1.0892 -5.4638 -2.2053 23 7 1.1783 -6.1678 -3.0924 24 6 1.6338 -3.3506 -1.0882 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6955 2.1345 -0.0004 29 1 4.1537 2.0799 -0.0091 30 1 0.6651 -2.1790 1.9554 31 1 -0.5218 -4.2975 2.0239 32 1 -3.0929 -5.3448 1.8895 33 1 2.2377 -3.0605 -1.9353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243551016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:57 Heat of formation + Delta-G solvation = 24.360859 kcal Electronic energy + Delta-G solvation = -20565.919624 eV Core-core repulsion = 17277.324300 eV Total energy + Delta-G solvation = -3288.595323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.48429 -39.86977 -37.78674 -35.25463 -34.63365 -33.49297 -31.41220 -30.02556 -29.26855 -27.76716 -25.77955 -23.12572 -22.35543 -21.79067 -20.81509 -17.86571 -17.33031 -17.09369 -16.93907 -15.74628 -15.52900 -15.14841 -14.49273 -14.12343 -13.91128 -13.42506 -13.36062 -13.00830 -12.86153 -12.63181 -12.36870 -12.34676 -12.09413 -11.88215 -11.77442 -11.61401 -11.42108 -11.27845 -10.88409 -10.76656 -10.12386 -9.99809 -9.66460 -9.40149 -9.21534 -8.58726 -7.87084 -7.63612 -7.28748 -4.84683 1.15952 1.34636 2.11448 2.50732 2.84809 2.87591 2.94897 3.59631 3.79963 3.86509 3.89422 4.06395 4.36171 4.78483 4.88763 5.11425 5.15683 5.35762 5.40912 5.63273 5.75408 5.86078 5.90558 6.00341 6.04164 6.16366 6.35031 6.54365 6.57787 6.70902 6.88418 6.91122 7.10868 7.37016 7.54237 7.66081 7.74947 7.90174 8.10135 8.29067 8.43616 8.76335 9.59191 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.004995 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.918613 B = 5603.953085 C = 6243.082434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 C -0.187 4.187 4 C 0.113 3.887 5 N -0.523 5.523 6 C 0.300 3.700 7 F -0.108 7.108 8 C -0.063 4.063 9 C -0.209 4.209 10 C -0.048 4.048 11 C -0.164 4.164 12 C 0.157 3.843 13 C -0.418 4.418 14 H 0.089 0.911 15 C 0.075 3.925 16 N -0.754 5.754 17 Si 0.916 3.084 18 H -0.264 1.264 19 H -0.254 1.254 20 H -0.268 1.268 21 C -0.187 4.187 22 C 0.300 3.700 23 N -0.506 5.506 24 C 0.007 3.993 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.293 0.707 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 10.140 3.587 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.026 4.026 3 C -0.207 4.207 4 C -0.044 4.044 5 N -0.238 5.238 6 C 0.147 3.853 7 F -0.087 7.087 8 C -0.066 4.066 9 C -0.211 4.211 10 C -0.067 4.067 11 C -0.183 4.183 12 C 0.151 3.849 13 C -0.444 4.444 14 H 0.107 0.893 15 C -0.149 4.149 16 N -0.376 5.376 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.177 1.177 20 H -0.193 1.193 21 C -0.193 4.193 22 C -0.010 4.010 23 N -0.185 5.185 24 C -0.014 4.014 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.104 0.896 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.528 9.074 2.342 9.495 hybrid contribution -1.032 -0.495 0.581 1.284 sum 0.497 8.579 2.923 9.077 Atomic orbital electron populations 1.20822 0.89488 1.03650 1.03054 1.20470 0.97213 0.91126 0.93809 1.21949 0.95264 0.98722 1.04815 1.22303 0.91582 0.94238 0.96244 1.66864 1.42546 0.97965 1.16409 1.18484 0.86501 0.81525 0.98814 1.91613 1.78954 1.45047 1.93122 1.19558 0.90808 0.95196 1.01050 1.17347 1.10617 0.94408 0.98760 1.20328 0.94826 0.96221 0.95361 1.20877 1.03231 0.94958 0.99270 1.18484 0.86934 0.91692 0.87783 1.19850 1.06391 0.97826 1.20362 0.89345 1.26172 0.95989 0.99709 0.93034 1.69697 1.13895 1.31528 1.22439 0.86121 0.80022 0.81068 0.78918 1.18880 1.17738 1.19301 1.16703 1.15658 0.94660 0.92305 1.25730 0.91111 0.92104 0.92056 1.81030 1.13451 1.11152 1.12898 1.20432 0.94337 0.91172 0.95503 0.90460 0.91627 0.89521 0.84628 0.82454 0.88846 0.85536 0.89587 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.15 36.01 0.33 -1.11 16 2 C -0.02 -0.27 5.94 -103.94 -0.62 -0.88 16 3 C -0.19 -2.23 9.80 -39.49 -0.39 -2.61 16 4 C 0.11 1.43 11.17 -17.47 -0.20 1.23 16 5 N -0.52 -8.61 10.36 -13.22 -0.14 -8.75 16 6 C 0.30 5.39 8.37 -16.90 -0.14 5.25 16 7 F -0.11 -2.10 16.70 2.25 0.04 -2.06 16 8 C -0.06 -1.08 5.29 -104.65 -0.55 -1.64 16 9 C -0.21 -4.03 3.94 -104.81 -0.41 -4.44 16 10 C -0.05 -0.94 8.76 -39.73 -0.35 -1.28 16 11 C -0.16 -3.55 8.62 -39.32 -0.34 -3.89 16 12 C 0.16 3.64 5.73 -104.61 -0.60 3.04 16 13 C -0.42 -9.80 8.56 -37.98 -0.32 -10.13 16 14 H 0.09 2.12 7.38 -52.49 -0.39 1.73 16 15 C 0.08 1.62 5.16 -17.29 -0.09 1.53 16 16 N -0.75 -16.24 10.96 55.57 0.61 -15.63 16 17 Si 0.92 16.42 29.59 -169.99 -5.03 11.39 16 18 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 19 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 20 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 21 C -0.19 -4.23 5.93 -104.27 -0.62 -4.85 16 22 C 0.30 7.00 14.29 -22.47 -0.32 6.68 16 23 N -0.51 -12.18 18.54 41.84 0.78 -11.40 16 24 C 0.01 0.13 9.24 -38.84 -0.36 -0.22 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 27 H 0.09 1.29 7.06 -51.93 -0.37 0.92 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.77 6.20 -52.48 -0.33 2.44 16 32 H 0.29 5.61 8.29 -40.82 -0.34 5.27 16 33 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -25.58 304.84 -6.88 -32.46 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -2.75 Total: 2.71 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -4.98 Total: -13.31 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 1.25 Total: -35.78 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.58 -6.88 -32.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243551016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.822 kcal (2) G-P(sol) polarization free energy of solvation -25.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds