Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38499 * 120.83474 * 2 1 4 4 C 1.38211 * 119.35383 * 180.27548 * 3 2 1 5 5 N 1.31967 * 121.07253 * 359.72303 * 4 3 2 6 6 C 1.31903 * 121.82058 * 0.02562 * 5 4 3 7 7 F 1.35100 * 119.73884 * 180.02562 * 6 5 4 8 8 C 1.39677 * 120.82823 * 179.75383 * 2 1 3 9 9 C 1.48277 * 120.55324 * 359.97438 * 8 2 1 10 10 C 1.39836 * 119.53852 * 294.72109 * 9 8 2 11 11 C 1.37701 * 121.17134 * 179.97438 * 10 9 8 12 12 C 1.39582 * 120.18695 * 0.02562 * 11 10 9 13 13 C 1.43202 * 120.45555 * 179.97438 * 12 11 10 14 14 N 7.64919 * 70.00270 * 178.81257 * 2 1 3 15 15 C 1.46541 * 119.09338 * 0.25819 * 12 11 10 16 16 C 1.40837 * 120.55726 * 179.74302 * 15 12 11 17 17 H 1.08007 * 119.99888 * 330.05252 * 16 15 12 18 18 C 1.40234 * 120.00390 * 150.05021 * 16 15 12 19 19 N 1.30666 * 120.00250 * 161.80866 * 18 16 15 20 20 Si 1.86803 * 119.99674 * 341.81599 * 18 16 15 21 21 H 1.48503 * 109.47113 * 95.39627 * 20 18 16 22 22 H 1.48501 * 109.46955 * 215.39315 * 20 18 16 23 23 H 1.48491 * 109.47285 * 335.39594 * 20 18 16 24 24 C 1.38620 * 119.54145 * 114.70185 * 9 8 2 25 25 H 1.08991 * 109.47217 * 270.25242 * 1 2 3 26 26 H 1.09000 * 109.46853 * 30.24993 * 1 2 3 27 27 H 1.09000 * 109.46855 * 150.24506 * 1 2 3 28 28 H 1.08008 * 120.32491 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.46326 * 179.74343 * 4 3 2 30 30 H 1.08003 * 119.41437 * 359.97438 * 10 9 8 31 31 H 1.07999 * 119.90980 * 180.02562 * 11 10 9 32 32 H 0.96996 * 119.99688 * 180.02562 * 19 18 16 33 33 H 1.08007 * 120.12599 * 0.04357 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1892 0.0000 4 6 3.5986 1.1535 -0.0058 5 7 4.2502 0.0060 -0.0058 6 6 3.6191 -1.1522 -0.0009 7 9 4.3285 -2.3020 -0.0007 8 6 2.2228 -1.1994 0.0052 9 6 1.5126 -2.5010 0.0113 10 6 0.7362 -2.8575 1.1184 11 6 0.0621 -4.0575 1.1595 12 6 0.1446 -4.9460 0.0861 13 6 -0.5536 -6.1957 0.1230 14 7 -1.1088 -7.1865 0.1490 15 6 0.9605 -4.5852 -1.0764 16 6 1.0698 -5.4608 -2.1741 17 1 0.9963 -6.5277 -2.0231 18 6 1.2740 -4.9475 -3.4630 19 7 1.7245 -5.7246 -4.4120 20 14 0.9020 -3.1527 -3.8233 21 1 2.1485 -2.3547 -3.7013 22 1 0.3658 -3.0254 -5.2022 23 1 -0.1037 -2.6511 -2.8527 24 6 1.6272 -3.3473 -1.0806 25 1 -0.3633 0.0045 1.0276 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6959 2.1353 0.0004 29 1 4.1539 2.0798 -0.0100 30 1 0.6640 -2.1796 1.9560 31 1 -0.5321 -4.3120 2.0246 32 1 1.8661 -5.3694 -5.3034 33 1 2.2307 -3.0592 -1.9287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243553183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = 28.935858 kcal Electronic energy + Delta-G solvation = -20961.921359 eV Core-core repulsion = 17673.524423 eV Total energy + Delta-G solvation = -3288.396937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.64829 -40.11890 -37.98860 -35.40180 -34.41209 -33.71115 -31.79906 -30.82873 -29.12861 -27.77334 -25.73733 -24.05981 -22.14455 -21.73466 -20.97932 -17.82952 -17.68164 -17.27808 -17.21372 -16.05837 -15.77525 -15.11829 -14.49854 -14.41737 -13.84807 -13.64898 -13.49541 -13.21861 -13.04713 -12.78644 -12.61024 -12.51762 -12.40347 -12.07578 -11.78495 -11.73610 -11.53956 -11.18030 -11.09817 -10.56637 -10.30888 -10.04056 -9.64691 -9.48190 -9.39172 -8.82256 -8.05602 -7.72958 -7.35696 -4.88905 0.92303 1.13987 1.78531 2.39579 2.88237 2.96783 3.05844 3.60044 3.66595 3.70266 3.78778 3.87103 4.34155 4.56362 4.69891 4.84579 4.97565 5.16028 5.22507 5.44323 5.50701 5.65895 5.68746 5.79162 5.82515 6.05036 6.12483 6.28100 6.32659 6.44154 6.69144 6.77907 6.87125 7.18595 7.28386 7.43688 7.62817 7.72511 7.91724 8.18654 8.32869 8.67631 9.63381 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.007180 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.110300 B = 3898.770138 C = 4610.149782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.006 4.006 3 C -0.190 4.190 4 C 0.126 3.874 5 N -0.521 5.521 6 C 0.318 3.682 7 F -0.102 7.102 8 C -0.106 4.106 9 C 0.009 3.991 10 C -0.234 4.234 11 C -0.014 4.014 12 C -0.165 4.165 13 C 0.295 3.705 14 N -0.495 5.495 15 C 0.126 3.874 16 C -0.410 4.410 17 H 0.100 0.900 18 C 0.083 3.917 19 N -0.771 5.771 20 Si 0.907 3.093 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.235 1.235 24 C -0.206 4.206 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.295 0.705 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 15.686 4.720 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.014 4.014 3 C -0.210 4.210 4 C -0.031 4.031 5 N -0.236 5.236 6 C 0.165 3.835 7 F -0.081 7.081 8 C -0.109 4.109 9 C 0.007 3.993 10 C -0.253 4.253 11 C -0.035 4.035 12 C -0.170 4.170 13 C -0.015 4.015 14 N -0.174 5.174 15 C 0.120 3.880 16 C -0.437 4.437 17 H 0.118 0.882 18 C -0.142 4.142 19 N -0.391 5.391 20 Si 0.732 3.268 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.158 1.158 24 C -0.225 4.225 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.180 0.820 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.301 13.957 4.469 14.658 hybrid contribution -0.293 0.812 -0.429 0.964 sum 0.009 14.768 4.040 15.311 Atomic orbital electron populations 1.20895 0.89275 1.03923 1.03381 1.20358 0.97324 0.90904 0.92791 1.21969 0.95308 0.98732 1.04979 1.22417 0.91642 0.94383 0.94618 1.66958 1.42266 0.97850 1.16530 1.18273 0.86090 0.81863 0.97282 1.91660 1.78911 1.44660 1.92836 1.19775 0.91649 0.95536 1.03961 1.18048 0.95926 0.90127 0.95165 1.20005 1.07366 0.99010 0.98933 1.20475 0.95541 0.92358 0.95119 1.16897 1.07962 0.91704 1.00483 1.25665 0.91879 0.92421 0.91533 1.81047 1.13537 1.12236 1.10555 1.18322 0.87778 0.90642 0.91216 1.19684 1.37100 0.96682 0.90188 0.88239 1.26384 0.90718 1.01219 0.95861 1.69592 1.26386 1.39207 1.03951 0.86340 0.81138 0.80889 0.78441 1.18964 1.20886 1.15765 1.20961 1.06151 0.96607 0.98817 0.89939 0.91133 0.89649 0.84126 0.81978 0.87855 0.87424 0.89420 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.15 36.01 0.33 -1.02 16 2 C -0.01 -0.08 5.93 -103.99 -0.62 -0.70 16 3 C -0.19 -2.08 9.80 -39.50 -0.39 -2.46 16 4 C 0.13 1.50 11.17 -17.50 -0.20 1.30 16 5 N -0.52 -8.34 10.36 -13.30 -0.14 -8.48 16 6 C 0.32 5.67 8.37 -16.97 -0.14 5.53 16 7 F -0.10 -1.99 16.69 2.25 0.04 -1.95 16 8 C -0.11 -1.79 5.29 -104.68 -0.55 -2.35 16 9 C 0.01 0.17 3.92 -105.03 -0.41 -0.24 16 10 C -0.23 -4.07 8.83 -39.18 -0.35 -4.41 16 11 C -0.01 -0.26 9.74 -39.28 -0.38 -0.64 16 12 C -0.16 -3.54 5.95 -104.12 -0.62 -4.16 16 13 C 0.30 6.68 14.35 -22.47 -0.32 6.35 16 14 N -0.50 -11.69 18.54 41.84 0.78 -10.91 16 15 C 0.13 2.91 5.27 -104.68 -0.55 2.36 16 16 C -0.41 -10.30 9.02 -37.85 -0.34 -10.64 16 17 H 0.10 2.72 7.65 -52.48 -0.40 2.32 16 18 C 0.08 2.00 5.41 -17.30 -0.09 1.90 16 19 N -0.77 -18.99 13.92 55.56 0.77 -18.22 16 20 Si 0.91 18.76 24.53 -169.99 -4.17 14.59 16 21 H -0.26 -5.39 6.71 56.52 0.38 -5.02 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.23 -4.76 6.85 56.52 0.39 -4.38 16 24 C -0.21 -4.44 6.65 -38.55 -0.26 -4.69 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.08 1.16 7.06 -51.93 -0.37 0.80 16 28 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 33 H 0.11 2.40 4.74 -52.48 -0.25 2.15 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -27.25 299.78 -5.81 -33.07 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.72 Total: 1.25 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -4.89 Total: -13.87 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 1.41 Total: -37.61 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.17 Total: 14.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.25 -5.81 -33.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243553183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.003 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds