Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00073 * 2 1 4 4 H 1.48498 * 109.46869 * 269.99420 * 3 2 1 5 5 H 1.48502 * 109.47032 * 29.99555 * 3 2 1 6 6 H 1.48502 * 109.46853 * 149.99578 * 3 2 1 7 7 C 1.38648 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99560 * 0.02562 * 7 2 1 9 9 O 1.34812 * 120.00636 * 180.02562 * 7 2 1 10 10 C 1.35665 * 117.00564 * 185.10408 * 9 7 2 11 11 C 1.38757 * 120.13061 * 354.39683 * 10 9 7 12 12 C 1.38109 * 120.04728 * 179.97438 * 11 10 9 13 13 C 1.38443 * 120.32546 * 359.97438 * 12 11 10 14 14 C 1.38022 * 120.26987 * 359.73838 * 13 12 11 15 15 C 1.39280 * 119.94216 * 0.53207 * 14 13 12 16 16 C 1.48291 * 120.15976 * 179.74613 * 15 14 13 17 17 C 1.39502 * 120.16887 * 65.03259 * 16 15 14 18 18 C 1.37986 * 119.89184 * 180.27076 * 17 16 15 19 19 C 1.38424 * 120.18650 * 359.43922 * 18 17 16 20 20 C 1.38061 * 120.18374 * 0.26886 * 19 18 17 21 21 C 1.38394 * 120.11378 * 0.02562 * 20 19 18 22 22 C 1.51065 * 107.33671 * 180.02562 * 21 20 19 23 23 O 1.43947 * 105.93973 * 342.33714 * 22 21 20 24 24 C 1.43944 * 104.92188 * 28.39719 * 23 22 21 25 25 H 0.97001 * 119.99848 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.97726 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.83726 * 179.97438 * 12 11 10 28 28 H 1.07997 * 119.86799 * 179.97438 * 13 12 11 29 29 H 1.07999 * 120.02790 * 180.25013 * 14 13 12 30 30 H 1.08001 * 120.05143 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.90329 * 179.70521 * 18 17 16 32 32 H 1.07997 * 119.90648 * 180.25237 * 19 18 17 33 33 H 1.09003 * 110.16107 * 223.21241 * 22 21 20 34 34 H 1.09002 * 110.21302 * 101.48180 * 22 21 20 35 35 H 1.08993 * 110.15755 * 212.46498 * 24 23 22 36 36 H 1.09007 * 110.14935 * 90.71021 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3570 -1.2008 0.0011 10 6 3.9729 -2.4048 -0.1060 11 6 3.2250 -3.5735 -0.0927 12 6 3.8537 -4.7982 -0.2023 13 6 5.2308 -4.8684 -0.3264 14 6 5.9872 -3.7141 -0.3470 15 6 5.3652 -2.4732 -0.2315 16 6 6.1737 -1.2302 -0.2474 17 6 6.8803 -0.8681 -1.3945 18 6 7.6353 0.2869 -1.4012 19 6 7.6842 1.0929 -0.2769 20 6 6.9823 0.7429 0.8593 21 6 6.2267 -0.4164 0.8790 22 6 5.5895 -0.5153 2.2451 23 8 6.3363 0.3748 3.0950 24 6 6.8354 1.3973 2.2133 25 1 -0.4850 0.8401 -0.0004 26 1 2.1503 -3.5253 0.0033 27 1 3.2683 -5.7057 -0.1913 28 1 5.7149 -5.8301 -0.4112 29 1 7.0608 -3.7732 -0.4479 30 1 6.8402 -1.4932 -2.2743 31 1 8.1861 0.5650 -2.2875 32 1 8.2733 1.9980 -0.2884 33 1 5.6580 -1.5370 2.6186 34 1 4.5465 -0.2023 2.1977 35 1 7.8030 1.7562 2.5640 36 1 6.1260 2.2231 2.1564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = -10.861100 kcal Electronic energy + Delta-G solvation = -21892.211908 eV Core-core repulsion = 18693.256799 eV Total energy + Delta-G solvation = -3198.955108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46132 -39.13631 -37.15320 -36.45140 -32.64811 -32.29663 -31.02657 -29.53998 -28.85635 -27.31125 -25.32253 -24.48162 -22.57345 -21.54047 -21.01619 -20.17836 -17.93535 -17.41547 -16.26018 -16.07538 -15.90488 -15.32727 -14.93058 -14.74261 -14.14891 -13.87623 -13.81598 -13.46204 -13.40074 -12.80917 -12.56681 -12.38022 -12.31059 -12.23114 -11.79879 -11.49200 -11.25760 -11.11132 -10.86531 -10.83197 -10.58880 -10.23876 -9.76978 -9.47651 -8.95182 -8.67275 -8.28537 -8.07101 -7.41787 -6.49508 -4.15875 1.43424 1.53370 2.04057 2.19390 3.16726 3.21306 3.35031 3.90940 4.16940 4.17916 4.38888 4.49343 4.72980 4.94074 5.01610 5.03964 5.22439 5.46991 5.51251 5.51969 5.59402 5.68927 5.72400 5.87460 5.92001 6.02765 6.14189 6.22889 6.25023 6.42374 6.51991 6.58768 6.67140 6.74841 6.94698 7.01500 7.06909 7.20233 7.23583 7.51331 7.70962 7.94868 8.85789 9.46993 10.57774 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.011464 B = 0.009748 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.913149 B = 2871.726975 C = 4284.389457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.205 6.205 10 C 0.174 3.826 11 C -0.221 4.221 12 C -0.070 4.070 13 C -0.206 4.206 14 C -0.060 4.060 15 C -0.140 4.140 16 C 0.016 3.984 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.104 4.104 20 C -0.139 4.139 21 C -0.101 4.101 22 C 0.090 3.910 23 O -0.366 6.366 24 C 0.094 3.906 25 H 0.280 0.720 26 H 0.136 0.864 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.272 -0.967 -0.371 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.109 6.109 10 C 0.120 3.880 11 C -0.240 4.240 12 C -0.088 4.088 13 C -0.225 4.225 14 C -0.078 4.078 15 C -0.142 4.142 16 C 0.015 3.985 17 C -0.124 4.124 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.139 4.139 21 C -0.101 4.101 22 C 0.014 3.986 23 O -0.285 6.285 24 C 0.017 3.983 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.157 -0.599 -0.097 13.171 hybrid contribution -0.079 0.670 -0.393 0.780 sum 13.078 0.071 -0.490 13.087 Atomic orbital electron populations 1.69636 1.05546 1.28573 1.47475 1.24413 0.94940 0.98649 0.95510 0.86316 0.80577 0.81755 0.79185 1.19882 1.20711 1.17934 1.20771 0.76838 0.96632 1.52388 0.87521 1.83580 1.22507 1.25431 1.79381 1.19045 0.90470 0.85732 0.92703 1.21252 1.01215 0.91738 1.09820 1.20886 0.94347 0.96755 0.96796 1.20595 0.93978 0.97301 1.10658 1.20688 0.98533 0.90791 0.97770 1.17815 0.90024 0.92299 1.14040 1.17932 0.95390 0.93388 0.91742 1.21218 0.97056 0.97075 0.97096 1.20950 0.99944 0.95125 0.97823 1.20277 0.99984 0.99951 0.92048 1.20967 0.99435 0.96760 0.96740 1.20951 0.97407 0.95435 0.96308 1.21813 0.95854 0.95094 0.85825 1.89021 1.70607 1.38583 1.30251 1.21686 0.99666 0.91103 0.85840 0.90955 0.84688 0.87079 0.87191 0.86746 0.85573 0.85780 0.86258 0.88721 0.89305 0.88994 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.96 55.48 0.77 -24.07 16 2 C 0.07 1.89 5.49 -17.52 -0.10 1.80 16 3 Si 0.90 21.56 28.62 -169.99 -4.86 16.70 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -10.63 9.95 30.88 0.31 -10.32 16 8 H 0.11 2.96 5.44 -52.48 -0.29 2.68 16 9 O -0.20 -5.15 7.67 0.36 0.00 -5.15 16 10 C 0.17 3.86 6.62 -38.74 -0.26 3.60 16 11 C -0.22 -4.59 9.16 -39.44 -0.36 -4.95 16 12 C -0.07 -1.21 10.03 -39.55 -0.40 -1.60 16 13 C -0.21 -3.31 10.03 -39.59 -0.40 -3.71 16 14 C -0.06 -1.00 9.73 -39.27 -0.38 -1.38 16 15 C -0.14 -2.73 5.19 -104.73 -0.54 -3.28 16 16 C 0.02 0.29 4.94 -104.98 -0.52 -0.23 16 17 C -0.11 -1.73 9.75 -39.20 -0.38 -2.11 16 18 C -0.12 -1.71 10.03 -39.61 -0.40 -2.11 16 19 C -0.10 -1.52 10.04 -39.58 -0.40 -1.91 16 20 C -0.14 -2.33 6.32 -104.43 -0.66 -2.99 16 21 C -0.10 -1.91 5.83 -104.08 -0.61 -2.52 16 22 C 0.09 1.71 7.45 36.18 0.27 1.98 16 23 O -0.37 -6.56 11.72 -35.23 -0.41 -6.98 16 24 C 0.09 1.44 7.63 36.21 0.28 1.72 16 25 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.14 2.93 5.64 -52.48 -0.30 2.64 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.09 1.88 8.02 -51.93 -0.42 1.46 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -29.41 311.65 -8.28 -37.69 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.94 Total: 5.12 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -4.54 Total: -28.01 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.77 Total: -24.07 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.41 Total: -12.13 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.86 Total: 16.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.41 -8.28 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.828 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds