Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86804 * 119.99740 * 2 1 4 4 H 1.48495 * 109.47076 * 270.00528 * 3 2 1 5 5 H 1.48507 * 109.46769 * 30.00736 * 3 2 1 6 6 H 1.48497 * 109.46564 * 150.00171 * 3 2 1 7 7 C 1.38635 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00290 * 359.97438 * 7 2 1 9 9 O 1.34812 * 120.00229 * 179.97438 * 7 2 1 10 10 C 1.35700 * 117.00374 * 185.05564 * 9 7 2 11 11 C 1.39000 * 119.94726 * 354.44818 * 10 9 7 12 12 C 1.37834 * 120.05503 * 179.97438 * 11 10 9 13 13 C 1.39449 * 119.94804 * 359.97438 * 12 11 10 14 14 C 1.48299 * 120.05405 * 179.97438 * 13 12 11 15 15 C 1.39439 * 120.24867 * 0.02562 * 14 13 12 16 16 C 1.37664 * 120.22108 * 180.44701 * 15 14 13 17 17 C 1.39424 * 120.40492 * 359.53393 * 16 15 14 18 18 C 1.39015 * 119.07893 * 0.15854 * 17 16 15 19 19 C 1.37511 * 120.90815 * 0.18248 * 18 17 16 20 20 C 1.51674 * 107.02539 * 180.44389 * 18 17 16 21 21 C 1.54703 * 101.91663 * 15.49764 * 20 18 17 22 22 O 1.36167 * 129.72909 * 179.54486 * 17 16 15 23 23 C 1.39448 * 119.89156 * 0.28001 * 13 12 11 24 24 C 1.37841 * 119.94532 * 359.44443 * 23 13 12 25 25 H 0.97003 * 120.00658 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.96739 * 359.95872 * 11 10 9 27 27 H 1.08007 * 120.02290 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.88641 * 0.16329 * 15 14 13 29 29 H 1.08008 * 119.79402 * 179.76596 * 16 15 14 30 30 H 1.08004 * 120.05788 * 179.76766 * 19 18 17 31 31 H 1.09002 * 110.93797 * 133.65540 * 20 18 17 32 32 H 1.08998 * 110.93597 * 257.30326 * 20 18 17 33 33 H 1.08993 * 110.74471 * 92.97068 * 21 20 18 34 34 H 1.09006 * 110.74063 * 216.12671 * 21 20 18 35 35 H 1.07999 * 120.02927 * 179.72057 * 23 13 12 36 36 H 1.07997 * 119.97303 * 180.27264 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3570 -1.2006 -0.0011 10 6 3.9731 -2.4049 -0.1081 11 6 3.2201 -3.5732 -0.0945 12 6 3.8435 -4.7976 -0.2036 13 6 5.2308 -4.8638 -0.3283 14 6 5.9041 -6.1799 -0.4453 15 6 5.1549 -7.3559 -0.4318 16 6 5.7812 -8.5777 -0.5312 17 6 7.1679 -8.6518 -0.6559 18 6 7.9083 -7.4753 -0.6751 19 6 7.2916 -6.2508 -0.5694 20 6 9.3647 -7.8697 -0.8298 21 6 9.2498 -9.3425 -1.2891 22 8 7.9755 -9.7433 -0.7582 23 6 5.9846 -3.6906 -0.3364 24 6 5.3561 -2.4682 -0.2327 25 1 -0.4851 0.8400 0.0004 26 1 2.1456 -3.5214 0.0020 27 1 3.2579 -5.7051 -0.1933 28 1 4.0800 -7.3081 -0.3384 29 1 5.1944 -9.4844 -0.5162 30 1 7.8806 -5.3456 -0.5821 31 1 9.8543 -7.2614 -1.5903 32 1 9.8909 -7.7978 0.1220 33 1 9.2531 -9.4090 -2.3770 34 1 10.0543 -9.9432 -0.8646 35 1 7.0596 -3.7395 -0.4283 36 1 5.9390 -1.5592 -0.2434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -7.112410 kcal Electronic energy + Delta-G solvation = -20232.768285 eV Core-core repulsion = 17033.975732 eV Total energy + Delta-G solvation = -3198.792553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07362 -39.33608 -37.86698 -36.13146 -32.81086 -32.52069 -31.16295 -30.57147 -29.16238 -27.67643 -25.38021 -23.66469 -22.65036 -22.41384 -21.14171 -20.25658 -18.01337 -17.64828 -17.27364 -16.63670 -16.31328 -15.61308 -14.80548 -14.32459 -14.25606 -13.94362 -13.77156 -13.53714 -13.35089 -13.18103 -12.87863 -12.68734 -12.41549 -12.29666 -12.10764 -11.91090 -11.73320 -11.09022 -11.03875 -10.94400 -10.62297 -10.53833 -10.17281 -9.45857 -9.03178 -8.87477 -8.39951 -8.34884 -7.00219 -6.50745 -4.15727 1.06291 1.36332 2.06800 2.35759 3.16705 3.19779 3.21185 3.34776 3.78401 4.16413 4.27686 4.43968 4.53496 4.72903 4.77114 4.84861 5.02050 5.03658 5.19519 5.21138 5.31358 5.47515 5.52638 5.55420 5.63228 5.65821 6.00127 6.03270 6.16651 6.23226 6.39689 6.45300 6.58868 6.60054 6.72369 6.96488 7.15734 7.21471 7.24541 7.50067 7.71060 7.93997 8.83669 9.44806 10.56269 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.047632 B = 0.003081 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.694961 B = 9085.408255 C = 9638.156678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.210 6.210 10 C 0.164 3.836 11 C -0.221 4.221 12 C -0.057 4.057 13 C -0.145 4.145 14 C -0.027 4.027 15 C -0.095 4.095 16 C -0.128 4.128 17 C 0.079 3.921 18 C -0.168 4.168 19 C -0.080 4.080 20 C -0.110 4.110 21 C 0.052 3.948 22 O -0.309 6.309 23 C -0.062 4.062 24 C -0.192 4.192 25 H 0.281 0.719 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.666 -14.079 -1.998 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.115 6.115 10 C 0.111 3.889 11 C -0.240 4.240 12 C -0.075 4.075 13 C -0.146 4.146 14 C -0.027 4.027 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.035 3.965 18 C -0.169 4.169 19 C -0.098 4.098 20 C -0.147 4.147 21 C -0.023 4.023 22 O -0.224 6.224 23 C -0.080 4.080 24 C -0.211 4.211 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.486 -13.923 -1.920 20.914 hybrid contribution 0.215 0.771 -0.047 0.802 sum 15.702 -13.153 -1.968 20.577 Atomic orbital electron populations 1.69644 1.05619 1.28721 1.47145 1.24493 0.95053 0.98958 0.95467 0.86169 0.80355 0.81278 0.79066 1.19767 1.20668 1.18278 1.20810 0.76790 0.96777 1.52176 0.87416 1.83550 1.22761 1.25940 1.79208 1.19230 0.91719 0.85448 0.92519 1.21224 1.01263 0.91668 1.09856 1.20865 0.93125 0.96925 0.96581 1.18193 0.93061 0.90943 1.12367 1.18675 0.92169 0.92681 0.99195 1.20960 1.00104 0.90600 0.99595 1.20130 0.90146 0.98513 1.05834 1.19543 0.91772 0.85524 0.99690 1.20615 0.94847 0.93878 1.07548 1.20320 0.93732 0.95891 0.99833 1.21777 0.93956 0.95981 1.02960 1.23760 0.84579 0.94829 0.99120 1.86791 1.24370 1.30976 1.80238 1.20690 0.98413 0.91080 0.97843 1.20141 0.91914 0.97832 1.11208 0.90870 0.84636 0.86756 0.84889 0.85694 0.85673 0.89226 0.89336 0.90804 0.87929 0.86579 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.71 13.96 55.48 0.77 -23.94 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.13 28.62 -169.99 -4.86 16.27 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.39 -10.71 9.94 30.88 0.31 -10.41 16 8 H 0.11 3.01 5.42 -52.49 -0.28 2.72 16 9 O -0.21 -5.40 8.58 0.25 0.00 -5.40 16 10 C 0.16 3.67 6.65 -39.02 -0.26 3.41 16 11 C -0.22 -4.62 9.15 -39.45 -0.36 -4.98 16 12 C -0.06 -1.01 9.42 -39.28 -0.37 -1.38 16 13 C -0.14 -2.44 5.88 -104.86 -0.62 -3.05 16 14 C -0.03 -0.40 5.88 -104.85 -0.62 -1.02 16 15 C -0.09 -1.29 9.41 -39.34 -0.37 -1.66 16 16 C -0.13 -1.65 10.05 -39.35 -0.40 -2.04 16 17 C 0.08 1.05 7.04 -38.85 -0.27 0.78 16 18 C -0.17 -2.09 6.26 -104.12 -0.65 -2.74 16 19 C -0.08 -1.07 9.41 -39.38 -0.37 -1.44 16 20 C -0.11 -0.96 7.12 -26.51 -0.19 -1.15 16 21 C 0.05 0.44 8.01 38.05 0.30 0.74 16 22 O -0.31 -3.81 11.10 -20.27 -0.23 -4.04 16 23 C -0.06 -1.04 9.42 -39.28 -0.37 -1.41 16 24 C -0.19 -3.67 9.98 -39.44 -0.39 -4.07 16 25 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.14 2.96 5.62 -52.49 -0.30 2.66 16 27 H 0.11 1.72 6.21 -52.48 -0.33 1.39 16 28 H 0.13 1.61 6.20 -52.49 -0.33 1.28 16 29 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.13 1.47 6.22 -52.48 -0.33 1.14 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 1.57 6.21 -52.49 -0.33 1.25 16 36 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -29.85 305.57 -7.98 -37.83 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.55 Total: 3.41 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -4.72 Total: -28.74 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.77 Total: -23.94 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.22 Total: -9.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.86 Total: 16.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.85 -7.98 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.722 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds