Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86793 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47510 * 239.99637 * 3 2 1 5 5 H 1.48504 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47176 * 119.99684 * 3 2 1 7 7 C 1.38641 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00147 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00683 * 0.02562 * 7 2 1 10 10 C 1.35690 * 117.00204 * 185.05870 * 9 7 2 11 11 C 1.39001 * 119.95118 * 354.45117 * 10 9 7 12 12 C 1.37832 * 120.05079 * 179.74779 * 11 10 9 13 13 C 1.39435 * 119.95011 * 0.25180 * 12 11 10 14 14 C 1.48322 * 120.05136 * 180.02562 * 13 12 11 15 15 C 1.39483 * 120.16703 * 310.00156 * 14 13 12 16 16 C 1.37992 * 119.89574 * 179.97438 * 15 14 13 17 17 C 1.38425 * 120.18390 * 359.97438 * 16 15 14 18 18 C 1.38052 * 120.18394 * 0.02562 * 17 16 15 19 19 C 1.38413 * 120.11032 * 359.75333 * 18 17 16 20 20 C 1.51067 * 107.33384 * 179.87763 * 19 18 17 21 21 O 1.43948 * 106.00028 * 342.67175 * 20 19 18 22 22 C 1.43946 * 104.91795 * 28.20950 * 21 20 19 23 23 C 1.39438 * 119.89747 * 359.97438 * 13 12 11 24 24 C 1.37838 * 119.94567 * 0.02562 * 23 13 12 25 25 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.96899 * 0.02562 * 11 10 9 27 27 H 1.08002 * 120.02279 * 180.23304 * 12 11 10 28 28 H 1.07997 * 120.05274 * 359.97438 * 15 14 13 29 29 H 1.08001 * 119.91179 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.91020 * 180.02562 * 17 16 15 31 31 H 1.08996 * 110.29255 * 223.44646 * 20 19 18 32 32 H 1.08995 * 110.01744 * 101.75238 * 20 19 18 33 33 H 1.09002 * 110.15150 * 212.45531 * 22 21 20 34 34 H 1.08997 * 110.15140 * 90.70995 * 22 21 20 35 35 H 1.07995 * 120.02716 * 179.97438 * 23 13 12 36 36 H 1.07998 * 119.97266 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1034 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6965 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0698 -3.5039 0.1077 11 6 3.4580 -3.4359 0.0947 12 6 4.2066 -4.5876 0.2086 13 6 3.5703 -5.8221 0.3317 14 6 4.3737 -7.0628 0.4550 15 6 5.4047 -7.3228 -0.4477 16 6 6.1490 -8.4786 -0.3275 17 6 5.8754 -9.3802 0.6867 18 6 4.8562 -9.1283 1.5831 19 6 4.1065 -7.9699 1.4745 20 6 3.0830 -7.9904 2.5854 21 8 3.0191 -9.3543 3.0410 22 6 4.3247 -9.8969 2.7705 23 6 2.1775 -5.8884 0.3397 24 6 1.4331 -4.7340 0.2255 25 1 -0.4850 0.8400 -0.0004 26 1 3.9504 -2.4793 -0.0002 27 1 5.2853 -4.5338 0.2023 28 1 5.6203 -6.6207 -1.2395 29 1 6.9471 -8.6804 -1.0265 30 1 6.4609 -10.2832 0.7770 31 1 2.1101 -7.6741 2.2090 32 1 3.4012 -7.3374 3.3980 33 1 4.2480 -10.9568 2.5281 34 1 4.9765 -9.7544 3.6325 35 1 1.6825 -6.8435 0.4345 36 1 0.3543 -4.7848 0.2321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = -32.229219 kcal Electronic energy + Delta-G solvation = -20604.795336 eV Core-core repulsion = 17404.913636 eV Total energy + Delta-G solvation = -3199.881699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72239 -40.69401 -38.76428 -37.74658 -34.41603 -33.20334 -32.39626 -31.80880 -29.83862 -28.55026 -27.29343 -25.67393 -23.76565 -23.48601 -22.30616 -21.43635 -19.91050 -18.92012 -17.65121 -17.28781 -17.23858 -16.51315 -16.41257 -16.17478 -15.86536 -15.56579 -15.21536 -14.79053 -14.61324 -14.41536 -14.17410 -13.79785 -13.54428 -13.45271 -13.14549 -13.04400 -12.86208 -12.56162 -12.44797 -12.17959 -12.14148 -11.71583 -11.25776 -11.07622 -10.83585 -9.89358 -9.88629 -9.51833 -8.77219 -8.49399 -6.17465 0.04905 0.30089 0.53076 0.83533 1.35219 1.45892 1.51478 2.16580 2.64131 2.83715 2.95362 3.14000 3.27340 3.45267 3.67871 3.75699 4.04483 4.08243 4.19726 4.29903 4.40001 4.45640 4.48160 4.56808 4.59848 4.69151 4.74610 4.92532 4.94149 5.01181 5.09792 5.20336 5.33827 5.43006 5.47016 5.54770 5.64178 5.69250 5.78636 5.99082 6.00277 6.11200 6.94822 7.73362 8.73194 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.030896 B = 0.003582 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.057794 B = 7814.132266 C = 8323.605369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.105 0.895 9 O -0.227 6.227 10 C 0.121 3.879 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.136 4.136 14 C -0.009 4.009 15 C -0.119 4.119 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.139 4.139 19 C -0.144 4.144 20 C 0.088 3.912 21 O -0.380 6.380 22 C 0.088 3.912 23 C -0.053 4.053 24 C -0.199 4.199 25 H 0.274 0.726 26 H 0.125 0.875 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -17.404 1.968 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.070 3.930 11 C -0.257 4.257 12 C -0.068 4.068 13 C -0.137 4.137 14 C -0.009 4.009 15 C -0.137 4.137 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.140 4.140 19 C -0.144 4.144 20 C 0.012 3.988 21 O -0.299 6.299 22 C 0.012 3.988 23 C -0.071 4.071 24 C -0.218 4.218 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.549 -17.334 2.055 22.097 hybrid contribution -0.118 1.297 -0.136 1.310 sum 13.431 -16.037 1.920 21.006 Atomic orbital electron populations 1.70177 1.08077 1.29017 1.48358 1.26605 0.96829 1.02781 0.95639 0.84650 0.77420 0.74177 0.80010 1.17999 1.19663 1.18137 1.21830 0.92655 0.81324 1.53458 0.87823 1.83931 1.36032 1.12626 1.80675 1.19980 0.91580 0.87875 0.93577 1.21200 0.92946 1.00013 1.11587 1.21050 0.99750 0.90381 0.95621 1.18564 0.92646 0.92453 1.10006 1.18098 0.95952 0.92508 0.94358 1.21474 0.94870 0.98661 0.98681 1.21417 0.99695 0.93043 0.98393 1.20762 0.96517 1.00781 0.93582 1.21261 0.97898 0.96330 0.98463 1.21072 0.99874 0.96285 0.97200 1.21771 0.98917 0.84172 0.93917 1.89053 1.32477 1.24882 1.83489 1.21965 0.83699 0.98900 0.94215 1.20911 0.92873 0.96714 0.96608 1.20354 1.00042 0.90278 1.11175 0.91725 0.85700 0.84158 0.84698 0.82384 0.82702 0.88771 0.90591 0.86498 0.89167 0.84442 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.01 13.67 21.61 0.30 -55.71 16 2 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 3 Si 1.02 42.19 29.55 68.60 2.03 44.22 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.42 -23.99 9.48 67.92 0.64 -23.35 16 8 H 0.10 5.42 5.19 -2.91 -0.02 5.41 16 9 O -0.23 -13.53 9.75 -22.00 -0.21 -13.75 16 10 C 0.12 5.98 6.65 22.64 0.15 6.13 16 11 C -0.24 -10.23 9.15 22.36 0.20 -10.03 16 12 C -0.05 -1.74 9.50 22.46 0.21 -1.53 16 13 C -0.14 -4.49 5.41 -20.02 -0.11 -4.60 16 14 C -0.01 -0.25 5.46 -20.10 -0.11 -0.36 16 15 C -0.12 -2.69 9.52 22.51 0.21 -2.48 16 16 C -0.11 -1.85 10.03 22.26 0.22 -1.63 16 17 C -0.10 -1.64 10.04 22.27 0.22 -1.42 16 18 C -0.14 -2.93 6.32 -19.74 -0.12 -3.06 16 19 C -0.14 -3.76 6.00 -19.51 -0.12 -3.87 16 20 C 0.09 2.29 7.20 71.35 0.51 2.81 16 21 O -0.38 -9.57 11.72 -148.98 -1.75 -11.32 16 22 C 0.09 1.61 7.63 71.36 0.54 2.16 16 23 C -0.05 -1.87 8.64 22.46 0.19 -1.67 16 24 C -0.20 -8.53 9.98 22.36 0.22 -8.31 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.13 5.38 5.62 -2.91 -0.02 5.36 16 27 H 0.14 3.98 8.04 -2.91 -0.02 3.96 16 28 H 0.14 2.80 8.04 -2.91 -0.02 2.78 16 29 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.09 2.50 6.29 -2.39 -0.02 2.48 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.14 4.12 6.93 -2.91 -0.02 4.10 16 36 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -70.41 309.55 4.82 -65.59 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 1.11 Total: 22.86 kcal Atomic # 6 Polarization: -55.25 SS G_CDS: 3.36 Total: -51.89 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.30 Total: -55.71 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -1.96 Total: -25.07 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -70.41 4.82 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.361 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds