Wall clock time and date at job start Tue Mar 31 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48497 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47154 * 300.00493 * 3 2 1 6 6 H 1.48500 * 109.46743 * 60.00019 * 3 2 1 7 7 C 1.38647 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99785 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.35702 * 117.00293 * 185.05552 * 9 7 2 11 11 C 1.39003 * 119.94272 * 354.45536 * 10 9 7 12 12 C 1.37842 * 120.04751 * 179.97438 * 11 10 9 13 13 C 1.39435 * 119.94975 * 359.97438 * 12 11 10 14 14 C 1.48325 * 120.05491 * 179.97438 * 13 12 11 15 15 C 1.39423 * 119.95722 * 359.97438 * 14 13 12 16 16 C 1.38096 * 119.64716 * 179.84681 * 15 14 13 17 17 C 1.37879 * 120.14079 * 359.93757 * 16 15 14 18 18 C 1.39001 * 120.98576 * 0.30005 * 17 16 15 19 19 C 1.39070 * 119.96116 * 179.97438 * 14 13 12 20 20 O 1.36166 * 111.21945 * 179.31550 * 18 17 16 21 21 C 1.43752 * 109.26139 * 18.89100 * 20 18 17 22 22 C 1.51692 * 132.01285 * 180.57554 * 17 16 15 23 23 C 1.39440 * 119.89461 * 0.25705 * 13 12 11 24 24 C 1.37841 * 119.94691 * 359.50887 * 23 13 12 25 25 H 0.97002 * 119.99917 * 359.97438 * 1 2 3 26 26 H 1.07991 * 119.97607 * 359.97100 * 11 10 9 27 27 H 1.08001 * 120.02181 * 180.02562 * 12 11 10 28 28 H 1.08000 * 120.17821 * 359.57413 * 15 14 13 29 29 H 1.07994 * 119.93069 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.93135 * 0.10063 * 19 14 13 31 31 H 1.09003 * 110.74578 * 90.60463 * 21 20 18 32 32 H 1.09000 * 110.74653 * 213.76158 * 21 20 18 33 33 H 1.08999 * 110.93644 * 46.06827 * 22 17 16 34 34 H 1.08999 * 110.93686 * 282.38342 * 22 17 16 35 35 H 1.07999 * 120.02415 * 179.72220 * 23 13 12 36 36 H 1.07997 * 119.97354 * 180.23241 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3682 -0.0005 10 6 2.0697 -3.5040 0.1055 11 6 3.4580 -3.4359 0.0915 12 6 4.2067 -4.5882 0.1995 13 6 3.5704 -5.8227 0.3235 14 6 4.3738 -7.0642 0.4394 15 6 5.7663 -6.9963 0.4237 16 6 6.5080 -8.1559 0.5352 17 6 5.8741 -9.3737 0.6626 18 6 4.4868 -9.4604 0.6752 19 6 3.7372 -8.2943 0.5635 20 8 4.0749 -10.7528 0.7944 21 6 5.1567 -11.5501 1.3047 22 6 6.4081 -10.7855 0.8124 23 6 2.1776 -5.8889 0.3324 24 6 1.4332 -4.7335 0.2290 25 1 -0.4850 0.8401 0.0004 26 1 3.9504 -2.4795 -0.0042 27 1 5.2854 -4.5347 0.1890 28 1 6.2623 -6.0425 0.3205 29 1 7.5868 -8.1087 0.5233 30 1 2.6584 -8.3442 0.5737 31 1 5.1297 -11.5859 2.3938 32 1 5.1259 -12.5560 0.8860 33 1 7.2051 -10.8237 1.5550 34 1 6.7513 -11.1759 -0.1457 35 1 1.6826 -6.8444 0.4238 36 1 0.3544 -4.7839 0.2396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:24 Heat of formation + Delta-G solvation = -8.990929 kcal Electronic energy + Delta-G solvation = -20213.449231 eV Core-core repulsion = 17014.575220 eV Total energy + Delta-G solvation = -3198.874012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02097 -39.20197 -37.74305 -36.05442 -32.89173 -32.32075 -30.74460 -30.30023 -29.65852 -27.32860 -25.48128 -23.57203 -22.83361 -22.01009 -21.21755 -20.36839 -18.12053 -17.45893 -16.91170 -16.60129 -16.28778 -15.46146 -14.55695 -14.52205 -14.40438 -13.76461 -13.70652 -13.58417 -13.41500 -13.12026 -12.81787 -12.78049 -12.40869 -11.96937 -11.78150 -11.63873 -11.58034 -11.18928 -11.13789 -10.82950 -10.64019 -10.50820 -10.39058 -9.41094 -9.12932 -8.68947 -8.29952 -8.15160 -6.99517 -6.56257 -4.12543 1.07236 1.50942 2.17030 2.43903 3.07157 3.08671 3.14405 3.23783 3.85559 3.88900 4.34420 4.50293 4.60558 4.79512 4.88988 5.00197 5.10162 5.16018 5.23285 5.28510 5.38095 5.53792 5.56176 5.61232 5.69061 5.76537 6.06441 6.13701 6.25072 6.36267 6.48277 6.57470 6.62020 6.66855 6.84479 6.99540 7.17106 7.27184 7.31240 7.36021 7.70876 7.88980 8.88959 9.57191 10.61059 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.046143 B = 0.003036 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.665603 B = 9220.991816 C = 9789.065588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.096 0.904 9 O -0.169 6.169 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.048 4.048 13 C -0.165 4.165 14 C 0.038 3.962 15 C -0.158 4.158 16 C -0.063 4.063 17 C -0.203 4.203 18 C 0.110 3.890 19 C -0.150 4.150 20 O -0.308 6.308 21 C 0.052 3.948 22 C -0.105 4.105 23 C -0.054 4.054 24 C -0.194 4.194 25 H 0.272 0.728 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.874 -16.384 1.916 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.113 0.887 9 O -0.071 6.071 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.066 4.066 13 C -0.166 4.166 14 C 0.038 3.962 15 C -0.176 4.176 16 C -0.081 4.081 17 C -0.204 4.204 18 C 0.065 3.935 19 C -0.169 4.169 20 O -0.223 6.223 21 C -0.024 4.024 22 C -0.142 4.142 23 C -0.072 4.072 24 C -0.213 4.213 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.204 -16.248 1.846 19.823 hybrid contribution 0.667 0.759 0.031 1.011 sum 11.871 -15.490 1.877 19.606 Atomic orbital electron populations 1.70047 1.06055 1.27891 1.45043 1.25351 0.95884 0.99026 0.96274 0.85607 0.79180 0.80067 0.78368 1.18960 1.20019 1.20016 1.21454 0.92005 0.80677 1.52631 0.88702 1.83955 1.34687 1.11641 1.76821 1.19505 0.90312 0.87961 0.91592 1.21105 0.93701 0.98950 1.11829 1.20821 0.98528 0.91323 0.95947 1.18154 0.92640 0.91281 1.14500 1.18486 0.92577 0.91533 0.93597 1.21087 0.93133 0.98146 1.05275 1.20136 0.99350 0.90463 0.98116 1.20649 0.93707 0.95111 1.10918 1.19406 0.92361 0.84741 0.97005 1.20244 0.99976 0.88474 1.08160 1.86814 1.38520 1.16144 1.80784 1.23774 0.84146 0.95164 0.99270 1.21708 0.98321 0.91698 1.02506 1.20752 0.92615 0.96996 0.96818 1.20159 0.99741 0.90122 1.11261 0.91831 0.85193 0.86918 0.85355 0.86203 0.85370 0.90807 0.87963 0.89540 0.89668 0.86524 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.65 9.48 30.88 0.29 -10.36 16 8 H 0.10 2.37 5.19 -52.49 -0.27 2.10 16 9 O -0.17 -4.71 9.75 0.25 0.00 -4.70 16 10 C 0.16 3.82 6.65 -39.02 -0.26 3.56 16 11 C -0.24 -5.01 9.15 -39.44 -0.36 -5.37 16 12 C -0.05 -0.88 9.41 -39.28 -0.37 -1.25 16 13 C -0.16 -2.94 5.88 -104.85 -0.62 -3.56 16 14 C 0.04 0.61 5.87 -105.00 -0.62 -0.01 16 15 C -0.16 -2.21 9.44 -39.19 -0.37 -2.58 16 16 C -0.06 -0.77 10.02 -39.76 -0.40 -1.17 16 17 C -0.20 -2.55 6.27 -103.98 -0.65 -3.21 16 18 C 0.11 1.57 7.03 -38.99 -0.27 1.30 16 19 C -0.15 -2.29 9.44 -38.96 -0.37 -2.66 16 20 O -0.31 -4.11 11.10 -20.27 -0.23 -4.34 16 21 C 0.05 0.46 8.01 38.05 0.30 0.76 16 22 C -0.11 -0.94 7.12 -26.50 -0.19 -1.12 16 23 C -0.05 -0.98 9.41 -39.28 -0.37 -1.34 16 24 C -0.19 -4.04 9.98 -39.45 -0.39 -4.43 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.13 2.72 5.62 -52.49 -0.30 2.43 16 27 H 0.11 1.71 6.19 -52.49 -0.32 1.39 16 28 H 0.13 1.60 6.19 -52.49 -0.32 1.28 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.85 6.16 -52.49 -0.32 1.53 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 1.80 6.18 -52.49 -0.32 1.48 16 36 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -30.72 306.58 -8.14 -38.86 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.54 Total: 4.90 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -4.74 Total: -30.47 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.76 Total: -23.79 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.22 Total: -9.04 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.72 -8.14 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.864 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds