Wall clock time and date at job start Tue Mar 31 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86790 * 119.99816 * 2 1 4 4 H 1.48504 * 109.47382 * 270.00058 * 3 2 1 5 5 H 1.48504 * 109.47296 * 30.00096 * 3 2 1 6 6 H 1.48506 * 109.47252 * 149.99940 * 3 2 1 7 7 C 1.38634 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00283 * 359.97438 * 7 2 1 9 9 O 1.34812 * 119.99783 * 179.97438 * 7 2 1 10 10 C 1.35711 * 116.99908 * 185.05143 * 9 7 2 11 11 C 1.38994 * 119.94403 * 354.45291 * 10 9 7 12 12 C 1.37841 * 120.05692 * 179.97438 * 11 10 9 13 13 C 1.39458 * 119.93920 * 0.02562 * 12 11 10 14 14 C 1.48268 * 120.05404 * 180.02562 * 13 12 11 15 15 C 1.39157 * 120.01142 * 309.99884 * 14 13 12 16 16 C 1.37997 * 120.21210 * 180.02562 * 15 14 13 17 17 C 1.38492 * 119.90490 * 359.83446 * 16 15 14 18 18 C 1.37793 * 120.24798 * 359.97438 * 17 16 15 19 19 C 1.38736 * 120.86441 * 0.33545 * 18 17 16 20 20 O 1.36320 * 111.38667 * 179.13149 * 19 18 17 21 21 C 1.43775 * 109.09278 * 18.71296 * 20 19 18 22 22 C 1.51670 * 132.10926 * 180.37573 * 18 17 16 23 23 C 1.39462 * 119.89604 * 0.27122 * 13 12 11 24 24 C 1.37840 * 119.93972 * 359.42943 * 23 13 12 25 25 H 0.97003 * 120.00329 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.97577 * 359.97438 * 11 10 9 27 27 H 1.07996 * 120.03424 * 180.02562 * 12 11 10 28 28 H 1.07998 * 119.89123 * 359.97438 * 15 14 13 29 29 H 1.07997 * 120.04499 * 179.81070 * 16 15 14 30 30 H 1.08003 * 119.87216 * 180.02562 * 17 16 15 31 31 H 1.09000 * 110.74886 * 214.13123 * 21 20 19 32 32 H 1.09007 * 110.75300 * 90.95765 * 21 20 19 33 33 H 1.09003 * 110.93549 * 46.42181 * 22 18 17 34 34 H 1.08998 * 110.97787 * 282.75080 * 22 18 17 35 35 H 1.07997 * 120.03245 * 179.70770 * 23 13 12 36 36 H 1.07999 * 119.97058 * 180.29455 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2006 -0.0005 8 1 1.4688 -2.1359 -0.0005 9 8 3.3569 -1.2006 -0.0011 10 6 3.9730 -2.4051 -0.1080 11 6 3.2199 -3.5732 -0.0944 12 6 3.8431 -4.7978 -0.2034 13 6 5.2307 -4.8641 -0.3270 14 6 5.9037 -6.1799 -0.4450 15 6 5.6125 -7.1944 0.4619 16 6 6.2369 -8.4205 0.3562 17 6 7.1537 -8.6435 -0.6576 18 6 7.4447 -7.6455 -1.5621 19 6 6.8342 -6.4029 -1.4718 20 8 7.2757 -5.5600 -2.4479 21 6 7.8803 -6.3330 -3.4987 22 6 8.3777 -7.5962 -2.7568 23 6 5.9847 -3.6909 -0.3342 24 6 5.3561 -2.4685 -0.2311 25 1 -0.4851 0.8400 0.0004 26 1 2.1454 -3.5214 0.0017 27 1 3.2576 -5.7052 -0.1932 28 1 4.8963 -7.0213 1.2514 29 1 6.0112 -9.2050 1.0634 30 1 7.6417 -9.6034 -0.7400 31 1 8.7155 -5.7926 -3.9441 32 1 7.1435 -6.5958 -4.2578 33 1 8.2617 -8.4840 -3.3785 34 1 9.4134 -7.4785 -2.4385 35 1 7.0597 -3.7398 -0.4250 36 1 5.9392 -1.5594 -0.2414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:20 Heat of formation + Delta-G solvation = -7.155684 kcal Electronic energy + Delta-G solvation = -20658.131892 eV Core-core repulsion = 17459.337463 eV Total energy + Delta-G solvation = -3198.794429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03844 -39.11974 -37.55830 -36.38766 -32.94895 -32.33201 -30.76255 -30.32369 -29.21463 -27.80279 -25.26174 -23.56093 -22.38653 -22.31701 -21.39356 -20.17618 -17.90389 -17.46277 -17.19882 -16.48631 -16.23016 -15.62445 -14.80611 -14.62702 -13.99334 -13.82524 -13.79949 -13.50712 -13.22077 -13.11616 -12.77307 -12.65252 -12.27268 -12.21697 -11.91836 -11.86893 -11.49502 -11.30599 -10.91122 -10.75193 -10.71356 -10.53739 -10.15651 -9.41725 -8.99157 -8.69504 -8.26757 -8.14082 -7.14232 -6.43389 -4.09141 1.20406 1.37728 2.17092 2.29837 3.21769 3.25633 3.30570 3.40282 3.75290 4.22893 4.30579 4.46822 4.53537 4.79123 4.85388 4.88452 5.06518 5.11347 5.20589 5.31121 5.44728 5.46963 5.57363 5.61256 5.64656 5.75760 6.01701 6.13949 6.24207 6.30910 6.40593 6.53484 6.59497 6.67933 6.81333 7.02842 7.21933 7.29310 7.30603 7.59753 7.79094 8.02279 8.91706 9.54081 10.64015 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.003718 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.492876 B = 7529.285650 C = 8046.979549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.164 3.836 11 C -0.223 4.223 12 C -0.056 4.056 13 C -0.146 4.146 14 C -0.027 4.027 15 C -0.084 4.084 16 C -0.146 4.146 17 C -0.085 4.085 18 C -0.178 4.178 19 C 0.108 3.892 20 O -0.294 6.294 21 C 0.049 3.951 22 C -0.108 4.108 23 C -0.049 4.049 24 C -0.193 4.193 25 H 0.280 0.720 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.846 -15.556 -3.361 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.119 6.119 10 C 0.112 3.888 11 C -0.242 4.242 12 C -0.074 4.074 13 C -0.147 4.147 14 C -0.027 4.027 15 C -0.102 4.102 16 C -0.164 4.164 17 C -0.103 4.103 18 C -0.179 4.179 19 C 0.063 3.937 20 O -0.208 6.208 21 C -0.027 4.027 22 C -0.145 4.145 23 C -0.067 4.067 24 C -0.212 4.212 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.702 -14.920 -3.366 21.216 hybrid contribution 0.168 0.462 -0.135 0.510 sum 14.871 -14.458 -3.501 21.034 Atomic orbital electron populations 1.69651 1.05579 1.28552 1.47780 1.24473 0.95037 0.98870 0.95595 0.86179 0.80353 0.81362 0.79016 1.19835 1.20746 1.18308 1.20791 0.76882 0.96703 1.52135 0.87524 1.83558 1.22661 1.25882 1.79804 1.19207 0.91670 0.85442 0.92500 1.21194 1.01145 0.91674 1.10174 1.20800 0.92825 0.96842 0.96928 1.18167 0.93009 0.90895 1.12650 1.18115 0.95352 0.94778 0.94505 1.21057 0.99398 0.92027 0.97756 1.20929 0.98851 0.97443 0.99194 1.20218 0.98119 0.97770 0.94182 1.20678 1.01133 0.95568 1.00478 1.19640 0.94309 0.88837 0.90940 1.86977 1.73251 1.31410 1.29155 1.23798 0.97752 0.91187 0.89937 1.21764 0.99132 0.99072 0.94511 1.20635 0.98364 0.90853 0.96834 1.20131 0.91871 0.97776 1.11435 0.91005 0.84733 0.87068 0.85060 0.85664 0.86280 0.87868 0.90725 0.89402 0.89447 0.86854 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 13.96 55.48 0.77 -24.58 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.73 28.61 -169.99 -4.86 16.86 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -11.02 9.94 30.88 0.31 -10.71 16 8 H 0.11 3.07 5.42 -52.49 -0.28 2.79 16 9 O -0.21 -5.71 8.58 0.22 0.00 -5.71 16 10 C 0.16 3.87 6.65 -39.02 -0.26 3.61 16 11 C -0.22 -4.89 9.15 -39.45 -0.36 -5.25 16 12 C -0.06 -1.05 9.49 -39.27 -0.37 -1.42 16 13 C -0.15 -2.67 5.45 -104.86 -0.57 -3.24 16 14 C -0.03 -0.42 5.49 -104.64 -0.57 -1.00 16 15 C -0.08 -1.13 9.47 -39.33 -0.37 -1.50 16 16 C -0.15 -1.64 10.05 -39.58 -0.40 -2.03 16 17 C -0.08 -0.93 10.02 -39.65 -0.40 -1.33 16 18 C -0.18 -2.17 6.27 -104.12 -0.65 -2.83 16 19 C 0.11 1.62 6.60 -38.60 -0.25 1.37 16 20 O -0.29 -4.39 10.72 -20.77 -0.22 -4.61 16 21 C 0.05 0.48 8.00 38.05 0.30 0.79 16 22 C -0.11 -0.97 7.12 -26.51 -0.19 -1.16 16 23 C -0.05 -0.91 9.20 -39.27 -0.36 -1.27 16 24 C -0.19 -3.99 9.98 -39.44 -0.39 -4.39 16 25 H 0.28 7.45 8.31 -40.82 -0.34 7.12 16 26 H 0.14 3.06 5.62 -52.49 -0.30 2.77 16 27 H 0.11 1.82 8.03 -52.49 -0.42 1.40 16 28 H 0.13 1.61 8.03 -52.49 -0.42 1.19 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.92 8.04 -52.49 -0.42 1.50 16 36 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 311.78 15.07 4.70 4.70 Total: -1.00 -30.93 311.78 -8.19 -39.12 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.94 Total: 2.89 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -4.64 Total: -28.67 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.77 Total: -24.58 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.22 Total: -10.32 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.93 -8.19 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.966 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds