Wall clock time and date at job start Tue Mar 31 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38231 * 120.84194 * 2 1 4 4 C 1.38701 * 119.28911 * 180.27247 * 3 2 1 5 5 F 1.35098 * 119.48764 * 179.70180 * 4 3 2 6 6 N 1.32145 * 121.01440 * 359.72517 * 4 3 2 7 7 C 1.31704 * 121.83636 * 359.97438 * 6 4 3 8 8 C 1.39548 * 120.59392 * 0.02562 * 7 6 4 9 9 C 1.47997 * 120.52777 * 179.97438 * 8 7 6 10 10 C 1.39990 * 119.50287 * 129.99833 * 9 8 7 11 11 C 1.35994 * 121.19386 * 179.97438 * 10 9 8 12 12 C 1.41045 * 120.10932 * 0.02562 * 11 10 9 13 13 C 1.40436 * 120.49094 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00245 * 208.74882 * 13 12 11 15 15 C 1.40290 * 119.99788 * 28.74490 * 13 12 11 16 16 N 1.30645 * 119.99930 * 197.54615 * 15 13 12 17 17 Si 1.86797 * 120.00174 * 17.55131 * 15 13 12 18 18 H 1.48499 * 109.47114 * 269.99828 * 17 15 13 19 19 H 1.48499 * 109.47168 * 29.99642 * 17 15 13 20 20 H 1.48506 * 109.47214 * 149.99814 * 17 15 13 21 21 C 1.46647 * 119.02546 * 0.25175 * 12 11 10 22 22 C 1.43202 * 120.56956 * 179.72994 * 21 12 11 23 23 N 7.03962 * 92.71745 * 201.76497 * 2 1 3 24 24 C 1.39086 * 118.86607 * 359.44343 * 21 12 11 25 25 H 1.08993 * 109.47049 * 270.24976 * 1 2 3 26 26 H 1.09005 * 109.46770 * 30.24834 * 1 2 3 27 27 H 1.08998 * 109.46926 * 150.24349 * 1 2 3 28 28 H 1.08004 * 120.35483 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.70142 * 180.02562 * 7 6 4 30 30 H 1.08000 * 119.40184 * 359.95335 * 10 9 8 31 31 H 1.07998 * 119.94822 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99811 * 355.45284 * 16 15 13 33 33 H 1.07997 * 120.10122 * 180.26546 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.1868 0.0000 4 6 3.6021 1.1493 -0.0058 5 9 4.2987 2.3068 -0.0119 6 7 4.2521 -0.0013 -0.0058 7 6 3.6196 -1.1565 0.0001 8 6 2.2249 -1.2026 0.0061 9 6 1.5157 -2.5015 0.0122 10 6 0.5019 -2.7291 0.9503 11 6 -0.1724 -3.9096 0.9864 12 6 0.1438 -4.9333 0.0691 13 6 -0.5471 -6.1556 0.0995 14 1 -0.0582 -7.0606 -0.2299 15 6 -1.8722 -6.2012 0.5578 16 7 -2.4020 -7.3416 0.9122 17 14 -2.8793 -4.6313 0.6611 18 1 -2.6994 -4.0151 2.0002 19 1 -2.4243 -3.6815 -0.3859 20 1 -4.3146 -4.9492 0.4512 21 6 1.2087 -4.7049 -0.9128 22 6 1.5608 -5.7236 -1.8557 23 7 1.8407 -6.5304 -2.6074 24 6 1.8669 -3.4796 -0.9168 25 1 -0.3633 0.0045 1.0276 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6953 2.1333 -0.0004 29 1 4.1854 -2.0764 0.0003 30 1 0.2510 -1.9533 1.6585 31 1 -0.9507 -4.0637 1.7190 32 1 -1.9026 -8.1651 0.7966 33 1 2.6514 -3.2885 -1.6340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243756734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:59 Heat of formation + Delta-G solvation = 19.927481 kcal Electronic energy + Delta-G solvation = -20341.814464 eV Core-core repulsion = 17053.026895 eV Total energy + Delta-G solvation = -3288.787569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.85182 -40.10016 -38.04903 -35.42851 -34.65013 -33.76517 -31.92756 -30.46632 -29.37262 -27.94319 -25.50542 -23.46789 -22.28774 -21.91228 -21.11695 -18.65558 -17.76319 -17.35354 -17.10043 -15.92738 -15.41370 -14.94065 -14.81171 -14.41904 -14.18711 -13.80298 -13.60448 -13.30928 -13.13837 -12.74318 -12.67607 -12.51632 -12.40469 -12.09212 -11.95314 -11.78077 -11.40779 -11.17938 -10.85258 -10.61706 -10.28438 -9.89074 -9.66569 -9.47353 -9.35529 -8.85933 -8.17434 -8.02016 -7.63072 -5.07982 0.98004 1.22862 1.81725 2.28468 2.89885 3.06773 3.24007 3.60946 3.64978 3.67682 3.74497 3.89320 4.24556 4.57556 4.85141 4.93203 4.96707 5.09558 5.20485 5.51031 5.53507 5.56644 5.70046 5.79522 5.92098 5.97850 6.15689 6.27753 6.35075 6.44358 6.74680 6.80126 6.94566 7.05960 7.16624 7.31768 7.41290 7.79814 7.83954 7.92727 8.16516 8.55014 9.42720 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.004984 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.033207 B = 5616.764821 C = 6581.854981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.024 4.024 3 C -0.190 4.190 4 C 0.277 3.723 5 F -0.123 7.123 6 N -0.515 5.515 7 C 0.127 3.873 8 C -0.050 4.050 9 C -0.212 4.212 10 C -0.021 4.021 11 C -0.242 4.242 12 C 0.133 3.867 13 C -0.461 4.461 14 H 0.086 0.914 15 C 0.038 3.962 16 N -0.771 5.771 17 Si 1.073 2.927 18 H -0.268 1.268 19 H -0.253 1.253 20 H -0.283 1.283 21 C -0.175 4.175 22 C 0.294 3.706 23 N -0.496 5.496 24 C 0.014 3.986 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.165 0.835 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.296 0.704 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 12.857 2.049 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.032 4.032 3 C -0.211 4.211 4 C 0.124 3.876 5 F -0.103 7.103 6 N -0.229 5.229 7 C -0.030 4.030 8 C -0.052 4.052 9 C -0.214 4.214 10 C -0.040 4.040 11 C -0.261 4.261 12 C 0.127 3.873 13 C -0.487 4.487 14 H 0.104 0.896 15 C -0.187 4.187 16 N -0.390 5.390 17 Si 0.896 3.104 18 H -0.194 1.194 19 H -0.177 1.177 20 H -0.210 1.210 21 C -0.180 4.180 22 C -0.016 4.016 23 N -0.174 5.174 24 C -0.008 4.008 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.158 0.842 29 H 0.183 0.817 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.607 12.111 1.351 12.201 hybrid contribution 0.846 -0.362 -0.069 0.922 sum 1.452 11.749 1.282 11.908 Atomic orbital electron populations 1.20928 0.89589 1.03877 1.03031 1.20335 0.97105 0.91118 0.94617 1.21555 0.92462 1.00103 1.06964 1.18110 0.86788 0.81621 1.01090 1.91569 1.80352 1.44606 1.93728 1.66879 1.42384 0.97972 1.15702 1.22761 0.91288 0.93825 0.95090 1.19803 0.93467 0.93521 0.98389 1.17421 1.05581 0.93254 1.05135 1.20389 0.92779 0.95687 0.95127 1.20731 1.06332 0.95809 1.03209 1.18546 0.89142 0.92013 0.87576 1.20995 0.98644 0.95514 1.33551 0.89591 1.27767 0.96632 1.04708 0.89578 1.70445 1.42407 1.00762 1.25360 0.83608 0.74929 0.72583 0.79237 1.19431 1.17738 1.21020 1.16692 1.09124 0.91817 1.00381 1.25740 0.91479 0.92383 0.91989 1.81134 1.12342 1.10849 1.13102 1.20627 0.94848 0.90503 0.94778 0.90369 0.91472 0.89379 0.84167 0.81747 0.87883 0.86572 0.89214 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.51 36.00 0.31 -0.98 16 2 C -0.02 -0.32 5.90 -103.94 -0.61 -0.93 16 3 C -0.19 -2.36 9.77 -39.41 -0.39 -2.74 16 4 C 0.28 4.02 8.41 -17.25 -0.14 3.88 16 5 F -0.12 -1.76 17.29 2.25 0.04 -1.72 16 6 N -0.52 -8.08 10.36 -13.22 -0.14 -8.21 16 7 C 0.13 1.86 10.66 -17.12 -0.18 1.68 16 8 C -0.05 -0.72 5.45 -104.73 -0.57 -1.30 16 9 C -0.21 -3.43 4.81 -104.81 -0.50 -3.93 16 10 C -0.02 -0.34 7.84 -39.73 -0.31 -0.65 16 11 C -0.24 -4.57 7.20 -39.32 -0.28 -4.85 16 12 C 0.13 2.83 5.30 -104.61 -0.55 2.27 16 13 C -0.46 -10.64 8.90 -37.98 -0.34 -10.98 16 14 H 0.09 2.15 7.61 -52.49 -0.40 1.75 16 15 C 0.04 0.85 5.42 -17.29 -0.09 0.76 16 16 N -0.77 -17.88 13.64 55.57 0.76 -17.12 16 17 Si 1.07 19.86 24.90 -169.99 -4.23 15.63 16 18 H -0.27 -4.53 6.44 56.52 0.36 -4.17 16 19 H -0.25 -4.52 7.02 56.52 0.40 -4.12 16 20 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.17 -3.54 5.93 -104.26 -0.62 -4.16 16 22 C 0.29 6.40 14.34 -22.42 -0.32 6.08 16 23 N -0.50 -11.34 18.55 41.90 0.78 -10.57 16 24 C 0.01 0.24 9.19 -38.84 -0.36 -0.12 16 25 H 0.08 0.76 7.57 -51.93 -0.39 0.37 16 26 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.09 1.10 6.60 -51.93 -0.34 0.75 16 28 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.17 2.15 8.03 -52.49 -0.42 1.72 16 30 H 0.10 1.44 6.90 -52.49 -0.36 1.08 16 31 H 0.12 2.14 4.39 -52.49 -0.23 1.91 16 32 H 0.30 6.73 8.72 -40.82 -0.36 6.37 16 33 H 0.11 1.66 8.02 -52.49 -0.42 1.24 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -24.42 296.97 -5.90 -30.32 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.61 Total: 3.20 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -4.97 Total: -15.99 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 1.40 Total: -35.91 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.23 Total: 15.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.42 -5.90 -30.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243756734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.244 kcal (2) G-P(sol) polarization free energy of solvation -24.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds