Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37940 * 120.46166 * 2 1 4 4 N 1.31950 * 120.91581 * 180.02562 * 3 2 1 5 5 C 1.32102 * 121.97723 * 0.02562 * 4 3 2 6 6 F 1.35101 * 119.58469 * 179.97438 * 5 4 3 7 7 C 1.38308 * 120.81788 * 359.71635 * 5 4 3 8 8 C 1.39691 * 118.99431 * 0.53258 * 7 5 4 9 9 C 1.48341 * 120.89348 * 179.75038 * 8 7 5 10 10 C 1.39802 * 119.53537 * 129.72138 * 9 8 7 11 11 C 1.37734 * 121.17272 * 179.97438 * 10 9 8 12 12 C 1.39569 * 120.18347 * 0.27773 * 11 10 9 13 13 C 1.43203 * 120.45231 * 179.74670 * 12 11 10 14 14 N 7.65452 * 69.81835 * 179.13424 * 2 1 3 15 15 C 1.46516 * 119.08687 * 359.48422 * 12 11 10 16 16 C 1.40839 * 120.55374 * 180.26749 * 15 12 11 17 17 H 1.07999 * 119.99727 * 330.36128 * 16 15 12 18 18 C 1.40237 * 119.99960 * 150.35807 * 16 15 12 19 19 N 1.30660 * 120.00009 * 161.89557 * 18 16 15 20 20 Si 1.86799 * 120.00237 * 341.89137 * 18 16 15 21 21 H 1.48507 * 109.46788 * 95.39437 * 20 18 16 22 22 H 1.48495 * 109.47435 * 215.39236 * 20 18 16 23 23 H 1.48502 * 109.47061 * 335.39767 * 20 18 16 24 24 C 1.38585 * 119.53568 * 309.70255 * 9 8 7 25 25 H 1.08997 * 109.46849 * 269.98178 * 1 2 3 26 26 H 1.09004 * 109.46858 * 29.97479 * 1 2 3 27 27 H 1.08999 * 109.47092 * 149.97303 * 1 2 3 28 28 H 1.07994 * 119.53707 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.50529 * 180.30837 * 7 5 4 30 30 H 1.07998 * 119.41542 * 0.02562 * 10 9 8 31 31 H 1.07998 * 119.90829 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00069 * 179.97438 * 19 18 16 33 33 H 1.08005 * 120.13596 * 0.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.1890 0.0000 4 7 3.5258 1.1995 -0.0005 5 6 4.2342 0.0845 -0.0015 6 9 5.5836 0.1516 -0.0025 7 6 3.6117 -1.1506 0.0038 8 6 2.2159 -1.2053 -0.0011 9 6 1.5047 -2.5071 -0.0013 10 6 0.4888 -2.7375 0.9311 11 6 -0.1938 -3.9335 0.9608 12 6 0.1253 -4.9462 0.0549 13 6 -0.5771 -6.1939 0.0842 14 7 -1.1338 -7.1837 0.1086 15 6 1.1847 -4.7131 -0.9300 16 6 1.5280 -5.7116 -1.8620 17 1 1.4065 -6.7538 -1.6062 18 6 2.0274 -5.3525 -3.1223 19 7 2.6692 -6.2314 -3.8454 20 14 1.7753 -3.6176 -3.7672 21 1 2.9739 -2.7963 -3.4603 22 1 1.5681 -3.6610 -5.2370 23 1 0.5834 -3.0161 -3.1169 24 6 1.8564 -3.4776 -0.9260 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6663 2.1242 0.0004 29 1 4.1959 -2.0589 0.0079 30 1 0.2341 -1.9638 1.6402 31 1 -0.9748 -4.0898 1.6901 32 1 3.0143 -5.9831 -4.7172 33 1 2.6433 -3.2860 -1.6405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243783318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = 26.496256 kcal Electronic energy + Delta-G solvation = -20626.741741 eV Core-core repulsion = 17338.239015 eV Total energy + Delta-G solvation = -3288.502726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.88242 -40.23340 -38.04749 -35.47034 -34.41799 -33.42870 -32.26384 -30.87847 -29.58913 -27.03610 -25.75288 -24.42641 -22.33613 -21.71511 -20.97534 -18.15499 -17.84160 -17.42106 -16.97523 -15.95408 -15.48654 -15.18063 -14.61787 -14.48019 -14.04334 -13.92408 -13.60501 -13.54325 -13.14292 -12.84625 -12.57219 -12.33437 -12.30054 -12.07989 -11.87044 -11.73322 -11.60086 -11.19454 -11.14359 -10.68842 -10.40274 -10.10909 -9.63314 -9.59902 -9.52879 -8.72861 -8.13112 -7.80925 -7.42265 -4.96367 0.90798 0.99528 1.85018 2.31636 2.83912 2.93967 3.02559 3.55530 3.61866 3.65068 3.72764 3.85623 4.27798 4.54341 4.76465 4.88019 4.91843 5.05901 5.15544 5.43441 5.58737 5.64061 5.69964 5.76256 5.82334 6.02815 6.13616 6.20097 6.31949 6.40833 6.67393 6.71937 6.79038 7.10668 7.19727 7.35613 7.55867 7.67686 7.84380 8.10543 8.25092 8.61258 9.56575 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.006548 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.251450 B = 4275.004371 C = 5253.324604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 C 0.129 3.871 4 N -0.521 5.521 5 C 0.296 3.704 6 F -0.117 7.117 7 C -0.180 4.180 8 C 0.039 3.961 9 C 0.000 4.000 10 C -0.233 4.233 11 C -0.015 4.015 12 C -0.162 4.162 13 C 0.294 3.706 14 N -0.493 5.493 15 C 0.123 3.877 16 C -0.409 4.409 17 H 0.100 0.900 18 C 0.082 3.918 19 N -0.769 5.769 20 Si 0.906 3.094 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.235 1.235 24 C -0.207 4.207 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.296 0.704 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 12.938 3.702 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.027 4.027 4 N -0.236 5.236 5 C 0.143 3.857 6 F -0.096 7.096 7 C -0.202 4.202 8 C 0.031 3.969 9 C -0.001 4.001 10 C -0.253 4.253 11 C -0.036 4.036 12 C -0.167 4.167 13 C -0.017 4.017 14 N -0.171 5.171 15 C 0.118 3.882 16 C -0.435 4.435 17 H 0.118 0.882 18 C -0.143 4.143 19 N -0.390 5.390 20 Si 0.731 3.269 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.158 1.158 24 C -0.227 4.227 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.182 0.818 29 H 0.169 0.831 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.736 12.026 3.496 12.546 hybrid contribution 0.368 0.193 -0.502 0.651 sum -0.369 12.219 2.995 12.586 Atomic orbital electron populations 1.20820 0.89324 1.03648 1.02876 1.21063 0.98342 0.92697 1.01884 1.22261 0.87365 0.97789 0.95285 1.66891 1.09561 1.30803 1.16308 1.17976 0.78465 0.89894 0.99383 1.91600 1.27547 1.96990 1.93490 1.22021 0.95267 0.97901 1.04972 1.19290 0.91635 0.93819 0.92117 1.18197 0.95261 0.90006 0.96637 1.20088 1.02384 0.98574 1.04225 1.20504 0.96379 0.91765 0.94927 1.16900 1.02423 0.89865 1.07549 1.25662 0.91907 0.92509 0.91577 1.81054 1.12790 1.11758 1.11531 1.18335 0.87918 0.91161 0.90825 1.19702 1.31053 0.96104 0.96681 0.88227 1.26390 0.90711 1.00414 0.96738 1.69584 1.20889 1.37217 1.11263 0.86348 0.81979 0.80785 0.77819 1.18779 1.20807 1.15779 1.21024 1.03831 0.94913 1.02903 0.90576 0.91604 0.89784 0.81842 0.83136 0.87431 0.87331 0.89319 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 8.50 36.01 0.31 -0.88 16 2 C -0.14 -1.82 5.88 -104.14 -0.61 -2.44 16 3 C 0.13 1.62 10.85 -17.61 -0.19 1.43 16 4 N -0.52 -7.88 10.36 -13.68 -0.14 -8.02 16 5 C 0.30 4.61 8.40 -17.41 -0.15 4.47 16 6 F -0.12 -1.82 17.29 2.25 0.04 -1.78 16 7 C -0.18 -2.80 9.59 -39.01 -0.37 -3.18 16 8 C 0.04 0.61 5.46 -104.60 -0.57 0.04 16 9 C 0.00 0.00 4.80 -105.03 -0.50 -0.50 16 10 C -0.23 -3.75 7.92 -39.18 -0.31 -4.06 16 11 C -0.01 -0.26 9.74 -39.27 -0.38 -0.64 16 12 C -0.16 -3.30 5.94 -104.14 -0.62 -3.92 16 13 C 0.29 6.40 14.35 -22.47 -0.32 6.08 16 14 N -0.49 -11.30 18.54 41.84 0.78 -10.52 16 15 C 0.12 2.69 5.26 -104.68 -0.55 2.14 16 16 C -0.41 -9.83 9.03 -37.85 -0.34 -10.17 16 17 H 0.10 2.62 7.64 -52.49 -0.40 2.22 16 18 C 0.08 1.91 5.41 -17.30 -0.09 1.81 16 19 N -0.77 -18.29 13.92 55.56 0.77 -17.52 16 20 Si 0.91 18.09 24.53 -169.99 -4.17 13.92 16 21 H -0.26 -5.08 6.72 56.52 0.38 -4.70 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.24 -4.68 6.86 56.52 0.39 -4.29 16 24 C -0.21 -4.13 6.64 -38.55 -0.26 -4.38 16 25 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 26 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.08 1.06 6.58 -51.93 -0.34 0.72 16 28 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.11 1.47 6.88 -52.49 -0.36 1.11 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.30 6.28 8.29 -40.82 -0.34 5.94 16 33 H 0.11 2.24 4.74 -52.48 -0.25 1.99 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -25.46 297.04 -5.82 -31.28 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -2.60 Total: 2.35 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -4.97 Total: -14.19 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 1.41 Total: -36.06 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.17 Total: 13.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.46 -5.82 -31.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243783318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.773 kcal (2) G-P(sol) polarization free energy of solvation -25.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds