Wall clock time and date at job start Tue Mar 31 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37894 * 120.46950 * 2 1 4 4 N 1.31968 * 120.93604 * 180.02562 * 3 2 1 5 5 C 1.32114 * 122.02021 * 0.02562 * 4 3 2 6 6 F 1.35098 * 119.58602 * 179.97438 * 5 4 3 7 7 C 1.38279 * 120.83370 * 359.74699 * 5 4 3 8 8 C 1.39864 * 118.96929 * 0.48121 * 7 5 4 9 9 C 1.48074 * 120.90798 * 179.79568 * 8 7 5 10 10 C 1.39941 * 119.49436 * 129.70035 * 9 8 7 11 11 C 1.36045 * 121.19466 * 180.02562 * 10 9 8 12 12 C 1.41021 * 120.10539 * 359.97149 * 11 10 9 13 13 C 1.40484 * 120.49237 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00473 * 204.69925 * 13 12 11 15 15 C 1.40342 * 119.99959 * 24.70023 * 13 12 11 16 16 N 1.30604 * 120.00214 * 17.48211 * 15 13 12 17 17 Si 1.86799 * 120.00142 * 197.48564 * 15 13 12 18 18 H 1.48503 * 109.47237 * 89.99937 * 17 15 13 19 19 H 1.48497 * 109.47296 * 209.99699 * 17 15 13 20 20 H 1.48498 * 109.47142 * 329.99876 * 17 15 13 21 21 C 1.46630 * 119.01688 * 359.81070 * 12 11 10 22 22 C 1.43195 * 120.56521 * 180.24903 * 21 12 11 23 23 N 7.04132 * 92.54906 * 202.08876 * 2 1 3 24 24 C 1.39114 * 118.86423 * 0.45788 * 21 12 11 25 25 H 1.09005 * 109.47199 * 269.97442 * 1 2 3 26 26 H 1.09003 * 109.47565 * 29.98176 * 1 2 3 27 27 H 1.09003 * 109.46946 * 149.98013 * 1 2 3 28 28 H 1.08008 * 119.53041 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.51390 * 180.27838 * 7 5 4 30 30 H 1.07993 * 119.40148 * 359.97438 * 10 9 8 31 31 H 1.08006 * 119.94758 * 180.02562 * 11 10 9 32 32 H 0.97006 * 120.00562 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.09593 * 179.76495 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2062 1.1885 0.0000 4 7 3.5258 1.1993 -0.0005 5 6 4.2354 0.0849 -0.0015 6 9 5.5846 0.1532 -0.0025 7 6 3.6145 -1.1507 0.0031 8 6 2.2170 -1.2066 -0.0013 9 6 1.5078 -2.5065 -0.0011 10 6 0.4918 -2.7369 0.9332 11 6 -0.1819 -3.9184 0.9646 12 6 0.1371 -4.9392 0.0455 13 6 -0.5537 -6.1622 0.0703 14 1 -0.0871 -7.0541 -0.3209 15 6 -1.8504 -6.2250 0.6036 16 7 -2.5461 -5.1307 0.7594 17 14 -2.5812 -7.8736 1.0906 18 1 -2.2516 -8.1615 2.5097 19 1 -4.0562 -7.8299 0.9242 20 1 -2.0169 -8.9403 0.2252 21 6 1.1973 -4.7035 -0.9397 22 6 1.5446 -5.7150 -1.8918 23 7 1.8201 -6.5180 -2.6452 24 6 1.8629 -3.4819 -0.9306 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6661 2.1239 0.0004 29 1 4.1997 -2.0584 0.0068 30 1 0.2384 -1.9630 1.6426 31 1 -0.9629 -4.0745 1.6941 32 1 -3.4425 -5.1741 1.1277 33 1 2.6496 -3.2885 -1.6448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243785535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:13 Heat of formation + Delta-G solvation = 21.592329 kcal Electronic energy + Delta-G solvation = -20259.037206 eV Core-core repulsion = 16970.321830 eV Total energy + Delta-G solvation = -3288.715376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.74139 -39.95029 -37.85758 -35.35644 -34.70329 -33.09458 -31.94190 -30.10762 -29.68282 -26.94178 -26.01274 -23.44802 -22.38066 -21.81296 -20.81946 -18.14272 -17.81724 -17.02850 -16.32783 -15.82675 -15.66055 -14.99181 -14.55537 -14.31154 -14.04896 -13.68159 -13.38045 -13.22444 -12.98342 -12.83258 -12.31059 -12.14235 -12.05671 -11.87419 -11.79167 -11.64086 -11.48002 -11.40454 -10.97096 -10.77807 -10.19439 -10.09537 -9.81070 -9.38314 -9.27987 -8.53127 -7.96516 -7.73028 -7.37716 -4.94196 1.19506 1.28093 2.04805 2.47099 2.79560 2.84111 2.88803 3.52905 3.76226 3.81701 3.84551 4.04137 4.27957 4.81379 4.97677 5.12655 5.15179 5.25102 5.33667 5.62635 5.77076 5.84957 5.93292 6.01359 6.02125 6.23121 6.37204 6.46097 6.58827 6.61093 6.82522 6.91920 7.01503 7.28608 7.45152 7.56871 7.65603 7.89685 8.00824 8.18944 8.33539 8.68037 9.49208 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.004526 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.152225 B = 6184.449025 C = 7007.836665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.153 4.153 3 C 0.129 3.871 4 N -0.534 5.534 5 C 0.294 3.706 6 F -0.123 7.123 7 C -0.200 4.200 8 C 0.079 3.921 9 C -0.218 4.218 10 C -0.047 4.047 11 C -0.166 4.166 12 C 0.155 3.845 13 C -0.412 4.412 14 H 0.090 0.910 15 C 0.074 3.926 16 N -0.749 5.749 17 Si 0.918 3.082 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.256 1.256 21 C -0.188 4.188 22 C 0.298 3.702 23 N -0.503 5.503 24 C 0.008 3.992 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.143 0.857 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.295 0.705 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 6.988 3.510 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.155 4.155 3 C -0.027 4.027 4 N -0.249 5.249 5 C 0.142 3.858 6 F -0.102 7.102 7 C -0.221 4.221 8 C 0.072 3.928 9 C -0.220 4.220 10 C -0.067 4.067 11 C -0.185 4.185 12 C 0.149 3.851 13 C -0.438 4.438 14 H 0.108 0.892 15 C -0.151 4.151 16 N -0.369 5.369 17 Si 0.741 3.259 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.194 4.194 22 C -0.012 4.012 23 N -0.182 5.182 24 C -0.013 4.013 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.176 0.824 29 H 0.161 0.839 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.588 6.633 2.405 7.080 hybrid contribution -0.572 -1.001 0.496 1.255 sum 0.016 5.632 2.901 6.335 Atomic orbital electron populations 1.20748 0.89666 1.03392 1.02488 1.21097 0.98109 0.92921 1.03366 1.22176 0.87389 0.97729 0.95360 1.66857 1.09510 1.30819 1.17736 1.18013 0.78200 0.90126 0.99508 1.91572 1.27966 1.97047 1.93611 1.22000 0.95543 0.97215 1.07361 1.19052 0.90909 0.93457 0.89422 1.17507 1.05494 0.92970 1.06010 1.20412 0.93452 0.96679 0.96129 1.20919 1.02558 0.93793 1.01232 1.18513 0.87438 0.92322 0.86820 1.19934 0.97943 0.96064 1.29871 0.89202 1.26209 0.97040 0.99467 0.92397 1.69678 1.10427 1.30112 1.26713 0.86092 0.78460 0.80889 0.80500 1.18377 1.19502 1.17927 1.16715 1.09703 0.92234 1.00733 1.25680 0.91280 0.92288 0.91930 1.81005 1.12682 1.11158 1.13379 1.20504 0.95065 0.90622 0.95147 0.91118 0.92022 0.89785 0.82388 0.83906 0.88388 0.85427 0.89377 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.50 36.00 0.31 -1.02 16 2 C -0.15 -2.20 5.88 -104.09 -0.61 -2.81 16 3 C 0.13 1.78 10.85 -17.62 -0.19 1.58 16 4 N -0.53 -8.58 10.36 -13.69 -0.14 -8.73 16 5 C 0.29 4.76 8.40 -17.42 -0.15 4.62 16 6 F -0.12 -1.96 17.29 2.25 0.04 -1.92 16 7 C -0.20 -3.15 9.60 -38.96 -0.37 -3.52 16 8 C 0.08 1.28 5.46 -104.59 -0.57 0.71 16 9 C -0.22 -3.90 4.82 -104.82 -0.51 -4.41 16 10 C -0.05 -0.86 7.85 -39.73 -0.31 -1.17 16 11 C -0.17 -3.40 8.63 -39.31 -0.34 -3.74 16 12 C 0.15 3.42 5.74 -104.61 -0.60 2.82 16 13 C -0.41 -9.25 8.56 -37.95 -0.32 -9.58 16 14 H 0.09 2.06 7.38 -52.49 -0.39 1.67 16 15 C 0.07 1.53 5.15 -17.28 -0.09 1.44 16 16 N -0.75 -15.50 10.95 55.57 0.61 -14.89 16 17 Si 0.92 15.77 29.60 -169.99 -5.03 10.74 16 18 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 19 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 20 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 21 C -0.19 -4.00 5.93 -104.26 -0.62 -4.62 16 22 C 0.30 6.63 14.29 -22.51 -0.32 6.31 16 23 N -0.50 -11.63 18.53 41.80 0.77 -10.86 16 24 C 0.01 0.15 9.23 -38.85 -0.36 -0.21 16 25 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.08 1.23 6.58 -51.93 -0.34 0.88 16 28 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.10 1.59 6.88 -52.49 -0.36 1.23 16 31 H 0.13 2.66 6.17 -52.48 -0.32 2.33 16 32 H 0.29 5.43 8.29 -40.82 -0.34 5.09 16 33 H 0.10 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -23.97 302.04 -6.89 -30.85 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.63 Total: 3.84 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -5.06 Total: -13.59 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 1.24 Total: -34.47 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 15.77 SS G_CDS: -5.03 Total: 10.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -23.97 -6.89 -30.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243785535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.446 kcal (2) G-P(sol) polarization free energy of solvation -23.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds