Wall clock time and date at job start Tue Mar 31 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39931 * 119.96129 * 11.51034 * 3 2 1 5 5 C 1.36501 * 120.29838 * 179.69604 * 4 3 2 6 6 C 1.39745 * 120.21493 * 0.55404 * 5 4 3 7 7 C 1.47681 * 120.03742 * 179.71319 * 6 5 4 8 8 C 1.40181 * 119.88012 * 309.73569 * 7 6 5 9 9 C 1.36104 * 120.17598 * 179.97438 * 8 7 6 10 10 C 1.41007 * 119.91206 * 0.02562 * 9 8 7 11 11 C 1.40848 * 120.12317 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99835 * 205.40017 * 11 10 9 13 13 C 1.40020 * 120.00440 * 25.39358 * 11 10 9 14 14 N 1.30815 * 119.99514 * 26.58835 * 13 11 10 15 15 Si 1.86796 * 120.00441 * 206.58695 * 13 11 10 16 16 H 1.48503 * 109.47318 * 180.02562 * 15 13 11 17 17 H 1.48510 * 109.46894 * 299.99942 * 15 13 11 18 18 H 1.48502 * 109.47330 * 59.99930 * 15 13 11 19 19 C 1.41227 * 119.74954 * 0.24731 * 10 9 8 20 20 F 1.35104 * 120.08151 * 179.74989 * 19 10 9 21 21 C 1.36479 * 119.82894 * 359.46899 * 19 10 9 22 22 C 1.40461 * 119.92122 * 359.44733 * 6 5 4 23 23 N 1.39304 * 120.14787 * 180.29205 * 22 6 5 24 24 C 1.38478 * 119.70293 * 0.26815 * 22 6 5 25 25 H 1.08007 * 119.85082 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.89185 * 180.30216 * 5 4 3 27 27 H 1.08001 * 119.91054 * 359.96938 * 8 7 6 28 28 H 1.07995 * 120.04647 * 179.97438 * 9 8 7 29 29 H 0.96994 * 119.99989 * 5.88217 * 14 13 11 30 30 H 1.07994 * 119.96102 * 180.27136 * 21 19 10 31 31 H 0.97007 * 119.99779 * 0.02562 * 23 22 6 32 32 H 0.96998 * 120.00266 * 179.97438 * 23 22 6 33 33 H 1.07995 * 120.10821 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2674 -1.1870 -0.2419 5 6 4.6324 -1.1930 -0.2496 6 6 5.3423 -0.0145 -0.0044 7 6 6.8190 -0.0268 -0.0074 8 6 7.5110 -0.9839 0.7477 9 6 8.8719 -1.0010 0.7489 10 6 9.5878 -0.0533 -0.0111 11 6 10.9962 -0.0666 -0.0127 12 1 11.5445 0.8392 -0.2253 13 6 11.6854 -1.2542 0.2614 14 7 11.1239 -2.4089 0.0114 15 14 13.4068 -1.1897 0.9840 16 1 13.9141 -2.5717 1.1787 17 1 14.3063 -0.4590 0.0553 18 1 13.3687 -0.4870 2.2917 19 6 8.8872 0.9130 -0.7661 20 9 9.5663 1.8274 -1.4927 21 6 7.5224 0.9171 -0.7644 22 6 4.6496 1.1828 0.2395 23 7 5.3524 2.3615 0.4785 24 6 3.2648 1.1863 0.2408 25 1 2.7248 -2.1021 -0.4278 26 1 5.1655 -2.1124 -0.4419 27 1 6.9627 -1.7095 1.3302 28 1 9.4029 -1.7390 1.3318 29 1 10.2669 -2.4435 -0.4417 30 1 6.9845 1.6523 -1.3444 31 1 6.3225 2.3567 0.4764 32 1 4.8719 3.1873 0.6463 33 1 2.7256 2.1031 0.4279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244083894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:40 Heat of formation + Delta-G solvation = 9.868242 kcal Electronic energy + Delta-G solvation = -20206.417532 eV Core-core repulsion = 16917.193761 eV Total energy + Delta-G solvation = -3289.223770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.49887 -39.62938 -37.67374 -36.43994 -34.55355 -34.14248 -31.59621 -29.53070 -29.30994 -28.41642 -25.68502 -23.25135 -22.24329 -21.16340 -20.70643 -18.72563 -18.30287 -16.78361 -16.58318 -15.41124 -15.12786 -14.99895 -14.57382 -14.31943 -14.19873 -14.06700 -13.92161 -13.59579 -13.13569 -12.86194 -12.73389 -12.58608 -12.49700 -11.93379 -11.73593 -11.37939 -11.21923 -10.92178 -10.81402 -10.55034 -10.47687 -10.17110 -9.80351 -9.31366 -8.73246 -7.99830 -7.85217 -7.51662 -7.16898 -4.71730 0.90586 1.77514 2.32219 2.48700 2.73221 3.00169 3.03800 3.20251 3.22594 3.78989 3.92107 4.08140 4.25203 4.28950 4.98587 5.09516 5.24776 5.32972 5.60248 5.70089 5.76372 5.92657 6.03798 6.08599 6.34429 6.48019 6.55425 6.64534 6.80710 6.91548 7.06326 7.23088 7.40928 7.50369 7.55401 7.58463 7.69594 7.72980 7.91176 8.01089 8.34772 8.47605 9.68222 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033197 B = 0.003871 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.243544 B = 7231.746954 C = 7776.039718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.268 3.732 3 C -0.017 4.017 4 C -0.120 4.120 5 C -0.085 4.085 6 C -0.030 4.030 7 C -0.195 4.195 8 C -0.057 4.057 9 C -0.209 4.209 10 C 0.074 3.926 11 C -0.488 4.488 12 H 0.085 0.915 13 C 0.038 3.962 14 N -0.770 5.770 15 Si 1.067 2.933 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.271 1.271 19 C -0.033 4.033 20 F -0.162 7.162 21 C -0.094 4.094 22 C 0.210 3.790 23 N -0.872 5.872 24 C -0.151 4.151 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.303 0.697 30 H 0.106 0.894 31 H 0.407 0.593 32 H 0.392 0.608 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 3.011 1.520 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.046 4.046 3 C -0.021 4.021 4 C -0.142 4.142 5 C -0.103 4.103 6 C -0.035 4.035 7 C -0.197 4.197 8 C -0.075 4.075 9 C -0.229 4.229 10 C 0.070 3.930 11 C -0.514 4.514 12 H 0.103 0.897 13 C -0.187 4.187 14 N -0.391 5.391 15 Si 0.889 3.111 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.053 4.053 20 F -0.141 7.141 21 C -0.114 4.114 22 C 0.104 3.896 23 N -0.413 5.413 24 C -0.177 4.177 25 H 0.140 0.860 26 H 0.148 0.852 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.240 0.760 32 H 0.220 0.780 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.637 2.008 2.035 6.320 hybrid contribution -0.615 1.466 -0.703 1.739 sum -6.252 3.474 1.332 7.275 Atomic orbital electron populations 1.81197 1.12299 1.08257 1.10148 1.25899 0.92819 0.92958 0.92915 1.15639 0.83472 0.95038 1.07971 1.20494 0.94237 0.96187 1.03331 1.20749 0.92853 0.97933 0.98813 1.18629 0.92964 0.91313 1.00583 1.17555 0.89349 1.03044 1.09715 1.20456 0.94006 0.96037 0.97038 1.20660 0.93255 1.04327 1.04618 1.17742 0.93851 0.91201 0.90162 1.20682 0.91785 0.99179 1.39797 0.89657 1.27244 1.06768 0.91151 0.93557 1.70466 1.18181 1.27561 1.22930 0.83597 0.72385 0.77583 0.77537 1.19469 1.19740 1.19592 1.17287 0.89145 0.96767 1.02070 1.91298 1.80887 1.65431 1.76501 1.20307 0.92173 0.99001 0.99892 1.17608 0.90049 0.87469 0.94464 1.42636 1.09997 1.07510 1.81164 1.20318 0.91949 0.97174 1.08256 0.85986 0.85228 0.88189 0.86829 0.88268 0.87637 0.76004 0.78026 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.76 18.54 41.84 0.78 -5.99 16 2 C 0.27 3.65 15.32 -22.47 -0.34 3.31 16 3 C -0.02 -0.22 5.74 -106.82 -0.61 -0.83 16 4 C -0.12 -1.50 9.68 -39.57 -0.38 -1.88 16 5 C -0.08 -1.19 9.43 -39.65 -0.37 -1.56 16 6 C -0.03 -0.47 5.49 -104.64 -0.57 -1.04 16 7 C -0.20 -3.62 5.10 -104.67 -0.53 -4.15 16 8 C -0.06 -1.11 9.43 -39.62 -0.37 -1.48 16 9 C -0.21 -4.65 7.91 -39.30 -0.31 -4.96 16 10 C 0.07 1.78 5.30 -106.73 -0.57 1.21 16 11 C -0.49 -11.91 8.68 -37.93 -0.33 -12.23 16 12 H 0.09 2.08 7.80 -52.49 -0.41 1.67 16 13 C 0.04 0.86 4.90 -17.32 -0.08 0.78 16 14 N -0.77 -18.37 12.31 55.55 0.68 -17.69 16 15 Si 1.07 19.46 30.01 -169.99 -5.10 14.36 16 16 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 17 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 19 C -0.03 -0.74 7.25 -39.08 -0.28 -1.03 16 20 F -0.16 -3.76 16.70 2.25 0.04 -3.72 16 21 C -0.09 -1.86 7.59 -39.57 -0.30 -2.16 16 22 C 0.21 2.94 6.67 -83.54 -0.56 2.39 16 23 N -0.87 -10.97 8.60 32.56 0.28 -10.69 16 24 C -0.15 -1.90 9.59 -38.98 -0.37 -2.27 16 25 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 26 H 0.13 1.72 8.03 -52.49 -0.42 1.30 16 27 H 0.10 1.75 8.03 -52.49 -0.42 1.32 16 28 H 0.11 2.60 6.52 -52.49 -0.34 2.26 16 29 H 0.30 7.38 6.79 -40.82 -0.28 7.11 16 30 H 0.11 1.90 7.46 -52.49 -0.39 1.51 16 31 H 0.41 5.74 5.96 -40.82 -0.24 5.49 16 32 H 0.39 3.76 8.84 -40.82 -0.36 3.40 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -25.24 301.07 -7.29 -32.54 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -2.51 Total: 12.58 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -6.00 Total: -25.93 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 1.74 Total: -34.36 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.10 Total: 14.36 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.24 -7.29 -32.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244083894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.405 kcal (2) G-P(sol) polarization free energy of solvation -25.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds