Wall clock time and date at job start Tue Mar 31 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39939 * 119.95613 * 337.65696 * 3 2 1 5 5 C 1.36493 * 120.30033 * 179.76259 * 4 3 2 6 6 C 1.39793 * 120.21222 * 0.46747 * 5 4 3 7 7 C 1.47554 * 120.04285 * 179.78261 * 6 5 4 8 8 C 1.39252 * 120.33256 * 64.72586 * 7 6 5 9 9 C 1.38284 * 119.94157 * 179.97438 * 8 7 6 10 10 F 1.35102 * 119.67792 * 180.02562 * 9 8 7 11 11 C 1.39282 * 120.63643 * 359.97438 * 9 8 7 12 12 C 1.36302 * 120.69306 * 0.02562 * 11 9 8 13 13 C 1.40826 * 120.02361 * 0.23943 * 12 11 9 14 14 C 1.40715 * 120.31319 * 179.72482 * 13 12 11 15 15 H 1.07996 * 119.99714 * 205.23177 * 14 13 12 16 16 C 1.40073 * 119.99823 * 25.22564 * 14 13 12 17 17 N 1.30783 * 120.00213 * 17.35618 * 16 14 13 18 18 Si 1.86800 * 119.99952 * 197.35743 * 16 14 13 19 19 H 1.48497 * 109.47063 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47387 * 119.99798 * 18 16 14 21 21 H 1.48503 * 109.46942 * 240.00207 * 18 16 14 22 22 C 1.40506 * 119.91031 * 359.51396 * 6 5 4 23 23 N 1.39311 * 120.14480 * 180.27280 * 22 6 5 24 24 C 1.38462 * 119.70299 * 0.24933 * 22 6 5 25 25 H 1.07998 * 119.84799 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.89292 * 180.25115 * 5 4 3 27 27 H 1.07997 * 120.02917 * 359.97438 * 8 7 6 28 28 H 1.08000 * 119.65167 * 180.02562 * 11 9 8 29 29 H 1.07995 * 119.98829 * 179.97438 * 12 11 9 30 30 H 0.97002 * 120.00216 * 180.02562 * 17 16 14 31 31 H 0.96996 * 120.00305 * 0.02562 * 23 22 6 32 32 H 0.97000 * 119.99327 * 179.97438 * 23 22 6 33 33 H 1.07993 * 120.10650 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 -1.1205 0.4609 5 6 4.6322 -1.1293 0.4595 6 6 5.3424 -0.0138 0.0064 7 6 6.8179 -0.0255 0.0110 8 6 7.5166 -0.9155 -0.8007 9 6 8.8994 -0.9193 -0.7904 10 9 9.5719 -1.7847 -1.5804 11 6 9.6055 -0.0388 0.0258 12 6 8.9479 0.8432 0.8305 13 6 7.5399 0.8677 0.8466 14 6 6.8548 1.7717 1.6793 15 1 5.8516 1.5472 2.0101 16 6 7.4741 2.9628 2.0792 17 7 8.5222 3.4038 1.4331 18 14 6.8031 3.9212 3.5354 19 1 5.6197 3.2156 4.0895 20 1 7.8507 4.0290 4.5823 21 1 6.4048 5.2813 3.0917 22 6 4.6493 1.1165 -0.4588 23 7 5.3522 2.2287 -0.9168 24 6 3.2647 1.1197 -0.4603 25 1 2.7245 -1.9839 0.8161 26 1 5.1652 -1.9996 0.8129 27 1 6.9790 -1.6023 -1.4377 28 1 10.6853 -0.0551 0.0210 29 1 9.5067 1.5206 1.4591 30 1 8.9513 4.2285 1.7103 31 1 6.3221 2.2238 -0.9154 32 1 4.8715 3.0077 -1.2378 33 1 2.7254 1.9851 -0.8160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244089162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:32 Heat of formation + Delta-G solvation = 15.374082 kcal Electronic energy + Delta-G solvation = -20776.750398 eV Core-core repulsion = 17487.765378 eV Total energy + Delta-G solvation = -3288.985019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.57357 -39.37104 -37.42992 -36.14790 -34.03588 -33.76433 -31.79625 -29.62563 -29.10963 -27.93695 -25.34579 -23.57598 -21.82373 -21.17873 -20.32696 -18.43185 -17.58305 -16.56401 -16.36847 -15.60011 -15.05661 -14.71250 -14.56955 -14.31770 -14.08076 -13.86694 -13.70632 -13.33883 -12.94648 -12.59974 -12.55239 -12.39033 -12.15671 -11.90317 -11.46750 -11.41032 -11.27324 -10.95638 -10.82527 -10.50836 -10.14357 -10.09653 -9.68181 -9.37771 -8.42234 -7.79642 -7.54654 -7.11627 -6.81822 -4.61074 1.19992 2.08870 2.41742 2.60356 2.91043 2.93555 2.96412 2.99872 3.38302 3.72204 4.17844 4.27668 4.41404 4.64456 5.20610 5.36800 5.46745 5.57841 5.82275 5.91799 5.97085 6.07915 6.29121 6.30341 6.63956 6.71855 6.76566 6.87985 6.93634 7.00242 7.19035 7.24088 7.50410 7.66515 7.73612 7.74971 7.94148 8.12401 8.30689 8.46890 8.54198 8.62647 9.82981 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.007533 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.348775 B = 3716.228737 C = 5530.209995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.272 3.728 3 C -0.012 4.012 4 C -0.132 4.132 5 C -0.080 4.080 6 C -0.027 4.027 7 C -0.173 4.173 8 C -0.091 4.091 9 C -0.048 4.048 10 F -0.174 7.174 11 C -0.124 4.124 12 C -0.138 4.138 13 C 0.118 3.882 14 C -0.431 4.431 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.781 5.781 18 Si 0.905 3.095 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.273 1.273 22 C 0.239 3.761 23 N -0.853 5.853 24 C -0.164 4.164 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.285 0.715 31 H 0.414 0.586 32 H 0.388 0.612 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -0.619 -0.855 2.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.043 4.043 3 C -0.016 4.016 4 C -0.155 4.155 5 C -0.099 4.099 6 C -0.033 4.033 7 C -0.175 4.175 8 C -0.110 4.110 9 C -0.068 4.068 10 F -0.153 7.153 11 C -0.143 4.143 12 C -0.157 4.157 13 C 0.114 3.886 14 C -0.459 4.459 15 H 0.104 0.896 16 C -0.142 4.142 17 N -0.405 5.405 18 Si 0.729 3.271 19 H -0.180 1.180 20 H -0.196 1.196 21 H -0.199 1.199 22 C 0.131 3.869 23 N -0.389 5.389 24 C -0.190 4.190 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.096 0.904 31 H 0.246 0.754 32 H 0.215 0.785 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.564 -0.433 -0.889 3.699 hybrid contribution 0.599 0.756 0.434 1.058 sum -2.965 0.323 -0.455 3.017 Atomic orbital electron populations 1.81171 1.12382 1.08783 1.10206 1.25970 0.92896 0.92689 0.92697 1.15652 0.83277 0.96572 1.06147 1.20384 0.94219 0.97064 1.03867 1.20724 0.92810 0.97974 0.98382 1.18405 0.92767 0.92244 0.99863 1.18183 0.89816 1.05324 1.04184 1.20563 0.91723 0.99058 0.99686 1.17181 0.89759 0.98080 1.01767 1.91295 1.80985 1.69244 1.73802 1.20510 0.98446 0.97003 0.98348 1.20954 0.94594 0.99245 1.00930 1.17592 0.91358 0.90251 0.89352 1.19563 1.01551 1.00931 1.23879 0.89621 1.25974 0.93934 0.97814 0.96469 1.69767 1.17030 1.19304 1.34394 0.86282 0.80340 0.79326 0.81184 1.18038 1.19558 1.19866 1.17594 0.89680 0.88012 0.91608 1.42476 1.10357 1.15271 1.70843 1.20308 0.92173 0.98382 1.08105 0.86366 0.85672 0.87838 0.88236 0.85490 0.90380 0.75394 0.78483 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.52 18.54 41.84 0.78 -6.74 16 2 C 0.27 4.15 15.32 -22.47 -0.34 3.81 16 3 C -0.01 -0.18 5.74 -106.81 -0.61 -0.80 16 4 C -0.13 -1.90 9.68 -39.57 -0.38 -2.28 16 5 C -0.08 -1.26 9.66 -39.63 -0.38 -1.65 16 6 C -0.03 -0.49 4.39 -104.66 -0.46 -0.95 16 7 C -0.17 -3.48 4.54 -104.27 -0.47 -3.96 16 8 C -0.09 -1.84 9.70 -39.19 -0.38 -2.22 16 9 C -0.05 -1.02 7.30 -39.18 -0.29 -1.31 16 10 F -0.17 -3.66 17.26 2.25 0.04 -3.62 16 11 C -0.12 -2.63 9.94 -39.89 -0.40 -3.02 16 12 C -0.14 -3.05 8.62 -39.30 -0.34 -3.39 16 13 C 0.12 2.56 4.72 -106.53 -0.50 2.06 16 14 C -0.43 -9.32 7.09 -37.96 -0.27 -9.59 16 15 H 0.09 1.89 7.11 -52.49 -0.37 1.52 16 16 C 0.08 1.64 5.14 -17.31 -0.09 1.55 16 17 N -0.78 -16.71 10.97 55.55 0.61 -16.10 16 18 Si 0.90 16.47 29.59 -169.99 -5.03 11.44 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 C 0.24 3.97 6.07 -83.52 -0.51 3.47 16 23 N -0.85 -13.57 8.37 32.57 0.27 -13.30 16 24 C -0.16 -2.44 9.59 -38.98 -0.37 -2.81 16 25 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 26 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 29 H 0.13 2.89 6.18 -52.49 -0.32 2.56 16 30 H 0.29 5.62 8.30 -40.82 -0.34 5.29 16 31 H 0.41 7.53 6.62 -40.82 -0.27 7.26 16 32 H 0.39 5.06 8.84 -40.82 -0.36 4.70 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -23.28 300.88 -7.18 -30.46 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -2.58 Total: 14.41 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -5.80 Total: -21.09 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 1.66 Total: -36.14 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -23.28 -7.18 -30.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244089162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.836 kcal (2) G-P(sol) polarization free energy of solvation -23.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds