Wall clock time and date at job start Tue Mar 31 2020 05:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39818 * 119.99544 * 316.57672 * 3 2 1 5 5 C 1.37650 * 120.12504 * 180.02562 * 4 3 2 6 6 C 1.39440 * 120.11378 * 0.02976 * 5 4 3 7 7 C 1.48190 * 120.00607 * 179.97438 * 6 5 4 8 8 C 1.39690 * 120.02284 * 65.02021 * 7 6 5 9 9 C 1.38440 * 120.40968 * 179.97438 * 8 7 6 10 10 C 1.37681 * 120.46391 * 0.02562 * 9 8 7 11 11 C 1.40755 * 120.03927 * 0.02562 * 10 9 8 12 12 C 1.41317 * 120.20253 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00375 * 204.65135 * 12 11 10 14 14 C 1.39938 * 120.00109 * 24.64518 * 12 11 10 15 15 N 1.30845 * 119.99763 * 17.81589 * 14 12 11 16 16 Si 1.86801 * 120.00203 * 197.81286 * 14 12 11 17 17 H 1.48494 * 109.47115 * 94.68727 * 16 14 12 18 18 H 1.48498 * 109.47132 * 214.69202 * 16 14 12 19 19 H 1.48503 * 109.46784 * 334.69203 * 16 14 12 20 20 C 1.39173 * 120.02754 * 244.74390 * 7 6 5 21 21 F 1.35096 * 120.22884 * 0.02562 * 20 7 6 22 22 C 1.40106 * 119.98842 * 359.97037 * 6 5 4 23 23 N 1.39551 * 120.06375 * 179.97438 * 22 6 5 24 24 C 1.38415 * 119.87236 * 0.25836 * 22 6 5 25 25 H 1.08000 * 119.93536 * 359.97438 * 4 3 2 26 26 H 1.08007 * 119.94237 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.79761 * 359.97438 * 8 7 6 28 28 H 1.07997 * 119.76694 * 180.02562 * 9 8 7 29 29 H 1.08000 * 119.98036 * 179.97438 * 10 9 8 30 30 H 0.97001 * 120.00070 * 180.02562 * 15 14 12 31 31 H 0.97003 * 120.00022 * 0.02562 * 23 22 6 32 32 H 0.96999 * 119.99743 * 180.02562 * 23 22 6 33 33 H 1.08004 * 120.05990 * 179.73629 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2674 -0.8785 0.8324 5 6 4.6438 -0.8798 0.8349 6 6 5.3458 -0.0038 0.0077 7 6 6.8277 -0.0068 0.0128 8 6 7.5258 -1.1325 -0.4306 9 6 8.9102 -1.1438 -0.4298 10 6 9.6170 -0.0465 0.0082 11 6 8.9330 1.0977 0.4601 12 6 9.6550 2.2258 0.9110 13 1 9.1988 2.9174 1.6037 14 6 10.9611 2.4466 0.4599 15 7 11.3935 1.8389 -0.6152 16 14 12.0873 3.6091 1.3925 17 1 12.9194 2.8329 2.3466 18 1 12.9687 4.3209 0.4325 19 1 11.2690 4.5975 2.1400 20 6 7.5249 1.1140 0.4538 21 9 6.8554 2.2077 0.8791 22 6 4.6498 0.8792 -0.8283 23 7 5.3507 1.7570 -1.6563 24 6 3.2656 0.8833 -0.8269 25 1 2.7265 -1.5573 1.4751 26 1 5.1811 -1.5605 1.4787 27 1 6.9823 -1.9995 -0.7762 28 1 9.4394 -2.0196 -0.7753 29 1 10.6968 -0.0639 0.0058 30 1 12.2990 1.9917 -0.9276 31 1 6.3207 1.7559 -1.6538 32 1 4.8678 2.3681 -2.2345 33 1 2.7260 1.5657 -1.4670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244089763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:25 Heat of formation + Delta-G solvation = 16.278603 kcal Electronic energy + Delta-G solvation = -20534.863813 eV Core-core repulsion = 17245.918016 eV Total energy + Delta-G solvation = -3288.945796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.34621 -39.47092 -37.36556 -36.40237 -34.23208 -33.97092 -31.77607 -29.78446 -29.01138 -27.94295 -25.46459 -23.78481 -22.09604 -20.93607 -20.56378 -18.70162 -17.55560 -16.72109 -16.15245 -15.48011 -15.42342 -15.23384 -14.58349 -14.21270 -14.00250 -13.89122 -13.76186 -13.55660 -12.97048 -12.85140 -12.61820 -12.51101 -12.01863 -11.87509 -11.65043 -11.33087 -11.23812 -11.10054 -10.76667 -10.54404 -10.38817 -9.98295 -9.71004 -9.39122 -8.66581 -7.72386 -7.53992 -7.12271 -6.96888 -4.56759 0.95253 1.78109 2.48699 2.53636 2.72929 2.97878 3.02606 3.03847 3.17420 3.79742 3.92522 4.13159 4.30754 4.37306 5.05426 5.21222 5.26449 5.38357 5.60805 5.75293 5.87852 6.04586 6.11297 6.30824 6.44523 6.49597 6.67990 6.72419 6.91785 6.94716 7.01925 7.33934 7.44522 7.54855 7.74869 7.76366 7.82120 7.92951 8.09730 8.37300 8.58330 8.66540 9.96262 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030927 B = 0.004296 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.127385 B = 6515.976064 C = 6893.568806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.268 3.732 3 C 0.000 4.000 4 C -0.131 4.131 5 C -0.065 4.065 6 C -0.063 4.063 7 C -0.066 4.066 8 C -0.198 4.198 9 C -0.111 4.111 10 C -0.141 4.141 11 C 0.085 3.915 12 C -0.453 4.453 13 H 0.084 0.916 14 C 0.077 3.923 15 N -0.788 5.788 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.015 4.015 21 F -0.156 7.156 22 C 0.234 3.766 23 N -0.864 5.864 24 C -0.159 4.159 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.284 0.716 31 H 0.410 0.590 32 H 0.394 0.606 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -2.490 -0.888 5.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.047 4.047 3 C -0.004 4.004 4 C -0.154 4.154 5 C -0.084 4.084 6 C -0.069 4.069 7 C -0.067 4.067 8 C -0.218 4.218 9 C -0.130 4.130 10 C -0.161 4.161 11 C 0.082 3.918 12 C -0.482 4.482 13 H 0.102 0.898 14 C -0.142 4.142 15 N -0.412 5.412 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.036 4.036 21 F -0.135 7.135 22 C 0.127 3.873 23 N -0.401 5.401 24 C -0.185 4.185 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.222 0.778 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.212 -2.450 -1.033 6.757 hybrid contribution 1.148 0.957 0.133 1.501 sum -5.064 -1.493 -0.901 5.356 Atomic orbital electron populations 1.81196 1.12253 1.08953 1.09058 1.25867 0.92788 0.92998 0.93001 1.15659 0.83511 1.00239 1.01028 1.20727 0.93992 1.00183 1.00505 1.20915 0.92791 0.97504 0.97169 1.18648 0.93048 0.97319 0.97880 1.18152 0.89538 0.94608 1.04448 1.20274 0.93627 0.97161 1.10717 1.20679 0.93568 0.97851 1.00904 1.21276 1.00081 0.91449 1.03276 1.17557 0.88735 0.93878 0.91646 1.19543 0.97433 1.07546 1.23662 0.89838 1.25907 0.98454 0.96131 0.93683 1.69799 1.18073 1.36228 1.17122 0.86223 0.79722 0.80361 0.80120 1.19123 1.20118 1.18368 1.17887 0.89971 0.84173 1.11537 1.91301 1.80511 1.52942 1.88711 1.17532 0.90105 0.89660 0.90014 1.42565 1.10128 1.41487 1.45956 1.20313 0.91897 1.02617 1.03636 0.85710 0.84999 0.88220 0.88508 0.85653 0.90513 0.75890 0.77800 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.76 18.54 41.84 0.78 -5.98 16 2 C 0.27 3.71 15.32 -22.47 -0.34 3.36 16 3 C 0.00 0.00 5.74 -106.86 -0.61 -0.62 16 4 C -0.13 -1.68 9.73 -39.21 -0.38 -2.07 16 5 C -0.06 -0.95 9.70 -39.35 -0.38 -1.33 16 6 C -0.06 -1.08 5.02 -104.66 -0.53 -1.60 16 7 C -0.07 -1.31 4.52 -104.92 -0.47 -1.79 16 8 C -0.20 -3.83 9.73 -38.96 -0.38 -4.20 16 9 C -0.11 -2.27 10.01 -39.71 -0.40 -2.67 16 10 C -0.14 -3.26 8.69 -38.83 -0.34 -3.60 16 11 C 0.09 2.07 5.57 -106.80 -0.60 1.47 16 12 C -0.45 -11.25 8.78 -37.78 -0.33 -11.58 16 13 H 0.08 2.08 7.74 -52.49 -0.41 1.68 16 14 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 15 N -0.79 -18.55 10.96 55.55 0.61 -17.94 16 16 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 17 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 18 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 20 C -0.02 -0.34 6.07 -38.26 -0.23 -0.58 16 21 F -0.16 -3.56 15.89 2.25 0.04 -3.53 16 22 C 0.23 3.63 6.53 -83.58 -0.55 3.08 16 23 N -0.86 -12.66 8.77 32.53 0.29 -12.37 16 24 C -0.16 -2.14 9.58 -39.00 -0.37 -2.51 16 25 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.13 2.99 6.16 -52.49 -0.32 2.67 16 30 H 0.28 6.07 8.30 -40.82 -0.34 5.73 16 31 H 0.41 6.93 6.78 -40.82 -0.28 6.65 16 32 H 0.39 4.51 8.84 -40.82 -0.36 4.15 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -25.69 303.30 -7.37 -33.06 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -2.62 Total: 12.63 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -6.00 Total: -22.92 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 1.67 Total: -36.30 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.69 -7.37 -33.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244089763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.336 kcal (2) G-P(sol) polarization free energy of solvation -25.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds