Wall clock time and date at job start Tue Mar 31 2020 05:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39810 * 119.99574 * 55.96355 * 3 2 1 5 5 C 1.37655 * 120.13097 * 179.72005 * 4 3 2 6 6 C 1.39441 * 120.10714 * 0.51080 * 5 4 3 7 7 C 1.48194 * 120.00252 * 179.76911 * 6 5 4 8 8 C 1.39916 * 119.97553 * 129.97572 * 7 6 5 9 9 C 1.38207 * 120.41088 * 180.29628 * 8 7 6 10 10 C 1.38084 * 120.35457 * 359.44679 * 9 8 7 11 11 F 1.35104 * 120.02865 * 180.29664 * 10 9 8 12 12 C 1.41053 * 119.94401 * 0.27445 * 10 9 8 13 13 C 1.41316 * 120.20556 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00370 * 334.65567 * 13 12 10 15 15 C 1.39917 * 120.00178 * 154.65463 * 13 12 10 16 16 N 1.30856 * 119.99568 * 342.93113 * 15 13 12 17 17 Si 1.86792 * 120.00208 * 162.93003 * 15 13 12 18 18 H 1.48501 * 109.47100 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47702 * 120.00230 * 17 15 13 20 20 H 1.48507 * 109.47228 * 240.00414 * 17 15 13 21 21 C 1.38780 * 119.97561 * 309.71682 * 7 6 5 22 22 C 1.40102 * 119.98457 * 359.48711 * 6 5 4 23 23 N 1.39540 * 120.06258 * 180.27528 * 22 6 5 24 24 C 1.38438 * 119.87748 * 0.25731 * 22 6 5 25 25 H 1.08000 * 119.93772 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.94434 * 180.27946 * 5 4 3 27 27 H 1.08005 * 119.79722 * 0.02562 * 8 7 6 28 28 H 1.07999 * 119.81970 * 179.72305 * 9 8 7 29 29 H 0.97007 * 120.00094 * 180.02562 * 16 15 13 30 30 H 1.08003 * 120.17339 * 0.02562 * 21 7 6 31 31 H 0.97000 * 119.99238 * 0.02562 * 23 22 6 32 32 H 0.96995 * 120.00282 * 180.02562 * 23 22 6 33 33 H 1.07993 * 120.05686 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -0.6768 -1.0034 5 6 4.6437 -0.6732 -1.0094 6 6 5.3458 -0.0026 -0.0084 7 6 6.8277 -0.0045 -0.0142 8 6 7.5288 1.1995 0.1138 9 6 8.9108 1.2088 0.1034 10 6 9.6157 0.0281 -0.0221 11 9 10.9666 0.0442 -0.0254 12 6 8.9241 -1.1950 -0.1463 13 6 9.6399 -2.4067 -0.2745 14 1 10.6408 -2.4023 -0.6802 15 6 9.0520 -3.6121 0.1242 16 7 8.0045 -3.6012 0.9084 17 14 9.7624 -5.2369 -0.4628 18 1 10.9378 -4.9777 -1.3327 19 1 10.1834 -6.0455 0.7093 20 1 8.7311 -5.9791 -1.2316 21 6 7.5191 -1.2012 -0.1412 22 6 4.6498 0.6778 0.9993 23 7 5.3507 1.3542 1.9985 24 6 3.2655 0.6782 1.0017 25 1 2.7264 -1.2005 -1.7777 26 1 5.1808 -1.1937 -1.7884 27 1 6.9867 2.1279 0.2170 28 1 9.4423 2.1442 0.1984 29 1 7.5971 -4.4369 1.1852 30 1 6.9799 -2.1321 -0.2364 31 1 6.3207 1.3538 1.9955 32 1 4.8680 1.8246 2.6960 33 1 2.7261 1.2014 1.7774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244090302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:34 Heat of formation + Delta-G solvation = 16.078250 kcal Electronic energy + Delta-G solvation = -20374.853813 eV Core-core repulsion = 17085.899329 eV Total energy + Delta-G solvation = -3288.954484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.34216 -39.57162 -37.40707 -36.31816 -34.34915 -33.82760 -31.79341 -29.94938 -28.95426 -27.86790 -25.56213 -23.59058 -22.18186 -21.28264 -20.28535 -18.66989 -17.57825 -16.76314 -16.08167 -15.72001 -15.25228 -15.22511 -14.56370 -14.20455 -14.09565 -13.88143 -13.55608 -13.52494 -12.94725 -12.78805 -12.59077 -12.52091 -12.19448 -11.91613 -11.72250 -11.31304 -11.24728 -11.05308 -10.79658 -10.51828 -10.37045 -10.05723 -9.71039 -9.41316 -8.67742 -7.77485 -7.64345 -7.03809 -6.90968 -4.57703 0.95700 1.80759 2.42424 2.60003 2.75935 2.98990 3.00220 3.05326 3.24053 3.79998 3.95007 4.15482 4.29726 4.39209 5.07851 5.23666 5.30952 5.40003 5.66094 5.76719 5.88708 5.99540 6.09678 6.28633 6.36693 6.52937 6.68925 6.74449 6.93790 6.95397 7.04625 7.29287 7.39898 7.57999 7.68507 7.73928 7.79953 7.90881 8.08170 8.34013 8.56880 8.64302 9.95652 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.005210 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.751313 B = 5373.023090 C = 6600.827778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.269 3.731 3 C -0.006 4.006 4 C -0.125 4.125 5 C -0.069 4.069 6 C -0.054 4.054 7 C -0.051 4.051 8 C -0.218 4.218 9 C -0.119 4.119 10 C -0.027 4.027 11 F -0.163 7.163 12 C 0.086 3.914 13 C -0.450 4.450 14 H 0.085 0.915 15 C 0.076 3.924 16 N -0.784 5.784 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.269 1.269 21 C -0.121 4.121 22 C 0.224 3.776 23 N -0.871 5.871 24 C -0.157 4.157 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.285 0.715 30 H 0.131 0.869 31 H 0.410 0.590 32 H 0.392 0.608 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 4.199 -0.030 5.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.046 4.046 3 C -0.010 4.010 4 C -0.148 4.148 5 C -0.088 4.088 6 C -0.059 4.059 7 C -0.052 4.052 8 C -0.237 4.237 9 C -0.138 4.138 10 C -0.048 4.048 11 F -0.142 7.142 12 C 0.082 3.918 13 C -0.479 4.479 14 H 0.103 0.897 15 C -0.143 4.143 16 N -0.408 5.408 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.194 1.194 21 C -0.140 4.140 22 C 0.118 3.882 23 N -0.412 5.412 24 C -0.183 4.183 25 H 0.142 0.858 26 H 0.151 0.849 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.243 0.757 32 H 0.219 0.781 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.121 4.019 0.094 7.323 hybrid contribution 1.128 -0.565 0.203 1.278 sum -4.993 3.453 0.298 6.078 Atomic orbital electron populations 1.81193 1.12284 1.09433 1.08761 1.25881 0.92807 0.92956 0.92952 1.15641 0.83489 1.03268 0.98583 1.20757 0.94067 1.01440 0.98551 1.20976 0.92805 0.97300 0.97683 1.18774 0.93389 0.98984 0.94733 1.18366 0.89383 0.94088 1.03358 1.20182 0.92572 0.95902 1.15081 1.20417 0.94371 0.95588 1.03405 1.17957 0.75971 0.94970 1.15870 1.91281 1.30357 1.97417 1.95151 1.17566 0.92302 0.91156 0.90727 1.19586 1.01936 0.90449 1.35880 0.89721 1.25923 0.94228 1.01623 0.92525 1.69801 1.18075 1.30096 1.22848 0.86187 0.80219 0.80388 0.79672 1.18181 1.19771 1.19397 1.21311 0.93021 0.96150 1.03557 1.17492 0.90060 0.91705 0.88949 1.42766 1.10236 1.58953 1.29258 1.20294 0.91933 1.05415 1.00644 0.85752 0.84889 0.87990 0.87934 0.90410 0.85120 0.75659 0.78068 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.86 18.54 41.84 0.78 -6.08 16 2 C 0.27 3.75 15.32 -22.47 -0.34 3.40 16 3 C -0.01 -0.08 5.73 -106.87 -0.61 -0.69 16 4 C -0.13 -1.66 9.73 -39.21 -0.38 -2.04 16 5 C -0.07 -1.04 9.47 -39.35 -0.37 -1.41 16 6 C -0.05 -0.90 5.49 -104.66 -0.57 -1.47 16 7 C -0.05 -1.01 5.07 -104.98 -0.53 -1.54 16 8 C -0.22 -4.08 7.69 -38.97 -0.30 -4.38 16 9 C -0.12 -2.41 9.99 -39.65 -0.40 -2.80 16 10 C -0.03 -0.64 7.31 -38.57 -0.28 -0.92 16 11 F -0.16 -3.88 16.71 2.25 0.04 -3.84 16 12 C 0.09 2.11 5.57 -106.81 -0.59 1.51 16 13 C -0.45 -11.24 8.77 -37.78 -0.33 -11.57 16 14 H 0.08 2.12 7.74 -52.48 -0.41 1.71 16 15 C 0.08 1.77 5.15 -17.34 -0.09 1.68 16 16 N -0.78 -18.54 10.97 55.55 0.61 -17.93 16 17 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 C -0.12 -2.74 8.12 -38.53 -0.31 -3.05 16 22 C 0.22 3.28 6.66 -83.58 -0.56 2.73 16 23 N -0.87 -11.24 8.60 32.53 0.28 -10.96 16 24 C -0.16 -2.04 9.58 -39.00 -0.37 -2.42 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.13 1.94 8.03 -52.49 -0.42 1.52 16 27 H 0.10 1.68 7.43 -52.48 -0.39 1.29 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 30 H 0.13 3.06 6.17 -52.48 -0.32 2.74 16 31 H 0.41 5.85 5.92 -40.82 -0.24 5.60 16 32 H 0.39 3.83 8.84 -40.82 -0.36 3.47 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -25.97 301.96 -7.38 -33.35 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -2.55 Total: 11.41 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -6.05 Total: -22.99 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 1.66 Total: -34.96 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.97 -7.38 -33.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244090302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.429 kcal (2) G-P(sol) polarization free energy of solvation -25.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds