Wall clock time and date at job start Tue Mar 31 2020 05:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39810 * 119.99574 * 55.96355 * 3 2 1 5 5 C 1.37655 * 120.13097 * 179.72005 * 4 3 2 6 6 C 1.39441 * 120.10714 * 0.51080 * 5 4 3 7 7 C 1.48194 * 120.00252 * 179.76911 * 6 5 4 8 8 C 1.39916 * 119.97553 * 129.97572 * 7 6 5 9 9 C 1.38207 * 120.41088 * 180.29628 * 8 7 6 10 10 C 1.38084 * 120.35457 * 359.44679 * 9 8 7 11 11 F 1.35104 * 120.02865 * 180.29664 * 10 9 8 12 12 C 1.41053 * 119.94401 * 0.27445 * 10 9 8 13 13 C 1.41316 * 120.20556 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00370 * 334.65567 * 13 12 10 15 15 C 1.39917 * 120.00178 * 154.65463 * 13 12 10 16 16 N 1.30856 * 119.99568 * 342.93113 * 15 13 12 17 17 Si 1.86792 * 120.00208 * 162.93003 * 15 13 12 18 18 H 1.48501 * 109.47100 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47702 * 120.00230 * 17 15 13 20 20 H 1.48507 * 109.47228 * 240.00414 * 17 15 13 21 21 C 1.38780 * 119.97561 * 309.71682 * 7 6 5 22 22 C 1.40102 * 119.98457 * 359.48711 * 6 5 4 23 23 N 1.39540 * 120.06258 * 180.27528 * 22 6 5 24 24 C 1.38438 * 119.87748 * 0.25731 * 22 6 5 25 25 H 1.08000 * 119.93772 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.94434 * 180.27946 * 5 4 3 27 27 H 1.08005 * 119.79722 * 0.02562 * 8 7 6 28 28 H 1.07999 * 119.81970 * 179.72305 * 9 8 7 29 29 H 0.97007 * 120.00094 * 180.02562 * 16 15 13 30 30 H 1.08003 * 120.17339 * 0.02562 * 21 7 6 31 31 H 0.97000 * 119.99238 * 0.02562 * 23 22 6 32 32 H 0.96995 * 120.00282 * 180.02562 * 23 22 6 33 33 H 1.07993 * 120.05686 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -0.6768 -1.0034 5 6 4.6437 -0.6732 -1.0094 6 6 5.3458 -0.0026 -0.0084 7 6 6.8277 -0.0045 -0.0142 8 6 7.5288 1.1995 0.1138 9 6 8.9108 1.2088 0.1034 10 6 9.6157 0.0281 -0.0221 11 9 10.9666 0.0442 -0.0254 12 6 8.9241 -1.1950 -0.1463 13 6 9.6399 -2.4067 -0.2745 14 1 10.6408 -2.4023 -0.6802 15 6 9.0520 -3.6121 0.1242 16 7 8.0045 -3.6012 0.9084 17 14 9.7624 -5.2369 -0.4628 18 1 10.9378 -4.9777 -1.3327 19 1 10.1834 -6.0455 0.7093 20 1 8.7311 -5.9791 -1.2316 21 6 7.5191 -1.2012 -0.1412 22 6 4.6498 0.6778 0.9993 23 7 5.3507 1.3542 1.9985 24 6 3.2655 0.6782 1.0017 25 1 2.7264 -1.2005 -1.7777 26 1 5.1808 -1.1937 -1.7884 27 1 6.9867 2.1279 0.2170 28 1 9.4423 2.1442 0.1984 29 1 7.5971 -4.4369 1.1852 30 1 6.9799 -2.1321 -0.2364 31 1 6.3207 1.3538 1.9955 32 1 4.8680 1.8246 2.6960 33 1 2.7261 1.2014 1.7774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244090302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:33 Heat of formation + Delta-G solvation = 3.896460 kcal Electronic energy + Delta-G solvation = -20375.382055 eV Core-core repulsion = 17085.899329 eV Total energy + Delta-G solvation = -3289.482726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.16066 -40.79060 -38.92298 -37.54986 -35.76021 -35.21294 -33.13723 -31.65366 -30.20928 -29.16038 -27.29365 -24.91155 -23.50159 -22.75427 -21.84560 -19.78445 -19.25834 -18.10460 -17.60284 -17.25894 -16.77905 -16.39844 -16.16480 -15.89727 -15.36554 -15.03827 -14.95148 -14.63667 -14.42863 -14.32271 -13.89289 -13.78538 -13.61955 -13.46476 -13.33183 -12.85246 -12.77202 -12.40539 -12.26125 -12.01695 -11.66685 -11.49237 -11.34567 -11.10677 -9.94438 -9.48363 -9.08181 -8.68776 -8.22154 -6.40425 -0.23232 0.70656 0.82044 0.94120 1.39929 1.47455 1.53813 1.64211 2.05432 2.20580 2.63412 2.82853 3.05696 3.25030 3.53455 3.94832 4.05276 4.08971 4.31529 4.39393 4.56612 4.68337 4.80596 5.03133 5.03376 5.11639 5.19714 5.28014 5.44165 5.58492 5.64253 5.75020 5.86392 6.03125 6.05861 6.20513 6.46860 6.56488 6.65068 6.79846 6.88854 7.10472 8.26400 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.005210 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.751313 B = 5373.023090 C = 6600.827778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.288 3.712 3 C 0.002 3.998 4 C -0.120 4.120 5 C -0.072 4.072 6 C -0.088 4.088 7 C -0.038 4.038 8 C -0.198 4.198 9 C -0.116 4.116 10 C -0.063 4.063 11 F -0.173 7.173 12 C 0.058 3.942 13 C -0.494 4.494 14 H 0.067 0.933 15 C 0.044 3.956 16 N -0.811 5.811 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.266 1.266 20 H -0.257 1.257 21 C -0.139 4.139 22 C 0.224 3.776 23 N -0.866 5.866 24 C -0.146 4.146 25 H 0.146 0.854 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.292 0.708 30 H 0.117 0.883 31 H 0.404 0.596 32 H 0.408 0.592 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 5.108 0.303 8.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.026 4.026 3 C -0.002 4.002 4 C -0.143 4.143 5 C -0.091 4.091 6 C -0.093 4.093 7 C -0.038 4.038 8 C -0.218 4.218 9 C -0.134 4.134 10 C -0.083 4.083 11 F -0.153 7.153 12 C 0.055 3.945 13 C -0.523 4.523 14 H 0.086 0.914 15 C -0.172 4.172 16 N -0.436 5.436 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.190 1.190 20 H -0.181 1.181 21 C -0.158 4.158 22 C 0.117 3.883 23 N -0.407 5.407 24 C -0.171 4.171 25 H 0.164 0.836 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.236 0.764 32 H 0.239 0.761 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.095 4.958 0.446 9.504 hybrid contribution 1.590 -0.674 0.127 1.732 sum -6.505 4.284 0.573 7.810 Atomic orbital electron populations 1.81233 1.13051 1.10250 1.09594 1.25778 0.92554 0.92155 0.92145 1.15687 0.83120 1.02848 0.98514 1.20902 0.93255 1.01127 0.99013 1.20999 0.93641 0.96983 0.97435 1.18728 0.91784 1.01852 0.96975 1.18615 0.91308 0.93199 1.00727 1.20558 0.92081 0.96846 1.12279 1.20744 0.95094 0.95534 1.02068 1.18336 0.75885 0.96053 1.18026 1.91237 1.31076 1.97505 1.95446 1.17899 0.93455 0.91659 0.91451 1.19679 1.01930 0.92123 1.38547 0.91445 1.26581 0.94483 1.04081 0.92067 1.69826 1.19068 1.31210 1.23499 0.85228 0.79413 0.76403 0.79200 1.18813 1.19044 1.18141 1.21234 0.92379 0.96936 1.05289 1.17511 0.90666 0.91407 0.88692 1.42729 1.09955 1.58627 1.29340 1.20518 0.91232 1.04565 1.00800 0.83585 0.85268 0.84773 0.85221 0.89696 0.86521 0.76392 0.76128 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.27 18.54 19.00 0.35 -12.92 16 2 C 0.29 7.14 15.32 88.33 1.35 8.49 16 3 C 0.00 0.06 5.73 -21.32 -0.12 -0.07 16 4 C -0.12 -2.88 9.73 22.51 0.22 -2.66 16 5 C -0.07 -2.07 9.47 22.42 0.21 -1.86 16 6 C -0.09 -2.81 5.49 -19.89 -0.11 -2.92 16 7 C -0.04 -1.47 5.07 -20.10 -0.10 -1.57 16 8 C -0.20 -7.09 7.69 22.67 0.17 -6.91 16 9 C -0.12 -4.58 9.99 22.23 0.22 -4.36 16 10 C -0.06 -3.03 7.31 22.92 0.17 -2.87 16 11 F -0.17 -8.59 16.71 44.97 0.75 -7.84 16 12 C 0.06 2.99 5.57 -21.28 -0.12 2.87 16 13 C -0.49 -26.08 8.77 23.43 0.21 -25.87 16 14 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 15 C 0.04 2.14 5.15 85.24 0.44 2.58 16 16 N -0.81 -39.47 10.97 21.82 0.24 -39.23 16 17 Si 0.98 36.82 29.59 68.60 2.03 38.85 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 21 C -0.14 -6.46 8.12 22.95 0.19 -6.28 16 22 C 0.22 5.92 6.66 38.41 0.26 6.18 16 23 N -0.87 -19.68 8.60 -51.00 -0.44 -20.12 16 24 C -0.15 -3.25 9.58 22.65 0.22 -3.03 16 25 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 26 H 0.13 3.75 8.03 -2.91 -0.02 3.73 16 27 H 0.13 3.95 7.43 -2.91 -0.02 3.93 16 28 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.29 12.79 8.30 -92.70 -0.77 12.02 16 30 H 0.12 5.69 6.17 -2.91 -0.02 5.68 16 31 H 0.40 10.47 5.92 -92.71 -0.55 9.92 16 32 H 0.41 6.52 8.84 -92.71 -0.82 5.70 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -57.93 301.96 5.96 -51.97 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.17 Total: 27.57 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.20 Total: -38.28 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: 0.15 Total: -72.27 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 0.75 Total: -7.84 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -57.93 5.96 -51.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244090302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.869 kcal (2) G-P(sol) polarization free energy of solvation -57.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds