Wall clock time and date at job start Tue Mar 31 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39817 * 119.99350 * 104.74515 * 3 2 1 5 5 C 1.37646 * 120.12750 * 180.27718 * 4 3 2 6 6 C 1.39450 * 120.11080 * 359.48878 * 5 4 3 7 7 C 1.48176 * 120.00432 * 180.25832 * 6 5 4 8 8 C 1.38783 * 120.02824 * 65.25441 * 7 6 5 9 9 C 1.40517 * 119.64786 * 180.02562 * 8 7 6 10 10 C 1.41346 * 120.15142 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99726 * 330.16543 * 10 9 8 12 12 C 1.39888 * 119.99899 * 150.16346 * 10 9 8 13 13 N 1.30865 * 119.99883 * 161.73041 * 12 10 9 14 14 Si 1.86801 * 120.00281 * 341.73031 * 12 10 9 15 15 H 1.48502 * 109.47200 * 95.41547 * 14 12 10 16 16 H 1.48500 * 109.47229 * 215.41445 * 14 12 10 17 17 H 1.48501 * 109.47187 * 335.41776 * 14 12 10 18 18 C 1.40867 * 119.69922 * 359.97438 * 9 8 7 19 19 C 1.37575 * 120.04476 * 359.97438 * 18 9 8 20 20 C 1.38738 * 120.35667 * 359.76317 * 19 18 9 21 21 F 1.35098 * 119.85032 * 180.27728 * 20 19 18 22 22 C 1.40107 * 119.98443 * 0.50926 * 6 5 4 23 23 N 1.39529 * 120.06648 * 179.72392 * 22 6 5 24 24 C 1.38432 * 119.87263 * 359.74715 * 22 6 5 25 25 H 1.08000 * 119.93264 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.94193 * 179.72640 * 5 4 3 27 27 H 1.07990 * 120.17380 * 359.97438 * 8 7 6 28 28 H 0.97007 * 120.00187 * 179.97438 * 13 12 10 29 29 H 1.08001 * 119.98268 * 180.02562 * 18 9 8 30 30 H 1.07994 * 119.82217 * 180.02562 * 19 18 9 31 31 H 0.97001 * 120.00356 * 180.02562 * 23 22 6 32 32 H 0.97005 * 119.99813 * 0.02901 * 23 22 6 33 33 H 1.08004 * 120.05779 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 0.3092 -1.1711 5 6 4.6433 0.3050 -1.1756 6 6 5.3459 0.0035 -0.0094 7 6 6.8276 0.0053 -0.0156 8 6 7.5198 1.1886 -0.2321 9 6 8.9249 1.1810 -0.2368 10 6 9.6406 2.3799 -0.4569 11 1 9.2123 3.1598 -1.0690 12 6 10.9035 2.5562 0.1183 13 7 11.7136 3.4713 -0.3495 14 14 11.4337 1.4853 1.5542 15 1 12.2255 0.3354 1.0483 16 1 12.2651 2.2861 2.4884 17 1 10.2318 0.9831 2.2674 18 6 9.6171 -0.0268 -0.0213 19 6 8.9184 -1.1923 0.1932 20 6 7.5310 -1.1863 0.2037 21 9 6.8552 -2.3357 0.4208 22 6 4.6504 -0.3064 1.1667 23 7 5.3516 -0.6140 2.3331 24 6 3.2661 -0.3072 1.1693 25 1 2.7255 0.5464 -2.0750 26 1 5.1800 0.5395 -2.0830 27 1 6.9813 2.1100 -0.3969 28 1 12.5892 3.5938 0.0495 29 1 10.6970 -0.0377 -0.0236 30 1 9.4527 -2.1161 0.3584 31 1 4.8692 -0.8287 3.1468 32 1 6.3217 -0.6130 2.3303 33 1 2.7269 -0.5452 2.0743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244091226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:17 Heat of formation + Delta-G solvation = 17.916882 kcal Electronic energy + Delta-G solvation = -20472.742552 eV Core-core repulsion = 17183.867797 eV Total energy + Delta-G solvation = -3288.874755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.76240 -39.60267 -37.68383 -36.49978 -34.34296 -33.78957 -32.16998 -30.26653 -29.38024 -28.24957 -25.14806 -24.00766 -22.20429 -21.33049 -20.69130 -18.80709 -17.72487 -16.87140 -16.75287 -15.69648 -15.44735 -15.18620 -14.94028 -14.40507 -14.31996 -13.96930 -13.64901 -13.56537 -13.20417 -12.92439 -12.76944 -12.67979 -12.56969 -12.09510 -11.89360 -11.83432 -11.26783 -10.96822 -10.82907 -10.49505 -10.42074 -10.25076 -9.78491 -9.33722 -8.78865 -8.05144 -7.71090 -7.29822 -7.15065 -4.67987 0.85233 1.68743 2.17442 2.27211 2.67111 2.95158 3.06793 3.08003 3.14878 3.79440 3.82992 4.02811 4.17656 4.18420 4.93744 5.06311 5.10249 5.26708 5.39320 5.55229 5.74433 5.74539 5.96466 6.12709 6.28394 6.40091 6.40977 6.52076 6.62630 6.79604 6.90306 7.08191 7.19890 7.31709 7.48752 7.57592 7.60909 7.81948 7.93509 8.12246 8.36926 8.55721 9.86414 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026598 B = 0.004563 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.466896 B = 6135.064764 C = 6551.367058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.267 3.733 3 C 0.003 3.997 4 C -0.129 4.129 5 C -0.061 4.061 6 C -0.070 4.070 7 C -0.049 4.049 8 C -0.165 4.165 9 C 0.084 3.916 10 C -0.438 4.438 11 H 0.095 0.905 12 C 0.083 3.917 13 N -0.798 5.798 14 Si 0.911 3.089 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.244 1.244 18 C -0.215 4.215 19 C -0.102 4.102 20 C -0.038 4.038 21 F -0.162 7.162 22 C 0.234 3.766 23 N -0.865 5.865 24 C -0.157 4.157 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.114 0.886 28 H 0.288 0.712 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.395 0.605 32 H 0.407 0.593 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 -5.366 3.259 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.048 4.048 3 C -0.001 4.001 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.075 4.075 7 C -0.050 4.050 8 C -0.184 4.184 9 C 0.081 3.919 10 C -0.465 4.465 11 H 0.113 0.887 12 C -0.138 4.138 13 N -0.421 5.421 14 Si 0.737 3.263 15 H -0.194 1.194 16 H -0.215 1.215 17 H -0.167 1.167 18 C -0.234 4.234 19 C -0.121 4.121 20 C -0.058 4.058 21 F -0.142 7.142 22 C 0.127 3.873 23 N -0.403 5.403 24 C -0.183 4.183 25 H 0.145 0.855 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.223 0.777 32 H 0.237 0.763 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.105 -5.199 3.224 10.154 hybrid contribution 1.058 -0.634 0.906 1.531 sum -7.046 -5.833 4.130 10.036 Atomic orbital electron populations 1.81206 1.12230 1.09554 1.08147 1.25847 0.92771 0.93122 0.93081 1.15673 0.83576 1.05533 0.95298 1.20758 0.93977 1.03861 0.96607 1.20947 0.92866 0.96768 0.97367 1.18598 0.92724 1.03824 0.92388 1.18267 0.89894 0.93032 1.03812 1.21022 0.93522 0.95296 1.08589 1.17681 0.91637 0.92779 0.89813 1.19509 0.99216 1.01343 1.26455 0.88708 1.26202 0.95000 0.94823 0.97744 1.69701 1.07482 1.28919 1.35992 0.86316 0.79986 0.79214 0.80828 1.19436 1.21538 1.16668 1.20966 0.98575 0.92196 1.11671 1.20538 0.91896 0.98346 1.01296 1.17196 0.89300 0.81138 1.18188 1.91332 1.80650 1.48324 1.93859 1.17492 0.90150 0.92513 0.87097 1.42502 1.09854 1.78423 1.09551 1.20313 0.91835 1.08446 0.97721 0.85511 0.84751 0.86827 0.90124 0.87329 0.87426 0.77691 0.76270 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.48 18.54 41.84 0.78 -5.71 16 2 C 0.27 3.52 15.32 -22.47 -0.34 3.17 16 3 C 0.00 0.04 5.73 -106.86 -0.61 -0.57 16 4 C -0.13 -1.58 9.73 -39.21 -0.38 -1.96 16 5 C -0.06 -0.84 9.70 -39.35 -0.38 -1.23 16 6 C -0.07 -1.11 5.02 -104.66 -0.53 -1.63 16 7 C -0.05 -0.90 4.52 -104.92 -0.47 -1.38 16 8 C -0.16 -3.32 9.47 -38.52 -0.36 -3.69 16 9 C 0.08 1.88 5.10 -106.86 -0.55 1.33 16 10 C -0.44 -10.61 9.56 -37.78 -0.36 -10.97 16 11 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 12 C 0.08 1.97 5.40 -17.35 -0.09 1.88 16 13 N -0.80 -19.59 13.93 55.54 0.77 -18.81 16 14 Si 0.91 18.74 24.51 -169.99 -4.17 14.58 16 15 H -0.27 -5.36 6.70 56.52 0.38 -4.98 16 16 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.24 -5.05 6.86 56.52 0.39 -4.66 16 18 C -0.21 -4.58 7.16 -38.83 -0.28 -4.86 16 19 C -0.10 -1.99 9.99 -39.64 -0.40 -2.39 16 20 C -0.04 -0.73 6.10 -38.70 -0.24 -0.97 16 21 F -0.16 -3.04 16.41 2.25 0.04 -3.01 16 22 C 0.23 3.32 6.53 -83.58 -0.55 2.77 16 23 N -0.87 -11.08 8.76 32.53 0.28 -10.79 16 24 C -0.16 -1.95 9.58 -39.00 -0.37 -2.32 16 25 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 26 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 29 H 0.11 2.31 4.72 -52.49 -0.25 2.07 16 30 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.40 3.81 8.84 -40.82 -0.36 3.45 16 32 H 0.41 5.85 6.78 -40.82 -0.28 5.57 16 33 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -25.41 298.71 -6.30 -31.71 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -2.59 Total: 10.35 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -5.91 Total: -22.82 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 1.83 Total: -35.31 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.17 Total: 14.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -25.41 -6.30 -31.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244091226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.623 kcal (2) G-P(sol) polarization free energy of solvation -25.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds