Wall clock time and date at job start Tue Mar 31 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13588 * 1 3 3 C 1.43212 * 179.97438 * 2 1 4 4 C 1.39806 * 119.98970 * 116.78731 * 3 2 1 5 5 C 1.37656 * 120.12717 * 179.97438 * 4 3 2 6 6 C 1.39431 * 120.11155 * 0.02562 * 5 4 3 7 7 C 1.48218 * 120.00838 * 180.02562 * 6 5 4 8 8 C 1.39787 * 119.99813 * 130.02135 * 7 6 5 9 9 C 1.38600 * 120.34081 * 179.97438 * 8 7 6 10 10 F 1.35096 * 119.83005 * 180.27104 * 9 8 7 11 11 C 1.37956 * 120.33955 * 359.97438 * 9 8 7 12 12 C 1.40730 * 119.98456 * 0.02562 * 11 9 8 13 13 C 1.41429 * 120.16707 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99701 * 204.52370 * 13 12 11 15 15 C 1.39919 * 120.00371 * 24.53311 * 13 12 11 16 16 N 1.30838 * 119.99836 * 17.89537 * 15 13 12 17 17 Si 1.86803 * 120.00335 * 197.90481 * 15 13 12 18 18 H 1.48498 * 109.46832 * 59.99270 * 17 15 13 19 19 H 1.48492 * 109.47106 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46901 * 299.99723 * 17 15 13 21 21 C 1.38848 * 119.99514 * 310.00035 * 7 6 5 22 22 C 1.40090 * 119.98586 * 0.27179 * 6 5 4 23 23 N 1.39515 * 120.06490 * 179.70170 * 22 6 5 24 24 C 1.38454 * 119.87318 * 359.47231 * 22 6 5 25 25 H 1.08000 * 119.93840 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.94653 * 179.97438 * 5 4 3 27 27 H 1.07994 * 119.83246 * 359.97438 * 8 7 6 28 28 H 1.07995 * 120.00690 * 179.97438 * 11 9 8 29 29 H 0.97003 * 119.99604 * 180.02562 * 16 15 13 30 30 H 1.08001 * 120.16373 * 0.02562 * 21 7 6 31 31 H 0.96999 * 120.00054 * 0.02562 * 23 22 6 32 32 H 0.97006 * 120.00359 * 179.97438 * 23 22 6 33 33 H 1.08001 * 120.05910 * 180.25332 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 0.5467 -1.0809 5 6 4.6431 0.5493 -1.0836 6 6 5.3458 0.0067 -0.0084 7 6 6.8279 0.0112 -0.0135 8 6 7.5292 0.4896 1.0971 9 6 8.9151 0.4966 1.1003 10 9 9.5824 0.9561 2.1813 11 6 9.6168 0.0310 0.0075 12 6 8.9250 -0.4538 -1.1181 13 6 9.6405 -0.9315 -2.2406 14 1 9.1781 -0.9289 -3.2167 15 6 10.9471 -1.4076 -2.0867 16 7 11.3861 -1.7418 -0.9004 17 14 12.0650 -1.5657 -3.5750 18 1 12.2406 -0.2330 -4.2059 19 1 13.3874 -2.0887 -3.1474 20 1 11.4556 -2.5007 -4.5546 21 6 7.5197 -0.4601 -1.1212 22 6 4.6506 -0.5472 1.0743 23 7 5.3520 -1.0961 2.1482 24 6 3.2660 -0.5447 1.0788 25 1 2.7252 0.9673 -1.9155 26 1 5.1798 0.9714 -1.9204 27 1 6.9882 0.8556 1.9572 28 1 10.6967 0.0393 0.0156 29 1 12.2921 -2.0715 -0.7937 30 1 6.9805 -0.8302 -1.9807 31 1 6.3220 -1.0941 2.1457 32 1 4.8697 -1.4792 2.8976 33 1 2.7270 -0.9673 1.9139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244093344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:42 Heat of formation + Delta-G solvation = 14.569287 kcal Electronic energy + Delta-G solvation = -20142.113427 eV Core-core repulsion = 16853.093509 eV Total energy + Delta-G solvation = -3289.019918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.77933 -39.64817 -37.45555 -36.40899 -34.40805 -33.87097 -31.72134 -29.83724 -29.00939 -27.99395 -25.63707 -23.86577 -22.20336 -20.86566 -20.68315 -18.74517 -17.74434 -16.78141 -16.10297 -15.41332 -15.14140 -14.93783 -14.89722 -14.43035 -14.41607 -14.17845 -13.95348 -13.59915 -13.09750 -12.90357 -12.66587 -12.62893 -12.12054 -11.76199 -11.71850 -11.37016 -11.15481 -11.01280 -10.87030 -10.56614 -10.45818 -10.14272 -9.82081 -9.35737 -8.75561 -7.78519 -7.60655 -7.12472 -6.95617 -4.64256 0.86975 1.71930 2.47503 2.54524 2.69804 2.96220 2.97341 3.01922 3.19557 3.77035 3.87827 4.08297 4.23320 4.35777 4.99857 5.11679 5.24057 5.37219 5.56412 5.66283 5.85033 6.00933 6.14590 6.23238 6.43487 6.48242 6.59689 6.72673 6.82937 6.92460 7.00526 7.29137 7.49213 7.51612 7.56522 7.67577 7.72739 7.99416 8.02533 8.34140 8.60948 8.62718 9.94517 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.004255 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.514728 B = 6578.498756 C = 7462.223812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.267 3.733 3 C -0.002 4.002 4 C -0.128 4.128 5 C -0.066 4.066 6 C -0.063 4.063 7 C -0.008 4.008 8 C -0.276 4.276 9 C 0.109 3.891 10 F -0.166 7.166 11 C -0.198 4.198 12 C 0.129 3.871 13 C -0.453 4.453 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.783 5.783 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.207 4.207 22 C 0.227 3.773 23 N -0.870 5.870 24 C -0.158 4.158 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.286 0.714 30 H 0.104 0.896 31 H 0.411 0.589 32 H 0.393 0.607 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 1.095 1.490 6.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.048 4.048 3 C -0.006 4.006 4 C -0.151 4.151 5 C -0.085 4.085 6 C -0.068 4.068 7 C -0.008 4.008 8 C -0.296 4.296 9 C 0.090 3.910 10 F -0.145 7.145 11 C -0.218 4.218 12 C 0.126 3.874 13 C -0.482 4.482 14 H 0.103 0.897 15 C -0.145 4.145 16 N -0.407 5.407 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.227 4.227 22 C 0.120 3.880 23 N -0.411 5.411 24 C -0.184 4.184 25 H 0.144 0.856 26 H 0.153 0.847 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.245 0.755 32 H 0.220 0.780 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.348 0.997 1.646 7.596 hybrid contribution 1.347 -0.266 -0.026 1.374 sum -6.000 0.731 1.620 6.258 Atomic orbital electron populations 1.81199 1.12269 1.09464 1.08438 1.25867 0.92793 0.93054 0.93040 1.15659 0.83534 1.04354 0.97020 1.20764 0.94043 1.02589 0.97657 1.20974 0.92802 0.97278 0.97446 1.18777 0.93234 1.01031 0.93786 1.17928 0.89044 0.99391 0.94482 1.20233 0.91728 1.17096 1.00585 1.17554 0.89849 0.99517 0.84083 1.91348 1.81377 1.87333 1.54444 1.21372 1.00702 1.05595 0.94163 1.17291 0.90545 0.87687 0.91856 1.19612 0.97389 1.35647 0.95515 0.89706 1.25988 0.98576 0.92543 0.97347 1.69798 1.18053 1.28634 1.24200 0.86289 0.78750 0.79923 0.81450 1.18566 1.20191 1.18749 1.21135 0.93944 1.09668 0.97938 1.17515 0.90095 0.92090 0.88286 1.42814 1.10383 1.67180 1.20714 1.20323 0.91904 1.06740 0.99394 0.85627 0.84712 0.87766 0.85297 0.90329 0.87802 0.75524 0.77954 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.53 18.54 41.83 0.78 -5.76 16 2 C 0.27 3.53 15.32 -22.47 -0.34 3.19 16 3 C 0.00 -0.02 5.73 -106.87 -0.61 -0.63 16 4 C -0.13 -1.55 9.73 -39.21 -0.38 -1.94 16 5 C -0.07 -0.92 9.47 -39.35 -0.37 -1.29 16 6 C -0.06 -1.00 5.49 -104.66 -0.57 -1.58 16 7 C -0.01 -0.15 5.05 -104.99 -0.53 -0.68 16 8 C -0.28 -5.49 7.68 -38.87 -0.30 -5.79 16 9 C 0.11 2.43 7.28 -39.55 -0.29 2.14 16 10 F -0.17 -3.63 17.26 2.25 0.04 -3.59 16 11 C -0.20 -4.77 8.67 -38.74 -0.34 -5.11 16 12 C 0.13 3.08 5.57 -106.88 -0.60 2.48 16 13 C -0.45 -10.81 9.05 -37.74 -0.34 -11.15 16 14 H 0.08 1.91 7.91 -52.48 -0.42 1.50 16 15 C 0.08 1.73 5.13 -17.35 -0.09 1.64 16 16 N -0.78 -18.72 10.96 55.55 0.61 -18.11 16 17 Si 0.91 17.13 29.60 -169.99 -5.03 12.09 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 19 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 C -0.21 -4.39 9.23 -38.49 -0.36 -4.74 16 22 C 0.23 3.19 6.66 -83.59 -0.56 2.64 16 23 N -0.87 -11.16 8.62 32.52 0.28 -10.88 16 24 C -0.16 -1.95 9.58 -39.00 -0.37 -2.32 16 25 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.14 1.76 8.03 -52.49 -0.42 1.33 16 27 H 0.10 1.91 7.49 -52.49 -0.39 1.51 16 28 H 0.13 3.28 6.15 -52.49 -0.32 2.95 16 29 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 30 H 0.10 2.06 8.03 -52.49 -0.42 1.64 16 31 H 0.41 6.01 5.96 -40.82 -0.24 5.76 16 32 H 0.39 3.82 8.84 -40.82 -0.36 3.46 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -25.37 302.73 -7.37 -32.74 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -2.56 Total: 12.08 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -6.05 Total: -23.14 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 1.66 Total: -34.76 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.37 -7.37 -32.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244093344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.311 kcal (2) G-P(sol) polarization free energy of solvation -25.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds