Wall clock time and date at job start Tue Mar 31 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13588 * 1 3 3 C 1.43212 * 179.97438 * 2 1 4 4 C 1.39806 * 119.98970 * 116.78731 * 3 2 1 5 5 C 1.37656 * 120.12717 * 179.97438 * 4 3 2 6 6 C 1.39431 * 120.11155 * 0.02562 * 5 4 3 7 7 C 1.48218 * 120.00838 * 180.02562 * 6 5 4 8 8 C 1.39787 * 119.99813 * 130.02135 * 7 6 5 9 9 C 1.38600 * 120.34081 * 179.97438 * 8 7 6 10 10 F 1.35096 * 119.83005 * 180.27104 * 9 8 7 11 11 C 1.37956 * 120.33955 * 359.97438 * 9 8 7 12 12 C 1.40730 * 119.98456 * 0.02562 * 11 9 8 13 13 C 1.41429 * 120.16707 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99701 * 204.52370 * 13 12 11 15 15 C 1.39919 * 120.00371 * 24.53311 * 13 12 11 16 16 N 1.30838 * 119.99836 * 17.89537 * 15 13 12 17 17 Si 1.86803 * 120.00335 * 197.90481 * 15 13 12 18 18 H 1.48498 * 109.46832 * 59.99270 * 17 15 13 19 19 H 1.48492 * 109.47106 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46901 * 299.99723 * 17 15 13 21 21 C 1.38848 * 119.99514 * 310.00035 * 7 6 5 22 22 C 1.40090 * 119.98586 * 0.27179 * 6 5 4 23 23 N 1.39515 * 120.06490 * 179.70170 * 22 6 5 24 24 C 1.38454 * 119.87318 * 359.47231 * 22 6 5 25 25 H 1.08000 * 119.93840 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.94653 * 179.97438 * 5 4 3 27 27 H 1.07994 * 119.83246 * 359.97438 * 8 7 6 28 28 H 1.07995 * 120.00690 * 179.97438 * 11 9 8 29 29 H 0.97003 * 119.99604 * 180.02562 * 16 15 13 30 30 H 1.08001 * 120.16373 * 0.02562 * 21 7 6 31 31 H 0.96999 * 120.00054 * 0.02562 * 23 22 6 32 32 H 0.97006 * 120.00359 * 179.97438 * 23 22 6 33 33 H 1.08001 * 120.05910 * 180.25332 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 0.5467 -1.0809 5 6 4.6431 0.5493 -1.0836 6 6 5.3458 0.0067 -0.0084 7 6 6.8279 0.0112 -0.0135 8 6 7.5292 0.4896 1.0971 9 6 8.9151 0.4966 1.1003 10 9 9.5824 0.9561 2.1813 11 6 9.6168 0.0310 0.0075 12 6 8.9250 -0.4538 -1.1181 13 6 9.6405 -0.9315 -2.2406 14 1 9.1781 -0.9289 -3.2167 15 6 10.9471 -1.4076 -2.0867 16 7 11.3861 -1.7418 -0.9004 17 14 12.0650 -1.5657 -3.5750 18 1 12.2406 -0.2330 -4.2059 19 1 13.3874 -2.0887 -3.1474 20 1 11.4556 -2.5007 -4.5546 21 6 7.5197 -0.4601 -1.1212 22 6 4.6506 -0.5472 1.0743 23 7 5.3520 -1.0961 2.1482 24 6 3.2660 -0.5447 1.0788 25 1 2.7252 0.9673 -1.9155 26 1 5.1798 0.9714 -1.9204 27 1 6.9882 0.8556 1.9572 28 1 10.6967 0.0393 0.0156 29 1 12.2921 -2.0715 -0.7937 30 1 6.9805 -0.8302 -1.9807 31 1 6.3220 -1.0941 2.1457 32 1 4.8697 -1.4792 2.8976 33 1 2.7270 -0.9673 1.9139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244093344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:41 Heat of formation + Delta-G solvation = 3.138440 kcal Electronic energy + Delta-G solvation = -20142.609106 eV Core-core repulsion = 16853.093509 eV Total energy + Delta-G solvation = -3289.515597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.54342 -40.81080 -38.97703 -37.59141 -35.73470 -35.24556 -33.06522 -31.52854 -30.25283 -29.25644 -27.36367 -25.14693 -23.37330 -22.42655 -22.24197 -19.80922 -19.36385 -17.88377 -17.78600 -16.75219 -16.59064 -16.51548 -16.35275 -16.13746 -15.90569 -15.28754 -15.05010 -14.65768 -14.60993 -14.14216 -14.00453 -13.79925 -13.58884 -13.39066 -13.01271 -12.88494 -12.65880 -12.45639 -12.23126 -12.07025 -11.82645 -11.54975 -11.38821 -11.03382 -9.98888 -9.39946 -9.15004 -8.69583 -8.28458 -6.43414 -0.25101 0.69717 0.81208 0.92291 1.41731 1.51068 1.54386 1.64491 2.05342 2.20212 2.62508 2.81532 3.04854 3.21801 3.56249 3.68770 4.02436 4.10559 4.32935 4.52276 4.53286 4.66310 4.83198 4.95669 5.02653 5.07993 5.15192 5.27297 5.43625 5.58205 5.65211 5.75790 5.85460 5.90657 5.98929 6.28077 6.47142 6.58802 6.60197 6.86045 6.88094 7.04420 8.26697 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.004255 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.514728 B = 6578.498756 C = 7462.223812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.287 3.713 3 C 0.006 3.994 4 C -0.120 4.120 5 C -0.064 4.064 6 C -0.096 4.096 7 C 0.010 3.990 8 C -0.264 4.264 9 C 0.098 3.902 10 F -0.167 7.167 11 C -0.228 4.228 12 C 0.107 3.893 13 C -0.487 4.487 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.818 5.818 17 Si 0.981 3.019 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.255 1.255 21 C -0.216 4.216 22 C 0.224 3.776 23 N -0.868 5.868 24 C -0.147 4.147 25 H 0.151 0.849 26 H 0.140 0.860 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.290 0.710 30 H 0.114 0.886 31 H 0.403 0.597 32 H 0.408 0.592 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 1.132 1.190 7.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.027 4.027 3 C 0.002 3.998 4 C -0.142 4.142 5 C -0.082 4.082 6 C -0.101 4.101 7 C 0.009 3.991 8 C -0.284 4.284 9 C 0.079 3.921 10 F -0.146 7.146 11 C -0.248 4.248 12 C 0.104 3.896 13 C -0.515 4.515 14 H 0.107 0.893 15 C -0.180 4.180 16 N -0.443 5.443 17 Si 0.802 3.198 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.179 1.179 21 C -0.235 4.235 22 C 0.117 3.883 23 N -0.408 5.408 24 C -0.173 4.173 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.234 0.766 32 H 0.238 0.762 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.318 1.031 1.370 9.474 hybrid contribution 1.761 -0.245 0.166 1.786 sum -7.556 0.786 1.536 7.751 Atomic orbital electron populations 1.81241 1.13121 1.10357 1.09346 1.25789 0.92570 0.92193 0.92170 1.15715 0.83095 1.03837 0.97123 1.20948 0.93298 1.01768 0.98195 1.21044 0.93530 0.96799 0.96859 1.18694 0.91270 1.04246 0.95925 1.18148 0.91121 0.96787 0.93001 1.20449 0.90611 1.15851 1.01486 1.17751 0.90868 0.99736 0.83710 1.91334 1.81625 1.87330 1.54298 1.21260 0.99837 1.08110 0.95629 1.17592 0.91937 0.88090 0.91967 1.19907 0.98672 1.37089 0.95849 0.89256 1.26809 0.99551 0.91681 0.99988 1.69868 1.18624 1.29669 1.26170 0.85247 0.76796 0.79880 0.77879 1.18385 1.19665 1.17941 1.21305 0.93097 1.09915 0.99215 1.17565 0.90742 0.92047 0.87936 1.42792 1.09960 1.67022 1.21074 1.20513 0.91122 1.05700 0.99925 0.83170 0.84246 0.85783 0.87589 0.89925 0.86811 0.76570 0.76164 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.62 18.54 19.01 0.35 -12.27 16 2 C 0.29 6.64 15.32 88.34 1.35 7.99 16 3 C 0.01 0.14 5.73 -21.32 -0.12 0.01 16 4 C -0.12 -2.49 9.73 22.51 0.22 -2.27 16 5 C -0.06 -1.60 9.47 22.42 0.21 -1.39 16 6 C -0.10 -2.85 5.49 -19.89 -0.11 -2.96 16 7 C 0.01 0.37 5.05 -20.10 -0.10 0.27 16 8 C -0.26 -10.34 7.68 22.73 0.17 -10.17 16 9 C 0.10 4.48 7.28 22.29 0.16 4.64 16 10 F -0.17 -7.41 17.26 44.97 0.78 -6.64 16 11 C -0.23 -11.48 8.67 22.81 0.20 -11.28 16 12 C 0.11 5.26 5.57 -21.33 -0.12 5.14 16 13 C -0.49 -23.94 9.05 23.46 0.21 -23.73 16 14 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.70 5.13 85.25 0.44 2.14 16 16 N -0.82 -40.71 10.96 21.82 0.24 -40.47 16 17 Si 0.98 35.56 29.60 68.60 2.03 37.59 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 19 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 20 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 21 C -0.22 -9.20 9.23 22.98 0.21 -8.98 16 22 C 0.22 5.70 6.66 38.42 0.26 5.95 16 23 N -0.87 -20.27 8.62 -51.02 -0.44 -20.71 16 24 C -0.15 -3.09 9.58 22.65 0.22 -2.87 16 25 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 26 H 0.14 3.34 8.03 -2.91 -0.02 3.32 16 27 H 0.12 4.33 7.49 -2.91 -0.02 4.31 16 28 H 0.11 5.74 6.15 -2.91 -0.02 5.72 16 29 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 30 H 0.11 4.51 8.03 -2.91 -0.02 4.48 16 31 H 0.40 11.15 5.96 -92.71 -0.55 10.60 16 32 H 0.41 6.83 8.84 -92.70 -0.82 6.01 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -55.78 302.73 5.98 -49.80 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.18 Total: 30.20 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.20 Total: -37.51 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: 0.15 Total: -73.45 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.78 Total: -6.64 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Total: -55.78 5.98 -49.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244093344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.937 kcal (2) G-P(sol) polarization free energy of solvation -55.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds