Wall clock time and date at job start Tue Mar 31 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39940 * 119.95431 * 167.68780 * 3 2 1 5 5 C 1.36486 * 120.30180 * 180.02562 * 4 3 2 6 6 C 1.39795 * 120.21550 * 0.02570 * 5 4 3 7 7 C 1.47555 * 120.04429 * 179.97438 * 6 5 4 8 8 C 1.39251 * 120.28102 * 65.02399 * 7 6 5 9 9 C 1.38032 * 120.16340 * 180.02562 * 8 7 6 10 10 C 1.38887 * 120.73907 * 359.97438 * 9 8 7 11 11 C 1.37680 * 120.55965 * 0.02562 * 10 9 8 12 12 F 1.35097 * 120.09246 * 180.02562 * 11 10 9 13 13 C 1.41062 * 119.81073 * 359.72032 * 11 10 9 14 14 C 1.40677 * 120.36055 * 180.27489 * 13 11 10 15 15 H 1.08000 * 119.99684 * 143.73794 * 14 13 11 16 16 C 1.40103 * 120.00325 * 323.74125 * 14 13 11 17 17 N 1.30781 * 119.99741 * 339.64233 * 16 14 13 18 18 Si 1.86792 * 120.00219 * 159.63729 * 16 14 13 19 19 H 1.48504 * 109.47439 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47273 * 120.00294 * 18 16 14 21 21 H 1.48506 * 109.47466 * 240.00110 * 18 16 14 22 22 C 1.40502 * 119.90915 * 359.97438 * 6 5 4 23 23 N 1.39319 * 120.15221 * 180.02562 * 22 6 5 24 24 C 1.38463 * 119.70177 * 0.27741 * 22 6 5 25 25 H 1.08001 * 119.85230 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.89684 * 179.97438 * 5 4 3 27 27 H 1.07998 * 119.91906 * 0.02562 * 8 7 6 28 28 H 1.08000 * 119.62783 * 180.02562 * 9 8 7 29 29 H 1.08004 * 119.71707 * 179.97438 * 10 9 8 30 30 H 0.96994 * 119.99969 * 179.97438 * 17 16 14 31 31 H 0.97007 * 119.99535 * 359.97438 * 23 22 6 32 32 H 0.96998 * 120.00326 * 180.02562 * 23 22 6 33 33 H 1.08001 * 120.10337 * 179.69860 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 1.1855 -0.2585 5 6 4.6310 1.1941 -0.2608 6 6 5.3424 0.0182 -0.0052 7 6 6.8178 0.0316 -0.0092 8 6 7.5159 0.7661 0.9460 9 6 8.8962 0.7774 0.9397 10 6 9.6076 0.0603 -0.0134 11 6 8.9481 -0.6761 -0.9717 12 9 9.6496 -1.3707 -1.8940 13 6 7.5379 -0.7086 -0.9837 14 6 6.8522 -1.4618 -1.9540 15 1 5.9378 -1.9739 -1.6932 16 6 7.3555 -1.5478 -3.2587 17 7 8.2007 -0.6497 -3.6939 18 14 6.8195 -2.9451 -4.3764 19 1 5.8642 -3.8207 -3.6511 20 1 6.1600 -2.3875 -5.5845 21 1 8.0078 -3.7378 -4.7826 22 6 4.6504 -1.1766 0.2555 23 7 5.3543 -2.3513 0.5114 24 6 3.2658 -1.1823 0.2517 25 1 2.7226 2.0972 -0.4580 26 1 5.1632 2.1122 -0.4616 27 1 6.9760 1.3283 1.6936 28 1 9.4288 1.3497 1.6848 29 1 10.6874 0.0811 -0.0032 30 1 8.5495 -0.7094 -4.5970 31 1 6.3243 -2.3457 0.5095 32 1 4.8744 -3.1750 0.6907 33 1 2.7274 -2.0980 0.4465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244093389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:35 Heat of formation + Delta-G solvation = 14.444155 kcal Electronic energy + Delta-G solvation = -21043.442493 eV Core-core repulsion = 17754.417149 eV Total energy + Delta-G solvation = -3289.025344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.88735 -40.69162 -38.76566 -37.42944 -35.57083 -35.12919 -33.13045 -31.41746 -30.26843 -29.19684 -27.07426 -24.95436 -23.15817 -22.56412 -21.82598 -19.69525 -19.24884 -17.90338 -17.67810 -17.04407 -16.35782 -16.24564 -15.96902 -15.77943 -15.59230 -15.17897 -14.96162 -14.55214 -14.51675 -14.07781 -13.87568 -13.67677 -13.42783 -13.21371 -13.03142 -12.96798 -12.59570 -12.37953 -12.29593 -11.99391 -11.80536 -11.34162 -11.14142 -10.86028 -9.75238 -9.19203 -8.98899 -8.64749 -8.15637 -6.28689 -0.05971 0.85172 0.87280 0.99291 1.39476 1.47474 1.50585 1.68668 2.12531 2.21994 2.77626 2.91855 3.16077 3.37403 3.51180 4.09882 4.16656 4.32291 4.42268 4.46743 4.68944 4.70305 4.90542 4.99170 5.12476 5.22646 5.31326 5.38258 5.55543 5.67438 5.78993 5.83911 5.96324 6.09803 6.10673 6.35445 6.52103 6.60029 6.78647 6.93035 7.01228 7.19900 8.36144 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.006988 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.197484 B = 4005.633045 C = 5163.365540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.290 3.710 3 C -0.010 4.010 4 C -0.121 4.121 5 C -0.078 4.078 6 C -0.050 4.050 7 C -0.146 4.146 8 C -0.084 4.084 9 C -0.205 4.205 10 C -0.141 4.141 11 C -0.003 4.003 12 F -0.161 7.161 13 C 0.081 3.919 14 C -0.478 4.478 15 H 0.101 0.899 16 C 0.041 3.959 17 N -0.812 5.812 18 Si 0.958 3.042 19 H -0.251 1.251 20 H -0.273 1.273 21 H -0.276 1.276 22 C 0.220 3.780 23 N -0.860 5.860 24 C -0.151 4.151 25 H 0.144 0.856 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.283 0.717 31 H 0.402 0.598 32 H 0.404 0.596 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 -0.359 6.419 7.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.024 4.024 3 C -0.014 4.014 4 C -0.143 4.143 5 C -0.097 4.097 6 C -0.055 4.055 7 C -0.147 4.147 8 C -0.102 4.102 9 C -0.224 4.224 10 C -0.161 4.161 11 C -0.023 4.023 12 F -0.140 7.140 13 C 0.078 3.922 14 C -0.507 4.507 15 H 0.119 0.881 16 C -0.176 4.176 17 N -0.436 5.436 18 Si 0.781 3.219 19 H -0.174 1.174 20 H -0.199 1.199 21 H -0.201 1.201 22 C 0.113 3.887 23 N -0.398 5.398 24 C -0.177 4.177 25 H 0.161 0.839 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.231 0.769 32 H 0.234 0.766 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.739 -0.307 6.178 7.792 hybrid contribution 1.137 -0.922 -1.118 1.841 sum -3.602 -1.229 5.060 6.332 Atomic orbital electron populations 1.81206 1.13045 1.09309 1.11197 1.25847 0.92627 0.91982 0.91953 1.15697 0.83013 0.95424 1.07289 1.20607 0.93639 0.97033 1.03026 1.20776 0.93454 0.97507 0.97968 1.18495 0.91842 0.92666 1.02544 1.18585 0.91255 1.03794 1.01103 1.21027 0.93821 0.97992 0.97377 1.20496 0.93998 1.05918 1.01961 1.20945 0.99372 0.99231 0.96511 1.18242 0.90695 1.02065 0.91304 1.91276 1.78847 1.77848 1.66067 1.17744 0.89510 0.91804 0.93148 1.19696 1.09763 1.27578 0.93647 0.88077 1.26540 0.93491 0.97158 1.00392 1.69812 1.24566 1.31040 1.18217 0.85493 0.78884 0.79312 0.78247 1.17386 1.19874 1.20140 1.17660 0.90465 0.87195 0.93366 1.42474 1.09600 1.08213 1.79562 1.20494 0.91466 0.97965 1.07725 0.83863 0.85072 0.85475 0.85121 0.86972 0.90620 0.76865 0.76588 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.66 18.54 19.00 0.35 -14.31 16 2 C 0.29 8.06 15.31 88.33 1.35 9.41 16 3 C -0.01 -0.27 5.74 -21.28 -0.12 -0.39 16 4 C -0.12 -3.17 9.68 22.27 0.22 -2.95 16 5 C -0.08 -2.38 9.66 22.24 0.21 -2.17 16 6 C -0.05 -1.72 4.72 -19.89 -0.09 -1.82 16 7 C -0.15 -5.76 4.56 -19.65 -0.09 -5.85 16 8 C -0.08 -3.00 9.71 22.46 0.22 -2.78 16 9 C -0.20 -7.40 10.02 22.38 0.22 -7.17 16 10 C -0.14 -5.89 9.99 22.29 0.22 -5.67 16 11 C 0.00 -0.13 6.68 22.83 0.15 0.02 16 12 F -0.16 -8.44 14.25 44.97 0.64 -7.80 16 13 C 0.08 3.76 4.54 -21.06 -0.10 3.66 16 14 C -0.48 -22.62 7.62 23.32 0.18 -22.44 16 15 H 0.10 4.51 5.47 -2.91 -0.02 4.50 16 16 C 0.04 2.00 4.50 85.30 0.38 2.38 16 17 N -0.81 -41.97 11.12 21.86 0.24 -41.72 16 18 Si 0.96 37.90 29.61 68.60 2.03 39.93 16 19 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.22 6.78 5.64 38.56 0.22 6.99 16 23 N -0.86 -24.44 7.71 -50.87 -0.39 -24.84 16 24 C -0.15 -4.03 9.59 22.66 0.22 -3.81 16 25 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 28 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.28 13.68 8.29 -92.71 -0.77 12.91 16 31 H 0.40 13.04 6.58 -92.70 -0.61 12.43 16 32 H 0.40 8.84 8.84 -92.71 -0.82 8.02 16 33 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -56.43 298.05 5.84 -50.60 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.23 Total: 30.72 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.20 Total: -32.58 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: 0.20 Total: -80.87 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.64 Total: -7.80 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -56.43 5.84 -50.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244093389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.043 kcal (2) G-P(sol) polarization free energy of solvation -56.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds