Wall clock time and date at job start Tue Mar 31 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39358 * 120.13749 * 9.99191 * 3 2 1 5 5 C 1.39312 * 119.76656 * 179.97438 * 4 3 2 6 6 C 1.47854 * 119.97366 * 179.97438 * 5 4 3 7 7 C 1.39994 * 119.90003 * 309.75781 * 6 5 4 8 8 C 1.36193 * 120.13674 * 179.71710 * 7 6 5 9 9 C 1.40999 * 119.92940 * 0.54903 * 8 7 6 10 10 C 1.40989 * 120.09865 * 179.74422 * 9 8 7 11 11 H 1.08000 * 119.99755 * 150.07179 * 10 9 8 12 12 C 1.39950 * 119.99915 * 330.06380 * 10 9 8 13 13 N 1.30834 * 119.99599 * 161.73826 * 12 10 9 14 14 Si 1.86802 * 120.00033 * 341.73915 * 12 10 9 15 15 H 1.48501 * 109.46906 * 95.41861 * 14 12 10 16 16 H 1.48507 * 109.46841 * 215.41248 * 14 12 10 17 17 H 1.48497 * 109.47210 * 335.41377 * 14 12 10 18 18 C 1.40891 * 119.79986 * 359.72310 * 9 8 7 19 19 C 1.36434 * 119.86310 * 359.97438 * 18 9 8 20 20 F 1.35096 * 119.96717 * 179.97438 * 19 18 9 21 21 C 1.39973 * 120.05175 * 0.02632 * 5 4 3 22 22 C 1.37618 * 120.27578 * 359.97438 * 21 5 4 23 23 C 1.39124 * 120.22924 * 359.97438 * 22 21 5 24 24 N 1.38740 * 120.02629 * 179.97438 * 23 22 21 25 25 H 1.07996 * 120.11952 * 359.95873 * 4 3 2 26 26 H 1.08000 * 119.93081 * 359.97438 * 7 6 5 27 27 H 1.08001 * 120.03805 * 180.25064 * 8 7 6 28 28 H 0.97006 * 119.99655 * 180.02562 * 13 12 10 29 29 H 1.07999 * 120.06458 * 180.02562 * 18 9 8 30 30 H 1.07997 * 119.86083 * 179.97438 * 21 5 4 31 31 H 1.08001 * 119.88233 * 179.72568 * 22 21 5 32 32 H 0.97008 * 120.00105 * 0.02562 * 24 23 22 33 33 H 0.96998 * 120.00289 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2683 -1.1860 -0.2091 5 6 4.6614 -1.1764 -0.2081 6 6 5.4089 -2.4328 -0.4289 7 6 5.0925 -3.5736 0.3183 8 6 5.7741 -4.7350 0.1147 9 6 6.8083 -4.7853 -0.8423 10 6 7.5198 -5.9843 -1.0521 11 1 7.9339 -6.2032 -2.0252 12 6 7.6896 -6.8906 0.0007 13 7 8.0188 -8.1315 -0.2511 14 14 7.4461 -6.3285 1.7654 15 1 6.0611 -6.6436 2.1986 16 1 8.4125 -7.0318 2.6468 17 1 7.6712 -4.8633 1.8538 18 6 7.1282 -3.6340 -1.5887 19 6 6.4359 -2.4765 -1.3824 20 9 6.7413 -1.3712 -2.0965 21 6 5.3540 0.0216 0.0029 22 6 4.6644 1.1945 0.2097 23 6 3.2732 1.1984 0.2099 24 7 2.5823 2.3832 0.4193 25 1 2.7329 -2.1098 -0.3711 26 1 4.3035 -3.5337 1.0546 27 1 5.5260 -5.6152 0.6892 28 1 8.1361 -8.7598 0.4786 29 1 7.9193 -3.6678 -2.3231 30 1 6.4339 0.0254 0.0035 31 1 5.2052 2.1144 0.3762 32 1 3.0693 3.2094 0.5652 33 1 1.6124 2.3856 0.4190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244114932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:45 Heat of formation + Delta-G solvation = 16.359219 kcal Electronic energy + Delta-G solvation = -20186.708015 eV Core-core repulsion = 16897.765715 eV Total energy + Delta-G solvation = -3288.942301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.98920 -39.58078 -37.78734 -36.28068 -34.92963 -33.64613 -31.21413 -31.08000 -29.58368 -28.30444 -25.02720 -23.77258 -22.20468 -21.53419 -20.72642 -18.44323 -17.90787 -17.08774 -16.94881 -15.88787 -15.30420 -15.17941 -14.81737 -14.66708 -14.21438 -14.06685 -13.86292 -13.24730 -13.14349 -13.01391 -12.91596 -12.60124 -12.50110 -12.24815 -11.91201 -11.34324 -11.19762 -11.16001 -11.00484 -10.50943 -10.35147 -10.03641 -9.77712 -9.37418 -8.84992 -8.08978 -7.79263 -7.20247 -7.17498 -4.71727 1.03486 1.52554 2.33895 2.46460 2.69960 2.97763 3.07913 3.13677 3.20075 3.66068 3.81138 4.02372 4.02915 4.29364 4.89985 5.14946 5.24783 5.32978 5.42940 5.56404 5.69144 5.86747 6.06895 6.19362 6.27124 6.34505 6.53851 6.54934 6.80190 6.85832 6.92618 7.20741 7.23022 7.35656 7.43358 7.46175 7.61144 7.64140 7.89251 8.10636 8.38848 8.53186 9.80098 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025006 B = 0.004358 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.463063 B = 6423.864938 C = 6887.725301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.269 3.731 3 C -0.119 4.119 4 C -0.027 4.027 5 C -0.048 4.048 6 C -0.230 4.230 7 C -0.031 4.031 8 C -0.248 4.248 9 C 0.114 3.886 10 C -0.428 4.428 11 H 0.096 0.904 12 C 0.083 3.917 13 N -0.790 5.790 14 Si 0.915 3.085 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.240 1.240 18 C -0.250 4.250 19 C 0.151 3.849 20 F -0.158 7.158 21 C -0.033 4.033 22 C -0.196 4.196 23 C 0.248 3.752 24 N -0.871 5.871 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.290 0.710 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.401 0.599 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 13.497 3.507 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.045 4.045 3 C -0.128 4.128 4 C -0.048 4.048 5 C -0.050 4.050 6 C -0.232 4.232 7 C -0.050 4.050 8 C -0.267 4.267 9 C 0.110 3.890 10 C -0.454 4.454 11 H 0.114 0.886 12 C -0.139 4.139 13 N -0.412 5.412 14 Si 0.740 3.260 15 H -0.192 1.192 16 H -0.215 1.215 17 H -0.163 1.163 18 C -0.270 4.270 19 C 0.131 3.869 20 F -0.137 7.137 21 C -0.053 4.053 22 C -0.219 4.219 23 C 0.139 3.861 24 N -0.409 5.409 25 H 0.148 0.852 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.230 0.770 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.258 13.212 3.499 14.644 hybrid contribution 0.279 0.417 0.623 0.800 sum -4.979 13.629 4.122 15.084 Atomic orbital electron populations 1.81227 1.12040 1.07573 1.11437 1.25702 0.92620 0.93515 0.92651 1.15406 0.83762 0.94310 1.19300 1.21118 0.93439 0.95598 0.94601 1.18397 0.91533 0.93069 1.02037 1.17817 1.04442 0.94024 1.06948 1.20265 0.97185 0.91401 0.96119 1.20773 1.01561 0.97815 1.06532 1.17512 0.90111 0.91676 0.89675 1.19572 1.28045 0.98647 0.99169 0.88616 1.26302 0.91286 0.93484 1.02846 1.69688 1.31701 1.03415 1.36417 0.86246 0.78277 0.81740 0.79734 1.19226 1.21528 1.16295 1.20642 1.05217 0.91999 1.09170 1.17250 0.95439 0.82409 0.91770 1.91366 1.92523 1.52725 1.77078 1.21332 1.00141 0.91110 0.92713 1.20397 0.90863 0.99281 1.11351 1.17580 0.91304 0.84968 0.92199 1.42327 1.09091 1.07768 1.81676 0.85176 0.87726 0.87602 0.89898 0.86897 0.85448 0.85560 0.76983 0.77598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.83 18.54 41.84 0.78 -6.06 16 2 C 0.27 3.74 14.07 -22.47 -0.32 3.43 16 3 C -0.12 -1.58 5.75 -106.68 -0.61 -2.20 16 4 C -0.03 -0.39 9.20 -38.77 -0.36 -0.75 16 5 C -0.05 -0.78 5.31 -104.91 -0.56 -1.34 16 6 C -0.23 -4.40 5.49 -104.56 -0.57 -4.98 16 7 C -0.03 -0.61 9.42 -39.66 -0.37 -0.98 16 8 C -0.25 -5.41 7.10 -39.27 -0.28 -5.69 16 9 C 0.11 2.66 5.10 -106.81 -0.54 2.11 16 10 C -0.43 -10.64 9.54 -37.90 -0.36 -11.00 16 11 H 0.10 2.49 8.06 -52.49 -0.42 2.07 16 12 C 0.08 1.99 5.40 -17.34 -0.09 1.90 16 13 N -0.79 -19.46 13.93 55.55 0.77 -18.68 16 14 Si 0.91 19.05 24.51 -169.99 -4.17 14.89 16 15 H -0.27 -5.37 6.70 56.52 0.38 -4.99 16 16 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.24 -5.10 6.87 56.52 0.39 -4.72 16 18 C -0.25 -5.50 9.70 -39.23 -0.38 -5.88 16 19 C 0.15 3.08 7.10 -39.49 -0.28 2.80 16 20 F -0.16 -3.05 15.84 2.25 0.04 -3.01 16 21 C -0.03 -0.47 8.83 -39.16 -0.35 -0.82 16 22 C -0.20 -2.25 9.86 -39.48 -0.39 -2.64 16 23 C 0.25 2.86 6.76 -83.53 -0.56 2.30 16 24 N -0.87 -7.43 8.97 32.60 0.29 -7.13 16 25 H 0.13 1.85 8.03 -52.49 -0.42 1.43 16 26 H 0.10 1.78 8.03 -52.49 -0.42 1.35 16 27 H 0.11 2.29 4.72 -52.49 -0.25 2.04 16 28 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 29 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 30 H 0.13 1.76 7.75 -52.49 -0.41 1.35 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.40 2.37 8.83 -40.82 -0.36 2.00 16 33 H 0.40 3.36 7.66 -40.82 -0.31 3.04 16 LS Contribution 298.61 15.07 4.50 4.50 Total: -1.00 -25.91 298.61 -6.43 -32.34 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.61 Total: 6.91 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -6.03 Total: -23.75 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 1.84 Total: -31.88 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.17 Total: 14.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -25.91 -6.43 -32.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244114932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.700 kcal (2) G-P(sol) polarization free energy of solvation -25.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds