Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38583 * 120.86015 * 2 1 4 4 F 1.35103 * 120.37432 * 0.02562 * 3 2 1 5 5 C 1.38574 * 119.25585 * 179.97438 * 3 2 1 6 6 N 1.31942 * 121.04025 * 0.02562 * 5 3 2 7 7 C 1.31660 * 121.90129 * 359.97438 * 6 5 3 8 8 C 1.39600 * 120.61517 * 359.97438 * 7 6 5 9 9 C 1.48039 * 120.54045 * 179.97438 * 8 7 6 10 10 C 1.39963 * 119.49455 * 130.00094 * 9 8 7 11 11 C 1.36019 * 121.19447 * 179.97438 * 10 9 8 12 12 C 1.41041 * 120.10744 * 359.95859 * 11 10 9 13 13 C 1.40445 * 120.49110 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99830 * 204.71633 * 13 12 11 15 15 C 1.40310 * 120.00103 * 24.71500 * 13 12 11 16 16 N 1.30624 * 119.99801 * 17.50187 * 15 13 12 17 17 Si 1.86805 * 120.00115 * 197.50237 * 15 13 12 18 18 H 1.48494 * 109.47019 * 89.99762 * 17 15 13 19 19 H 1.48492 * 109.47134 * 210.00181 * 17 15 13 20 20 H 1.48503 * 109.46641 * 330.00115 * 17 15 13 21 21 C 1.46638 * 119.01566 * 0.02562 * 12 11 10 22 22 C 1.43200 * 120.56443 * 179.97438 * 21 12 11 23 23 N 7.03833 * 92.71935 * 202.05040 * 2 1 3 24 24 C 1.39095 * 118.87403 * 359.76634 * 21 12 11 25 25 H 1.09005 * 109.47071 * 269.97435 * 1 2 3 26 26 H 1.08991 * 109.47258 * 29.97790 * 1 2 3 27 27 H 1.09004 * 109.47025 * 149.97934 * 1 2 3 28 28 H 1.08000 * 119.48038 * 180.02562 * 5 3 2 29 29 H 1.07998 * 119.69271 * 179.97438 * 7 6 5 30 30 H 1.07994 * 119.40767 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.94809 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99968 * 180.02562 * 16 15 13 33 33 H 1.08002 * 120.10062 * 180.22794 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2179 1.1896 0.0000 4 9 1.5678 2.3739 0.0005 5 6 3.6031 1.1508 0.0005 6 7 4.2515 0.0017 0.0005 7 6 3.6200 -1.1535 0.0005 8 6 2.2248 -1.2011 0.0011 9 6 1.5165 -2.5010 0.0005 10 6 0.4995 -2.7320 0.9340 11 6 -0.1742 -3.9132 0.9640 12 6 0.1453 -4.9335 0.0441 13 6 -0.5455 -6.1561 0.0676 14 1 -0.0785 -7.0478 -0.3238 15 6 -1.8423 -6.2191 0.5996 16 7 -2.5383 -5.1247 0.7553 17 14 -2.5735 -7.8680 1.0854 18 1 -2.2450 -8.1563 2.5046 19 1 -4.0483 -7.8242 0.9177 20 1 -2.0084 -8.9343 0.2200 21 6 1.2094 -4.6988 -0.9371 22 6 1.5613 -5.7119 -1.8860 23 7 1.8410 -6.5162 -2.6394 24 6 1.8682 -3.4738 -0.9334 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.1607 2.0758 0.0010 29 1 4.1866 -2.0729 0.0001 30 1 0.2450 -1.9584 1.6432 31 1 -0.9552 -4.0701 1.6933 32 1 -3.4346 -5.1681 1.1234 33 1 2.6525 -3.2784 -1.6498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244831784.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = 17.610659 kcal Electronic energy + Delta-G solvation = -20336.334634 eV Core-core repulsion = 17047.446600 eV Total energy + Delta-G solvation = -3288.888034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.79726 -39.90255 -37.81473 -35.30679 -34.68667 -33.41264 -31.39117 -30.10197 -29.29880 -27.70702 -25.85153 -23.15462 -22.39647 -21.87074 -20.82126 -17.97432 -17.65345 -17.00385 -16.31100 -16.08180 -15.77451 -15.58587 -14.58269 -14.19221 -13.69202 -13.62347 -13.32098 -13.04794 -12.84195 -12.68495 -12.58021 -12.42329 -12.17542 -11.90926 -11.80791 -11.64784 -11.46641 -11.25374 -10.92862 -10.81911 -10.18740 -10.05040 -9.75290 -9.34819 -9.06707 -8.70471 -7.93629 -7.65740 -7.34921 -4.90929 1.12302 1.31124 2.06058 2.48068 2.80853 2.85463 2.89983 3.54508 3.77902 3.83900 4.04659 4.27222 4.30967 4.69640 4.88748 4.99363 5.04601 5.23450 5.32325 5.66607 5.70480 5.79737 5.85203 6.05309 6.07762 6.15042 6.31005 6.46489 6.51277 6.63655 6.83434 6.89886 7.03861 7.30372 7.47599 7.59740 7.68118 8.02741 8.09371 8.21442 8.36331 8.70165 9.51591 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.004619 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.297829 B = 6060.055640 C = 6950.957021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C 0.045 3.955 4 F -0.137 7.137 5 C 0.043 3.957 6 N -0.462 5.462 7 C 0.080 3.920 8 C -0.009 4.009 9 C -0.211 4.211 10 C -0.050 4.050 11 C -0.166 4.166 12 C 0.155 3.845 13 C -0.413 4.413 14 H 0.090 0.910 15 C 0.074 3.926 16 N -0.750 5.750 17 Si 0.918 3.082 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.256 1.256 21 C -0.187 4.187 22 C 0.298 3.702 23 N -0.505 5.505 24 C 0.005 3.995 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.294 0.706 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 7.735 3.479 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C 0.024 3.976 4 F -0.116 7.116 5 C -0.114 4.114 6 N -0.169 5.169 7 C -0.078 4.078 8 C -0.011 4.011 9 C -0.213 4.213 10 C -0.070 4.070 11 C -0.185 4.185 12 C 0.149 3.851 13 C -0.439 4.439 14 H 0.108 0.892 15 C -0.151 4.151 16 N -0.371 5.371 17 Si 0.740 3.260 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.193 4.193 22 C -0.012 4.012 23 N -0.184 5.184 24 C -0.016 4.016 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.150 6.643 2.372 7.374 hybrid contribution -1.577 0.001 0.504 1.656 sum 0.573 6.644 2.876 7.263 Atomic orbital electron populations 1.20798 0.89339 1.03806 1.02962 1.20579 0.97794 0.91033 1.00019 1.18627 0.91719 0.81094 1.06158 1.91458 1.81650 1.44377 1.94092 1.22638 0.89455 0.97481 1.01854 1.67571 1.40121 0.97944 1.11284 1.23086 0.91384 0.95709 0.97626 1.19755 0.93295 0.92909 0.95138 1.17467 1.05407 0.92939 1.05509 1.20433 0.93637 0.96636 0.96257 1.20912 1.02540 0.93818 1.01189 1.18503 0.87441 0.92311 0.86850 1.19910 0.97927 0.96084 1.30005 0.89220 1.26204 0.97051 0.99431 0.92412 1.69691 1.10420 1.30099 1.26858 0.86097 0.78445 0.80930 0.80488 1.18394 1.19539 1.17930 1.16706 1.09674 0.92086 1.00869 1.25763 0.91235 0.92282 0.91888 1.81083 1.12779 1.11150 1.13340 1.20500 0.95319 0.90671 0.95065 0.90626 0.91810 0.89147 0.82590 0.82179 0.88589 0.85507 0.89423 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.35 36.01 0.30 -1.30 16 2 C -0.09 -1.33 5.90 -103.86 -0.61 -1.94 16 3 C 0.05 0.67 7.28 -39.33 -0.29 0.38 16 4 F -0.14 -1.94 16.61 2.25 0.04 -1.90 16 5 C 0.04 0.61 11.16 -17.38 -0.19 0.42 16 6 N -0.46 -7.13 10.34 -12.84 -0.13 -7.26 16 7 C 0.08 1.24 10.67 -17.12 -0.18 1.05 16 8 C -0.01 -0.14 5.45 -104.74 -0.57 -0.72 16 9 C -0.21 -3.79 4.81 -104.81 -0.50 -4.29 16 10 C -0.05 -0.93 7.83 -39.73 -0.31 -1.24 16 11 C -0.17 -3.43 8.63 -39.32 -0.34 -3.77 16 12 C 0.15 3.44 5.74 -104.62 -0.60 2.84 16 13 C -0.41 -9.34 8.56 -37.97 -0.33 -9.67 16 14 H 0.09 2.07 7.37 -52.49 -0.39 1.68 16 15 C 0.07 1.55 5.15 -17.29 -0.09 1.46 16 16 N -0.75 -15.75 10.95 55.57 0.61 -15.14 16 17 Si 0.92 15.93 29.60 -169.99 -5.03 10.90 16 18 H -0.26 -4.42 7.11 56.52 0.40 -4.01 16 19 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 20 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 21 C -0.19 -3.98 5.93 -104.27 -0.62 -4.60 16 22 C 0.30 6.62 14.29 -22.44 -0.32 6.30 16 23 N -0.50 -11.66 18.54 41.87 0.78 -10.88 16 24 C 0.01 0.10 9.20 -38.84 -0.36 -0.26 16 25 H 0.08 1.00 7.56 -51.93 -0.39 0.61 16 26 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 27 H 0.09 1.41 6.59 -51.93 -0.34 1.07 16 28 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.16 2.25 8.04 -52.49 -0.42 1.83 16 30 H 0.10 1.61 6.87 -52.49 -0.36 1.24 16 31 H 0.13 2.68 6.17 -52.49 -0.32 2.35 16 32 H 0.29 5.51 8.29 -40.82 -0.34 5.17 16 33 H 0.10 1.74 8.03 -52.49 -0.42 1.32 16 LS Contribution 301.03 15.07 4.54 4.54 Total: -1.00 -23.61 301.03 -6.83 -30.43 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -2.61 Total: 4.65 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -5.01 Total: -15.34 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 1.25 Total: -33.28 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 15.93 SS G_CDS: -5.03 Total: 10.90 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -23.61 -6.83 -30.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244831784.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.045 kcal (2) G-P(sol) polarization free energy of solvation -23.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds