Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38583 * 120.86015 * 2 1 4 4 F 1.35103 * 120.37432 * 0.02562 * 3 2 1 5 5 C 1.38574 * 119.25585 * 179.97438 * 3 2 1 6 6 N 1.31942 * 121.04025 * 0.02562 * 5 3 2 7 7 C 1.31660 * 121.90129 * 359.97438 * 6 5 3 8 8 C 1.39600 * 120.61517 * 359.97438 * 7 6 5 9 9 C 1.48039 * 120.54045 * 179.97438 * 8 7 6 10 10 C 1.39963 * 119.49455 * 130.00094 * 9 8 7 11 11 C 1.36019 * 121.19447 * 179.97438 * 10 9 8 12 12 C 1.41041 * 120.10744 * 359.95859 * 11 10 9 13 13 C 1.40445 * 120.49110 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99830 * 204.71633 * 13 12 11 15 15 C 1.40310 * 120.00103 * 24.71500 * 13 12 11 16 16 N 1.30624 * 119.99801 * 17.50187 * 15 13 12 17 17 Si 1.86805 * 120.00115 * 197.50237 * 15 13 12 18 18 H 1.48494 * 109.47019 * 89.99762 * 17 15 13 19 19 H 1.48492 * 109.47134 * 210.00181 * 17 15 13 20 20 H 1.48503 * 109.46641 * 330.00115 * 17 15 13 21 21 C 1.46638 * 119.01566 * 0.02562 * 12 11 10 22 22 C 1.43200 * 120.56443 * 179.97438 * 21 12 11 23 23 N 7.03833 * 92.71935 * 202.05040 * 2 1 3 24 24 C 1.39095 * 118.87403 * 359.76634 * 21 12 11 25 25 H 1.09005 * 109.47071 * 269.97435 * 1 2 3 26 26 H 1.08991 * 109.47258 * 29.97790 * 1 2 3 27 27 H 1.09004 * 109.47025 * 149.97934 * 1 2 3 28 28 H 1.08000 * 119.48038 * 180.02562 * 5 3 2 29 29 H 1.07998 * 119.69271 * 179.97438 * 7 6 5 30 30 H 1.07994 * 119.40767 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.94809 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99968 * 180.02562 * 16 15 13 33 33 H 1.08002 * 120.10062 * 180.22794 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2179 1.1896 0.0000 4 9 1.5678 2.3739 0.0005 5 6 3.6031 1.1508 0.0005 6 7 4.2515 0.0017 0.0005 7 6 3.6200 -1.1535 0.0005 8 6 2.2248 -1.2011 0.0011 9 6 1.5165 -2.5010 0.0005 10 6 0.4995 -2.7320 0.9340 11 6 -0.1742 -3.9132 0.9640 12 6 0.1453 -4.9335 0.0441 13 6 -0.5455 -6.1561 0.0676 14 1 -0.0785 -7.0478 -0.3238 15 6 -1.8423 -6.2191 0.5996 16 7 -2.5383 -5.1247 0.7553 17 14 -2.5735 -7.8680 1.0854 18 1 -2.2450 -8.1563 2.5046 19 1 -4.0483 -7.8242 0.9177 20 1 -2.0084 -8.9343 0.2200 21 6 1.2094 -4.6988 -0.9371 22 6 1.5613 -5.7119 -1.8860 23 7 1.8410 -6.5162 -2.6394 24 6 1.8682 -3.4738 -0.9334 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.1607 2.0758 0.0010 29 1 4.1866 -2.0729 0.0001 30 1 0.2450 -1.9584 1.6432 31 1 -0.9552 -4.0701 1.6933 32 1 -3.4346 -5.1681 1.1234 33 1 2.6525 -3.2784 -1.6498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244831784.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = 8.765368 kcal Electronic energy + Delta-G solvation = -20336.718195 eV Core-core repulsion = 17047.446600 eV Total energy + Delta-G solvation = -3289.271595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.92229 -41.14701 -39.34503 -37.02603 -36.18640 -34.73807 -32.75021 -31.67915 -30.70596 -28.93402 -27.32933 -24.51326 -23.93243 -23.10067 -22.29448 -19.54934 -19.09913 -18.22136 -17.64477 -17.24399 -17.20390 -16.80414 -16.03908 -15.73569 -15.16156 -14.82532 -14.59321 -14.51809 -14.43847 -13.92498 -13.88682 -13.64491 -13.56944 -13.49449 -13.44973 -13.22729 -12.87745 -12.59977 -12.42272 -12.24501 -11.72139 -11.60967 -11.25344 -10.58692 -10.33767 -9.93053 -9.50794 -9.18607 -8.89133 -6.55527 -0.09066 0.10178 0.44420 0.98842 1.37617 1.48975 1.50116 2.03201 2.12102 2.34241 2.61185 2.74325 3.10196 3.52299 3.55462 3.65200 3.78080 3.82782 3.89129 4.30950 4.37483 4.57509 4.63081 4.75114 4.84651 4.89858 4.90509 5.08027 5.11687 5.24291 5.32755 5.46209 5.63159 5.82577 5.88005 6.04817 6.08465 6.41950 6.59491 6.74611 6.91539 6.96722 8.00441 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.004619 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.297829 B = 6060.055640 C = 6950.957021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C 0.042 3.958 4 F -0.132 7.132 5 C 0.057 3.943 6 N -0.474 5.474 7 C 0.083 3.917 8 C -0.029 4.029 9 C -0.192 4.192 10 C -0.041 4.041 11 C -0.178 4.178 12 C 0.137 3.863 13 C -0.450 4.450 14 H 0.072 0.928 15 C 0.047 3.953 16 N -0.771 5.771 17 Si 0.977 3.023 18 H -0.251 1.251 19 H -0.259 1.259 20 H -0.270 1.270 21 C -0.208 4.208 22 C 0.305 3.695 23 N -0.530 5.530 24 C 0.005 3.995 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.188 0.812 29 H 0.171 0.829 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.304 0.696 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 9.685 4.202 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C 0.020 3.980 4 F -0.111 7.111 5 C -0.101 4.101 6 N -0.182 5.182 7 C -0.074 4.074 8 C -0.031 4.031 9 C -0.194 4.194 10 C -0.060 4.060 11 C -0.198 4.198 12 C 0.131 3.869 13 C -0.476 4.476 14 H 0.090 0.910 15 C -0.176 4.176 16 N -0.393 5.393 17 Si 0.797 3.203 18 H -0.175 1.175 19 H -0.183 1.183 20 H -0.194 1.194 21 C -0.214 4.214 22 C -0.004 4.004 23 N -0.210 5.210 24 C -0.016 4.016 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.205 0.795 29 H 0.188 0.812 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.471 8.611 3.096 9.478 hybrid contribution -1.563 -0.329 0.283 1.622 sum 0.908 8.282 3.379 8.990 Atomic orbital electron populations 1.20806 0.88705 1.03659 1.03655 1.20729 0.98384 0.91144 0.99100 1.18626 0.91989 0.80961 1.06400 1.91476 1.81602 1.43960 1.94058 1.23168 0.89489 0.98192 0.99262 1.67673 1.40235 0.98233 1.12013 1.23249 0.91098 0.96422 0.96624 1.19618 0.93679 0.92229 0.97561 1.17611 1.04331 0.93381 1.04050 1.20634 0.92923 0.96160 0.96267 1.20876 1.03219 0.94466 1.01193 1.18756 0.87906 0.92825 0.87404 1.19951 0.99329 0.95848 1.32490 0.90981 1.26760 0.96639 1.02230 0.91954 1.69676 1.11078 1.31336 1.27193 0.85245 0.78126 0.76855 0.80067 1.17533 1.18256 1.19422 1.16883 1.10521 0.92880 1.01079 1.26010 0.90651 0.92101 0.91650 1.81057 1.13837 1.11728 1.14350 1.20687 0.95449 0.89905 0.95513 0.89472 0.90484 0.90773 0.79508 0.81163 0.86514 0.86215 0.88398 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.93 8.35 71.24 0.59 -2.33 16 2 C -0.09 -2.41 5.90 -19.37 -0.11 -2.52 16 3 C 0.04 1.08 7.28 22.43 0.16 1.25 16 4 F -0.13 -3.29 16.61 44.97 0.75 -2.54 16 5 C 0.06 1.39 11.16 84.76 0.95 2.33 16 6 N -0.47 -13.16 10.34 -194.53 -2.01 -15.18 16 7 C 0.08 2.37 10.67 85.05 0.91 3.28 16 8 C -0.03 -0.87 5.45 -19.94 -0.11 -0.98 16 9 C -0.19 -6.61 4.81 -19.99 -0.10 -6.71 16 10 C -0.04 -1.47 7.83 22.17 0.17 -1.29 16 11 C -0.18 -7.44 8.63 22.44 0.19 -7.25 16 12 C 0.14 6.23 5.74 -19.86 -0.11 6.12 16 13 C -0.45 -21.13 8.56 23.31 0.20 -20.93 16 14 H 0.07 3.52 7.37 -2.91 -0.02 3.50 16 15 C 0.05 2.00 5.15 85.38 0.44 2.44 16 16 N -0.77 -32.70 10.95 21.89 0.24 -32.46 16 17 Si 0.98 32.96 29.60 68.60 2.03 34.99 16 18 H -0.25 -8.07 7.11 99.48 0.71 -7.37 16 19 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 21 C -0.21 -8.97 5.93 -19.63 -0.12 -9.09 16 22 C 0.30 13.87 14.29 88.32 1.26 15.13 16 23 N -0.53 -25.06 18.54 19.02 0.35 -24.71 16 24 C 0.01 0.19 9.20 22.75 0.21 0.40 16 25 H 0.09 2.08 7.56 -2.38 -0.02 2.06 16 26 H 0.08 1.80 7.73 -2.39 -0.02 1.78 16 27 H 0.07 2.20 6.59 -2.38 -0.02 2.18 16 28 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 29 H 0.17 4.40 8.04 -2.91 -0.02 4.38 16 30 H 0.12 3.67 6.87 -2.91 -0.02 3.65 16 31 H 0.12 5.13 6.17 -2.91 -0.02 5.11 16 32 H 0.30 11.35 8.29 -92.71 -0.77 10.58 16 33 H 0.12 3.95 8.03 -2.91 -0.02 3.93 16 Total: -1.00 -50.34 301.03 7.07 -43.28 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.17 Total: 16.79 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 4.54 Total: -20.16 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.42 Total: -72.35 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.75 Total: -2.54 kcal Atomic # 14 Polarization: 32.96 SS G_CDS: 2.03 Total: 34.99 kcal Total: -50.34 7.07 -43.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244831784.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.041 kcal (2) G-P(sol) polarization free energy of solvation -50.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds