Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47424 * 2 1 4 4 N 1.46495 * 109.47741 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00611 * 180.02562 * 4 3 2 6 6 S 1.71203 * 119.99660 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00317 * 179.97438 * 5 4 3 8 8 C 1.39981 * 119.99952 * 176.21438 * 7 5 4 9 9 C 1.39377 * 119.91015 * 44.96952 * 8 7 5 10 10 C 1.38369 * 120.46687 * 180.02562 * 9 8 7 11 11 C 1.38012 * 120.28914 * 359.97438 * 10 9 8 12 12 F 1.35102 * 120.09168 * 179.97438 * 11 10 9 13 13 C 1.41004 * 119.81228 * 0.02562 * 11 10 9 14 14 C 1.41297 * 120.23017 * 179.97438 * 13 11 10 15 15 H 1.07994 * 119.99667 * 329.36236 * 14 13 11 16 16 C 1.39924 * 120.00237 * 149.63337 * 14 13 11 17 17 N 1.30846 * 119.99890 * 155.60977 * 16 14 13 18 18 Si 1.86797 * 119.99766 * 335.61394 * 16 14 13 19 19 H 1.48496 * 109.47343 * 88.01866 * 18 16 14 20 20 H 1.48502 * 109.47089 * 208.01735 * 18 16 14 21 21 H 1.48501 * 109.47433 * 328.01782 * 18 16 14 22 22 C 1.38153 * 119.91317 * 225.20415 * 8 7 5 23 23 H 1.08997 * 109.46675 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46963 * 299.99924 * 1 2 3 25 25 H 1.08999 * 109.46640 * 60.00582 * 1 2 3 26 26 H 1.09001 * 109.47355 * 239.99542 * 2 1 3 27 27 H 1.09008 * 109.47001 * 119.99895 * 2 1 3 28 28 H 1.09001 * 109.47229 * 59.99464 * 3 2 1 29 29 H 1.09008 * 109.46946 * 299.99929 * 3 2 1 30 30 H 0.96999 * 119.99492 * 359.97438 * 4 3 2 31 31 H 0.97000 * 120.00175 * 356.21561 * 7 5 4 32 32 H 1.08001 * 119.76799 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.85282 * 179.97438 * 10 9 8 34 34 H 0.97004 * 120.00158 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.14146 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6096 -0.0002 6 16 3.3229 4.0922 0.0004 7 7 5.5267 2.6096 -0.0003 8 6 6.2266 3.8193 -0.0799 9 6 5.8339 4.9023 0.7046 10 6 6.5171 6.1035 0.6346 11 6 7.5969 6.2418 -0.2137 12 9 8.2608 7.4167 -0.2792 13 6 8.0045 5.1539 -1.0127 14 6 9.1084 5.2859 -1.8847 15 1 9.3354 6.2446 -2.3270 16 6 9.9040 4.1732 -2.1797 17 7 10.5924 4.1376 -3.2918 18 14 9.9832 2.7388 -0.9857 19 1 8.8909 1.7801 -1.2906 20 1 11.2943 2.0546 -1.1203 21 1 9.8273 3.2414 0.4030 22 6 7.3017 3.9379 -0.9393 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.9900 0.6024 -0.0006 31 1 6.0117 1.7714 0.0549 32 1 4.9898 4.8036 1.3711 33 1 6.2040 6.9365 1.2466 34 1 11.1437 3.3661 -3.4965 35 1 7.6034 3.0993 -1.5494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244898825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -33.835447 kcal Electronic energy + Delta-G solvation = -19254.309184 eV Core-core repulsion = 16098.634231 eV Total energy + Delta-G solvation = -3155.674953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.28776 -40.90839 -39.11307 -36.90160 -35.46146 -33.85096 -32.43621 -30.16933 -27.25224 -27.19572 -24.92209 -23.68264 -23.04743 -22.14663 -19.74569 -19.53683 -18.49891 -18.19130 -17.20267 -16.90243 -16.59420 -16.42340 -16.17300 -16.05065 -15.22271 -15.00032 -14.64529 -14.04309 -13.96701 -13.88942 -13.64696 -13.37933 -13.03745 -12.83275 -12.65267 -12.39261 -12.26560 -12.06393 -11.96713 -11.74988 -11.66644 -11.08611 -10.54764 -9.76167 -9.24780 -8.96742 -8.92175 -8.24330 -6.50326 0.00485 0.63773 0.70189 0.90127 1.20353 1.38456 1.48585 1.49956 2.08983 2.48471 2.53795 3.25715 3.82191 3.88949 4.06135 4.13761 4.28882 4.51156 4.60892 4.65376 4.66940 4.69152 4.76592 4.86923 5.12762 5.14500 5.22115 5.22998 5.44019 5.45445 5.59908 5.66577 5.73746 5.92468 6.06447 6.28408 6.35135 6.60846 6.68637 8.13063 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.004885 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.217593 B = 5729.896903 C = 6711.874842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.123 3.877 4 N -0.658 5.658 5 C 0.577 3.423 6 S -0.708 6.708 7 N -0.613 5.613 8 C 0.152 3.848 9 C -0.144 4.144 10 C -0.107 4.107 11 C -0.030 4.030 12 F -0.166 7.166 13 C 0.056 3.944 14 C -0.488 4.488 15 H 0.050 0.950 16 C 0.050 3.950 17 N -0.837 5.837 18 Si 0.962 3.038 19 H -0.235 1.235 20 H -0.271 1.271 21 H -0.255 1.255 22 C -0.217 4.217 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.418 0.582 31 H 0.421 0.579 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.297 0.703 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 -16.239 8.083 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.000 4.000 4 N -0.287 5.287 5 C 0.215 3.785 6 S -0.581 6.581 7 N -0.239 5.239 8 C 0.059 3.941 9 C -0.166 4.166 10 C -0.128 4.128 11 C -0.050 4.050 12 F -0.145 7.145 13 C 0.052 3.948 14 C -0.517 4.517 15 H 0.068 0.932 16 C -0.166 4.166 17 N -0.462 5.462 18 Si 0.782 3.218 19 H -0.159 1.159 20 H -0.196 1.196 21 H -0.179 1.179 22 C -0.238 4.238 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.258 0.742 31 H 0.262 0.738 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.108 0.892 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.510 -15.313 7.838 21.874 hybrid contribution 1.491 -0.941 -0.264 1.783 sum -12.019 -16.255 7.573 21.588 Atomic orbital electron populations 1.21669 0.93660 1.02953 1.02442 1.21739 0.97614 0.93180 1.03931 1.21917 0.74829 0.99493 1.03799 1.45000 1.09306 1.04836 1.69578 1.21815 0.84559 0.92317 0.79859 1.93585 1.68039 1.19962 1.76534 1.42006 1.02854 1.09684 1.69350 1.17126 0.93434 0.85881 0.97614 1.20780 1.00982 0.91869 1.02962 1.20735 0.93991 0.99053 0.98988 1.18280 0.98789 0.83460 1.04498 1.91277 1.80905 1.46286 1.96017 1.17492 0.94124 0.91361 0.91789 1.19201 1.11405 0.97091 1.24021 0.93154 1.26932 0.92640 1.01254 0.95764 1.69776 1.22716 1.32101 1.21654 0.85595 0.78889 0.77463 0.79821 1.15918 1.19637 1.17869 1.20744 1.00137 0.98947 1.04006 0.90809 0.92270 0.92598 0.90260 0.89816 0.90375 0.91033 0.74241 0.73797 0.83906 0.84649 0.89204 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.13 -1.08 6.05 30.59 0.19 -0.90 16 3 C 0.12 1.96 5.13 86.38 0.44 2.40 16 4 N -0.66 -11.31 5.56 -350.19 -1.95 -13.26 16 5 C 0.58 16.04 7.84 179.06 1.40 17.45 16 6 S -0.71 -27.08 24.80 -56.49 -1.40 -28.49 16 7 N -0.61 -17.32 5.32 -190.09 -1.01 -18.33 16 8 C 0.15 5.88 5.93 38.09 0.23 6.11 16 9 C -0.14 -5.79 7.87 22.58 0.18 -5.61 16 10 C -0.11 -4.62 10.00 22.25 0.22 -4.40 16 11 C -0.03 -1.49 7.31 22.89 0.17 -1.32 16 12 F -0.17 -8.57 16.78 44.97 0.75 -7.82 16 13 C 0.06 2.90 5.03 -21.26 -0.11 2.79 16 14 C -0.49 -27.76 9.19 23.43 0.22 -27.55 16 15 H 0.05 3.20 7.98 -2.91 -0.02 3.18 16 16 C 0.05 2.60 5.29 85.25 0.45 3.05 16 17 N -0.84 -44.71 13.93 21.82 0.30 -44.41 16 18 Si 0.96 38.39 25.14 68.60 1.72 40.11 16 19 H -0.24 -8.00 6.37 99.48 0.63 -7.36 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.22 -9.55 7.35 22.84 0.17 -9.38 16 23 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.08 1.46 7.99 -2.39 -0.02 1.44 16 29 H 0.07 1.44 7.99 -2.38 -0.02 1.42 16 30 H 0.42 3.94 8.49 -92.71 -0.79 3.16 16 31 H 0.42 8.41 8.84 -92.71 -0.82 7.59 16 32 H 0.14 5.57 6.06 -8.65 -0.05 5.52 16 33 H 0.14 5.12 8.06 -2.91 -0.02 5.10 16 34 H 0.30 13.98 8.30 -92.71 -0.77 13.21 16 35 H 0.12 5.07 5.10 -2.91 -0.01 5.05 16 Total: -1.00 -70.51 308.51 2.11 -68.39 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.58 Total: 21.72 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.27 Total: -17.93 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.65 Total: -75.99 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.75 Total: -7.82 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.72 Total: 40.11 kcal Atomic # 16 Polarization: -27.08 SS G_CDS: -1.40 Total: -28.49 kcal Total: -70.51 2.11 -68.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244898825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.557 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds