Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31269 * 119.80149 * 2 1 4 4 C 1.33041 * 121.71850 * 180.26171 * 3 2 1 5 5 C 1.47908 * 119.44779 * 179.74642 * 4 3 2 6 6 C 1.39673 * 120.08829 * 179.72788 * 5 4 3 7 7 C 1.38050 * 120.19892 * 180.02562 * 6 5 4 8 8 C 1.38100 * 120.38251 * 0.02562 * 7 6 5 9 9 C 1.39729 * 120.17538 * 359.97438 * 8 7 6 10 10 C 1.43205 * 120.09619 * 179.70161 * 9 8 7 11 11 N 7.19181 * 99.73845 * 359.84517 * 2 1 3 12 12 C 1.39661 * 120.09078 * 359.71156 * 5 4 3 13 13 F 1.35104 * 120.18824 * 0.04109 * 12 5 4 14 14 C 1.39928 * 121.09804 * 359.47958 * 4 3 2 15 15 C 1.36585 * 119.46391 * 0.24557 * 14 4 3 16 16 C 1.40949 * 119.79755 * 179.74121 * 2 1 3 17 17 C 1.41050 * 120.55078 * 359.97438 * 16 2 1 18 18 H 1.07996 * 119.99603 * 334.73246 * 17 16 2 19 19 C 1.40016 * 119.99860 * 154.72892 * 17 16 2 20 20 N 1.30794 * 119.99851 * 343.52946 * 19 17 16 21 21 Si 1.86801 * 119.99519 * 163.52729 * 19 17 16 22 22 H 1.48496 * 109.46853 * 93.75827 * 21 19 17 23 23 H 1.48499 * 109.46716 * 213.75675 * 21 19 17 24 24 H 1.48500 * 109.47329 * 333.75747 * 21 19 17 25 25 H 1.08998 * 109.47201 * 270.25601 * 1 2 3 26 26 H 1.09000 * 109.46775 * 30.25928 * 1 2 3 27 27 H 1.08996 * 109.47362 * 150.25655 * 1 2 3 28 28 H 1.08000 * 119.89713 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.81016 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.91156 * 179.97438 * 8 7 6 31 31 H 1.08000 * 120.26868 * 180.27434 * 14 4 3 32 32 H 1.07999 * 120.79012 * 179.97438 * 15 14 4 33 33 H 0.97001 * 119.99546 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4891 1.1836 -0.0052 5 6 4.1727 2.4952 -0.0106 6 6 5.5680 2.5575 -0.0103 7 6 6.2085 3.7805 -0.0149 8 6 5.4771 4.9519 -0.0192 9 6 4.0805 4.9080 -0.0195 10 6 3.3238 6.1238 -0.0175 11 7 2.7235 7.0882 -0.0192 12 6 3.4248 3.6746 -0.0164 13 9 2.0747 3.6230 -0.0162 14 6 4.2515 0.0103 0.0000 15 6 3.6204 -1.2010 0.0055 16 6 2.2074 -1.2231 0.0055 17 6 1.5096 -2.4489 0.0116 18 1 0.5076 -2.4978 0.4115 19 6 2.1160 -3.6022 -0.5008 20 7 3.1721 -3.5009 -1.2658 21 14 1.4167 -5.2854 -0.0919 22 1 0.4743 -5.7028 -1.1608 23 1 2.5233 -6.2709 0.0051 24 1 0.6966 -5.2205 1.2053 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8922 -0.5098 28 1 6.1476 1.6462 -0.0057 29 1 7.2877 3.8214 -0.0142 30 1 5.9860 5.9045 -0.0223 31 1 5.3303 0.0621 0.0002 32 1 4.1878 -2.1200 0.0091 33 1 3.5920 -4.3000 -1.6211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245069037.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = 29.912444 kcal Electronic energy + Delta-G solvation = -20396.405217 eV Core-core repulsion = 17108.050628 eV Total energy + Delta-G solvation = -3288.354589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.26978 -39.22524 -38.25245 -36.29365 -34.46669 -32.61700 -31.10103 -30.80093 -29.74327 -27.11530 -25.37176 -23.90142 -22.67343 -20.98329 -20.50151 -18.43208 -17.60002 -16.90467 -16.32219 -15.58027 -15.22237 -15.07507 -14.58974 -14.34055 -13.97033 -13.47712 -13.24437 -13.15500 -13.04577 -12.80125 -12.39776 -12.09645 -12.01813 -11.83537 -11.77841 -11.49510 -11.36773 -11.22931 -10.99478 -10.93580 -10.71889 -9.96387 -9.66826 -8.97705 -8.57543 -8.39553 -8.15262 -7.41570 -7.11047 -4.67913 0.82278 1.23638 2.43617 2.74028 2.82018 2.87381 2.89440 2.93919 3.23732 3.63854 3.93479 3.94052 4.42733 4.47136 4.98932 5.02065 5.27267 5.37002 5.42051 5.80112 5.86962 6.06712 6.17259 6.25604 6.33986 6.43826 6.54540 6.58676 6.67092 6.73848 6.76090 6.97179 6.98901 7.17542 7.51527 7.56253 7.64037 7.72806 8.17246 8.36791 8.47593 9.45315 9.73635 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031437 B = 0.004264 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.455546 B = 6565.029655 C = 7372.156139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.013 3.987 3 N -0.434 5.434 4 C -0.019 4.019 5 C -0.009 4.009 6 C -0.083 4.083 7 C -0.126 4.126 8 C -0.078 4.078 9 C -0.071 4.071 10 C 0.266 3.734 11 N -0.426 5.426 12 C 0.148 3.852 13 F -0.107 7.107 14 C -0.117 4.117 15 C -0.144 4.144 16 C 0.076 3.924 17 C -0.421 4.421 18 H 0.092 0.908 19 C 0.071 3.929 20 N -0.770 5.770 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.256 1.256 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 3.102 1.483 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 N -0.142 5.142 4 C -0.152 4.152 5 C -0.011 4.011 6 C -0.103 4.103 7 C -0.144 4.144 8 C -0.099 4.099 9 C -0.075 4.075 10 C -0.049 4.049 11 N -0.101 5.101 12 C 0.125 3.875 13 F -0.085 7.085 14 C -0.138 4.138 15 C -0.169 4.169 16 C 0.071 3.929 17 C -0.450 4.450 18 H 0.110 0.890 19 C -0.151 4.151 20 N -0.393 5.393 21 Si 0.739 3.261 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.179 1.179 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.146 0.854 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.729 5.228 1.330 7.173 hybrid contribution 0.361 -2.038 0.026 2.070 sum 5.089 3.189 1.357 6.158 Atomic orbital electron populations 1.20272 0.90881 1.01372 1.00520 1.21027 0.95261 0.87791 1.09341 1.66897 1.08216 1.30424 1.08651 1.18446 0.89368 0.89774 1.17622 1.18739 0.92644 0.91100 0.98584 1.21323 0.92613 0.98527 0.97844 1.20889 1.00091 0.91441 1.01973 1.20840 0.90266 0.99288 0.99513 1.15954 0.92781 0.85715 1.13061 1.25484 0.93236 0.92847 0.93375 1.81172 1.08014 1.11324 1.09620 1.17695 0.77897 0.91648 1.00265 1.91589 1.27400 1.96927 1.92537 1.21215 0.98491 0.93198 1.00880 1.21286 0.94627 0.96646 1.04322 1.18473 0.92635 0.93199 0.88598 1.19795 1.01689 0.91796 1.31677 0.89037 1.26141 0.94165 1.02295 0.92480 1.69775 1.16650 1.32721 1.20129 0.86150 0.79704 0.79730 0.80534 1.19050 1.19665 1.17942 0.93198 0.92956 0.91449 0.84461 0.84879 0.84984 0.87847 0.85449 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 9.58 36.01 0.34 -1.14 16 2 C 0.01 0.31 6.86 -81.81 -0.56 -0.25 16 3 N -0.43 -10.34 8.20 -5.40 -0.04 -10.38 16 4 C -0.02 -0.42 6.74 -82.75 -0.56 -0.98 16 5 C -0.01 -0.16 5.88 -104.87 -0.62 -0.78 16 6 C -0.08 -1.16 9.41 -39.11 -0.37 -1.53 16 7 C -0.13 -1.38 10.01 -39.70 -0.40 -1.78 16 8 C -0.08 -0.91 9.75 -39.08 -0.38 -1.29 16 9 C -0.07 -1.06 5.73 -106.87 -0.61 -1.67 16 10 C 0.27 4.25 14.97 -22.47 -0.34 3.91 16 11 N -0.43 -7.39 18.54 41.84 0.78 -6.61 16 12 C 0.15 2.68 7.26 -38.51 -0.28 2.40 16 13 F -0.11 -2.22 14.83 2.25 0.03 -2.18 16 14 C -0.12 -2.49 9.38 -39.55 -0.37 -2.86 16 15 C -0.14 -3.38 8.73 -39.01 -0.34 -3.72 16 16 C 0.08 1.85 5.58 -106.64 -0.59 1.25 16 17 C -0.42 -9.80 8.14 -37.85 -0.31 -10.11 16 18 H 0.09 2.01 6.86 -52.49 -0.36 1.65 16 19 C 0.07 1.55 5.18 -17.33 -0.09 1.46 16 20 N -0.77 -17.46 10.96 55.55 0.61 -16.85 16 21 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 22 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 23 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 24 H -0.26 -4.54 7.11 56.52 0.40 -4.13 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.31 6.76 -51.93 -0.35 0.96 16 28 H 0.14 1.70 6.13 -52.49 -0.32 1.37 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.10 1.82 6.14 -52.49 -0.32 1.49 16 32 H 0.13 2.99 6.26 -52.49 -0.33 2.66 16 33 H 0.29 5.88 8.30 -40.82 -0.34 5.54 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -26.89 299.47 -7.12 -34.01 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.51 Total: 3.32 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -5.47 Total: -17.08 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 1.34 Total: -33.84 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.18 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.89 -7.12 -34.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245069037.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.926 kcal (2) G-P(sol) polarization free energy of solvation -26.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds