Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39461 * 120.13745 * 2 1 4 4 C 1.47748 * 120.09115 * 0.02626 * 3 2 1 5 5 O 1.21469 * 119.99703 * 353.81597 * 4 3 2 6 6 O 1.34709 * 120.00076 * 173.82438 * 4 3 2 7 7 C 1.39668 * 119.81873 * 179.75274 * 3 2 1 8 8 C 1.38041 * 120.09052 * 0.24514 * 7 3 2 9 9 C 1.38128 * 120.27852 * 0.02562 * 8 7 3 10 10 C 1.39046 * 120.14037 * 180.27923 * 2 1 3 11 11 C 1.48426 * 120.04359 * 0.02562 * 10 2 1 12 12 C 1.39716 * 119.99798 * 303.12635 * 11 10 2 13 13 C 1.38394 * 120.37729 * 180.02562 * 12 11 10 14 14 C 1.37712 * 120.38013 * 359.97438 * 13 12 11 15 15 C 1.40754 * 119.98936 * 0.02562 * 14 13 12 16 16 C 1.41424 * 120.18802 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99997 * 146.08807 * 16 15 14 18 18 C 1.39931 * 120.00170 * 326.08267 * 16 15 14 19 19 N 1.30836 * 119.99589 * 2.21244 * 18 16 15 20 20 Si 1.86790 * 120.00125 * 182.21054 * 18 16 15 21 21 H 1.48502 * 109.47198 * 60.00253 * 20 18 16 22 22 H 1.48498 * 109.47113 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47119 * 300.00090 * 20 18 16 24 24 C 1.38723 * 119.99371 * 122.85804 * 11 10 2 25 25 H 1.08999 * 109.47029 * 82.97141 * 1 2 3 26 26 H 1.09004 * 109.46700 * 202.96911 * 1 2 3 27 27 H 1.08999 * 109.46717 * 322.96875 * 1 2 3 28 28 H 0.96697 * 116.99417 * 179.97438 * 6 4 3 29 29 H 1.07996 * 119.95375 * 180.23771 * 7 3 2 30 30 H 1.07995 * 119.86537 * 179.97438 * 8 7 3 31 31 H 1.08003 * 119.91120 * 179.97438 * 9 8 7 32 32 H 1.07998 * 119.81134 * 359.97438 * 12 11 10 33 33 H 1.08003 * 119.81084 * 180.02562 * 13 12 11 34 34 H 1.08005 * 120.00902 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99242 * 179.97438 * 19 18 16 36 36 H 1.07996 * 120.19136 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2061 0.0000 4 6 1.4736 2.4886 0.0006 5 8 0.2642 2.4964 -0.1123 6 8 2.1459 3.6491 0.1261 7 6 3.6039 1.1983 0.0052 8 6 4.2893 0.0001 0.0053 9 6 3.5998 -1.1967 -0.0004 10 6 2.2052 -1.2024 -0.0059 11 6 1.4672 -2.4902 -0.0127 12 6 0.5458 -2.7727 0.9988 13 6 -0.1463 -3.9711 1.0004 14 6 0.0650 -4.8987 0.0047 15 6 0.9897 -4.6304 -1.0220 16 6 1.2103 -5.5802 -2.0463 17 1 1.4350 -5.2499 -3.0498 18 6 1.1377 -6.9480 -1.7598 19 7 0.8232 -7.3479 -0.5544 20 14 1.4899 -8.2026 -3.0981 21 1 2.8744 -8.0145 -3.6010 22 1 1.3463 -9.5723 -2.5426 23 1 0.5283 -8.0185 -4.2146 24 6 1.6884 -3.4109 -1.0266 25 1 -0.3633 0.1257 -1.0199 26 1 -0.3633 -0.9462 0.4011 27 1 -0.3633 0.8204 0.6189 28 1 1.6227 4.4623 0.1206 29 1 4.1483 2.1310 0.0091 30 1 5.3693 -0.0016 0.0089 31 1 4.1420 -2.1307 -0.0007 32 1 0.3732 -2.0520 1.7845 33 1 -0.8568 -4.1798 1.7866 34 1 -0.4787 -5.8319 0.0116 35 1 0.7725 -8.2961 -0.3559 36 1 2.3970 -3.1939 -1.8121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245299443.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -53.536377 kcal Electronic energy + Delta-G solvation = -20783.410497 eV Core-core repulsion = 17582.604850 eV Total energy + Delta-G solvation = -3200.805647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50880 -38.92505 -37.19080 -36.16516 -33.88482 -32.44552 -31.76955 -29.88577 -28.47313 -26.77981 -25.27296 -24.19028 -22.34260 -20.94263 -20.41103 -20.10644 -18.05813 -17.42148 -16.46009 -15.73019 -15.51483 -15.38309 -15.14802 -14.62789 -14.22964 -13.60611 -13.52736 -13.02995 -12.88940 -12.70605 -12.26190 -12.02219 -11.94517 -11.65826 -11.59350 -11.49309 -11.25101 -11.01529 -10.97062 -10.60702 -10.34419 -10.04483 -9.67962 -9.58204 -9.20534 -8.80978 -8.49467 -7.50337 -7.16070 -6.65097 -4.44035 0.85460 1.47687 2.57331 2.76556 2.87934 3.05776 3.07167 3.09594 3.18336 3.93006 3.97211 4.64123 4.92730 5.02033 5.14430 5.30556 5.41994 5.55159 5.68525 5.95643 6.03762 6.10415 6.17662 6.25279 6.35280 6.36369 6.44790 6.61326 6.72232 6.83487 6.84847 6.96750 7.09495 7.20023 7.29750 7.52044 7.75473 7.90344 7.97933 8.01382 8.23073 8.59848 8.88272 8.90468 10.26590 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.003929 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.966215 B = 7125.206511 C = 7519.602445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.006 4.006 3 C -0.141 4.141 4 C 0.526 3.474 5 O -0.509 6.509 6 O -0.517 6.517 7 C -0.074 4.074 8 C -0.143 4.143 9 C -0.070 4.070 10 C -0.029 4.029 11 C -0.047 4.047 12 C -0.208 4.208 13 C -0.113 4.113 14 C -0.144 4.144 15 C 0.104 3.896 16 C -0.466 4.466 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.813 5.813 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.190 4.190 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.409 0.591 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.278 0.722 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 12.781 1.669 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.007 4.007 3 C -0.143 4.143 4 C 0.371 3.629 5 O -0.398 6.398 6 O -0.328 6.328 7 C -0.092 4.092 8 C -0.161 4.161 9 C -0.088 4.088 10 C -0.029 4.029 11 C -0.048 4.048 12 C -0.227 4.227 13 C -0.131 4.131 14 C -0.163 4.163 15 C 0.102 3.898 16 C -0.497 4.497 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.440 5.440 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.210 4.210 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.267 0.733 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.933 12.189 1.768 12.929 hybrid contribution 0.016 -0.084 -0.529 0.536 sum 3.949 12.105 1.239 12.793 Atomic orbital electron populations 1.21354 0.89899 1.04547 1.03293 1.20128 0.97006 0.90275 0.93258 1.18757 0.93573 0.89423 1.12504 1.21019 0.85436 0.84158 0.72242 1.90854 1.15306 1.87553 1.46130 1.84573 1.45486 1.17137 1.85635 1.21295 0.92505 0.98689 0.96707 1.21017 1.00015 0.91998 1.03049 1.21627 0.93618 0.98471 0.95131 1.18989 0.92751 0.92768 0.98354 1.18173 0.97930 0.91505 0.97151 1.20384 1.03290 0.98488 1.00584 1.20705 0.99530 0.94361 0.98545 1.21669 0.99212 0.99309 0.96124 1.17575 0.88830 0.90641 0.92789 1.19486 1.43277 0.90342 0.96627 0.90692 1.25843 0.92836 0.99580 0.96097 1.69741 1.36979 1.17317 1.19965 0.86266 0.79883 0.78829 0.81076 1.19120 1.20417 1.19045 1.21147 1.03621 0.96572 0.99622 0.90925 0.89394 0.89922 0.73254 0.85101 0.85475 0.85084 0.89012 0.89017 0.85389 0.91059 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.34 36.01 0.30 -2.04 16 2 C -0.01 -0.11 5.92 -103.87 -0.61 -0.72 16 3 C -0.14 -2.15 5.87 -105.02 -0.62 -2.76 16 4 C 0.53 7.34 8.20 34.62 0.28 7.62 16 5 O -0.51 -8.20 14.13 -19.24 -0.27 -8.47 16 6 O -0.52 -5.21 12.69 -40.52 -0.51 -5.72 16 7 C -0.07 -0.96 9.61 -39.12 -0.38 -1.34 16 8 C -0.14 -1.87 10.02 -39.69 -0.40 -2.27 16 9 C -0.07 -1.12 9.62 -39.17 -0.38 -1.50 16 10 C -0.03 -0.53 5.38 -104.95 -0.56 -1.09 16 11 C -0.05 -1.02 4.85 -104.97 -0.51 -1.52 16 12 C -0.21 -4.45 7.53 -38.97 -0.29 -4.75 16 13 C -0.11 -2.55 10.01 -39.72 -0.40 -2.95 16 14 C -0.14 -3.63 8.66 -38.82 -0.34 -3.96 16 15 C 0.10 2.68 5.55 -106.86 -0.59 2.09 16 16 C -0.47 -12.15 9.05 -37.74 -0.34 -12.50 16 17 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 18 C 0.07 1.77 5.41 -17.34 -0.09 1.68 16 19 N -0.81 -20.78 10.62 55.55 0.59 -20.19 16 20 Si 0.91 18.69 29.56 -169.99 -5.02 13.66 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 C -0.19 -4.48 9.37 -38.53 -0.36 -4.84 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.09 1.60 4.50 -51.93 -0.23 1.36 16 27 H 0.08 1.39 5.89 -51.93 -0.31 1.08 16 28 H 0.41 2.17 9.11 45.56 0.42 2.59 16 29 H 0.13 1.39 7.61 -52.49 -0.40 0.99 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.09 1.79 7.46 -52.49 -0.39 1.40 16 33 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.13 3.37 6.14 -52.48 -0.32 3.05 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -28.70 308.90 -8.75 -37.45 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -2.90 Total: 9.46 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -5.29 Total: -30.85 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.59 Total: -20.19 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.79 Total: -14.19 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.70 -8.75 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245299443.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.083 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds