Wall clock time and date at job start Tue Mar 31 2020 05:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86803 * 120.00410 * 2 1 4 4 H 1.48496 * 109.47097 * 275.41729 * 3 2 1 5 5 H 1.48506 * 109.46886 * 35.41232 * 3 2 1 6 6 H 1.48492 * 109.46992 * 155.41193 * 3 2 1 7 7 C 1.39879 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99907 * 341.75796 * 7 2 1 9 9 C 1.40877 * 119.99855 * 161.75881 * 7 2 1 10 10 C 1.40997 * 120.12001 * 330.02359 * 9 7 2 11 11 C 1.36086 * 119.91555 * 179.97438 * 10 9 7 12 12 C 1.40220 * 120.16473 * 0.02562 * 11 10 9 13 13 C 1.47609 * 119.87862 * 179.97438 * 12 11 10 14 14 C 1.36381 * 126.72654 * 130.00533 * 13 12 11 15 15 N 1.36009 * 109.73778 * 180.02562 * 14 13 12 16 16 H 0.97006 * 124.84918 * 180.02562 * 15 14 13 17 17 C 1.37747 * 110.30163 * 359.97438 * 15 14 13 18 18 C 1.38895 * 134.20499 * 180.02562 * 17 15 14 19 19 N 1.31770 * 120.28704 * 179.23541 * 18 17 15 20 20 C 1.32233 * 122.53617 * 0.64663 * 19 18 17 21 21 C 1.36794 * 121.25167 * 359.60488 * 20 19 18 22 22 C 1.39531 * 118.71598 * 359.97231 * 21 20 19 23 23 C 1.39993 * 120.23645 * 359.95568 * 12 11 10 24 24 C 1.36427 * 120.08341 * 0.04115 * 23 12 11 25 25 F 1.35105 * 120.07731 * 179.97438 * 24 23 12 26 26 H 0.97006 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.04040 * 359.70399 * 10 9 7 28 28 H 1.08000 * 119.91675 * 179.97438 * 11 10 9 29 29 H 1.07997 * 125.13496 * 0.03502 * 14 13 12 30 30 H 1.08000 * 119.85941 * 0.02562 * 18 17 15 31 31 H 1.08000 * 119.37528 * 179.57661 * 20 19 18 32 32 H 1.07994 * 120.64247 * 180.02562 * 21 20 19 33 33 H 1.08001 * 119.95143 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3762 2.1124 -1.3938 5 1 1.5025 2.6170 0.8113 6 1 3.5931 1.4097 0.5825 7 6 2.0083 -1.2114 -0.0005 8 1 1.5090 -2.1233 0.2918 9 6 3.3640 -1.2420 -0.3825 10 6 3.8567 -0.3091 -1.3179 11 6 5.1672 -0.3421 -1.6835 12 6 6.0284 -1.3017 -1.1326 13 6 7.4486 -1.3321 -1.5340 14 6 8.5301 -1.3689 -0.7040 15 7 9.6736 -1.3878 -1.4401 16 1 10.5702 -1.4147 -1.0708 17 6 9.3767 -1.3644 -2.7850 18 6 10.1399 -1.3694 -3.9455 19 7 9.5545 -1.3561 -5.1259 20 6 8.2401 -1.3251 -5.2677 21 6 7.4092 -1.3130 -4.1811 22 6 7.9737 -1.3347 -2.9052 23 6 5.5464 -2.2308 -0.2029 24 6 4.2345 -2.2067 0.1706 25 9 3.7692 -3.1037 1.0674 26 1 -0.4850 0.8401 0.0004 27 1 3.1940 0.4278 -1.7471 28 1 5.5445 0.3722 -2.4003 29 1 8.4854 -1.3813 0.3750 30 1 11.2175 -1.3972 -3.8802 31 1 7.8145 -1.3085 -6.2602 32 1 6.3371 -1.2880 -4.3082 33 1 6.2139 -2.9677 0.2188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245394516.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:55 Heat of formation + Delta-G solvation = 34.772643 kcal Electronic energy + Delta-G solvation = -20471.820537 eV Core-core repulsion = 17183.676703 eV Total energy + Delta-G solvation = -3288.143835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.43564 -41.33703 -38.06430 -37.50768 -34.04764 -32.47847 -30.98379 -29.84612 -29.47917 -28.77368 -25.14417 -23.49396 -22.42157 -22.07625 -20.93570 -19.51755 -18.21050 -17.63864 -16.65149 -15.98120 -15.59457 -15.22966 -14.93589 -14.60344 -14.48391 -14.24159 -14.07063 -13.86224 -13.37679 -12.84034 -12.61736 -12.39638 -12.22457 -12.03591 -11.64602 -11.38438 -11.11740 -10.91716 -10.38288 -10.10304 -9.87578 -9.81852 -9.49047 -9.29343 -8.51514 -8.08050 -7.77289 -7.23693 -7.16059 -4.61971 1.08453 1.60678 2.13583 2.47016 2.91721 3.03615 3.12085 3.14066 3.21940 3.83250 4.06568 4.29084 4.59418 4.83747 4.92713 5.05230 5.14811 5.37036 5.55507 5.66254 5.76000 5.79805 5.89223 5.99978 6.17077 6.36668 6.42814 6.64684 6.69661 6.78263 6.92836 7.04601 7.25427 7.36243 7.49816 7.56709 7.65330 7.85434 8.14947 8.15320 8.42335 8.55089 9.84429 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.004745 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.924411 B = 5899.809578 C = 6387.063348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.241 1.241 7 C -0.425 4.425 8 H 0.097 0.903 9 C 0.070 3.930 10 C -0.225 4.225 11 C -0.056 4.056 12 C -0.146 4.146 13 C -0.079 4.079 14 C 0.042 3.958 15 N -0.582 5.582 16 H 0.415 0.585 17 C 0.034 3.966 18 C 0.102 3.898 19 N -0.473 5.473 20 C 0.041 3.959 21 C -0.108 4.108 22 C -0.067 4.067 23 C -0.091 4.091 24 C -0.013 4.013 25 F -0.158 7.158 26 H 0.290 0.710 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.174 0.826 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.598 0.803 -2.971 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.452 4.452 8 H 0.115 0.885 9 C 0.066 3.934 10 C -0.244 4.244 11 C -0.075 4.075 12 C -0.148 4.148 13 C -0.085 4.085 14 C -0.086 4.086 15 N -0.185 5.185 16 H 0.251 0.749 17 C -0.076 4.076 18 C -0.067 4.067 19 N -0.182 5.182 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.078 4.078 23 C -0.110 4.110 24 C -0.033 4.033 25 F -0.137 7.137 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.191 0.809 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.807 0.838 -3.648 15.273 hybrid contribution -0.097 0.525 1.136 1.255 sum 14.710 1.363 -2.513 14.985 Atomic orbital electron populations 1.69717 1.08220 1.30836 1.32558 1.26256 0.94820 1.02000 0.90744 0.86255 0.81437 0.79199 0.79203 1.19201 1.21447 1.16403 1.19459 0.92962 0.96590 1.36214 0.88513 1.17757 0.93113 0.91278 0.91267 1.20507 0.95757 1.04626 1.03529 1.20402 0.92982 0.96374 0.97712 1.17039 0.89905 1.01952 1.05875 1.18932 0.92456 1.08008 0.89123 1.22121 0.84000 1.05324 0.97145 1.41390 1.08529 1.64751 1.03797 0.74860 1.19362 0.95633 1.06844 0.85734 1.21691 0.99008 1.00918 0.85042 1.67494 1.13154 1.12643 1.24885 1.22014 0.88497 1.01609 0.98739 1.21331 1.01561 0.98966 0.90997 1.19441 0.91753 1.02618 0.94004 1.20331 0.93699 0.98693 0.98302 1.17281 0.92213 0.96526 0.97318 1.91319 1.89629 1.66474 1.66289 0.89950 0.87361 0.88292 0.80913 0.83462 0.83132 0.84711 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 13.93 55.54 0.77 -19.43 16 2 C 0.08 2.09 5.40 -17.33 -0.09 2.00 16 3 Si 0.91 19.75 24.51 -169.99 -4.17 15.59 16 4 H -0.27 -5.52 6.70 56.52 0.38 -5.14 16 5 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.24 -5.33 6.87 56.52 0.39 -4.95 16 7 C -0.43 -11.26 9.23 -37.97 -0.35 -11.61 16 8 H 0.10 2.74 7.97 -52.49 -0.42 2.32 16 9 C 0.07 1.73 5.11 -106.72 -0.55 1.18 16 10 C -0.22 -5.11 7.08 -39.31 -0.28 -5.39 16 11 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 12 C -0.15 -2.86 5.81 -104.67 -0.61 -3.47 16 13 C -0.08 -1.32 5.73 -103.27 -0.59 -1.91 16 14 C 0.04 0.56 11.72 -16.37 -0.19 0.36 16 15 N -0.58 -6.52 6.01 -10.35 -0.06 -6.58 16 16 H 0.41 2.98 8.96 -40.82 -0.37 2.61 16 17 C 0.03 0.47 7.31 -83.98 -0.61 -0.14 16 18 C 0.10 1.29 11.25 -17.34 -0.19 1.10 16 19 N -0.47 -6.76 10.32 -13.37 -0.14 -6.90 16 20 C 0.04 0.57 11.12 -17.90 -0.20 0.37 16 21 C -0.11 -1.64 10.12 -39.62 -0.40 -2.04 16 22 C -0.07 -1.07 6.39 -104.96 -0.67 -1.74 16 23 C -0.09 -1.87 9.61 -39.58 -0.38 -2.25 16 24 C -0.01 -0.32 7.25 -39.10 -0.28 -0.60 16 25 F -0.16 -3.79 16.75 2.25 0.04 -3.75 16 26 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 27 H 0.11 2.43 4.75 -52.48 -0.25 2.18 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -28.83 293.34 -7.66 -36.49 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.74 Total: 5.84 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -5.79 Total: -25.68 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.57 Total: -32.90 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.17 Total: 15.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.83 -7.66 -36.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245394516.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.261 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds