Wall clock time and date at job start Tue Mar 31 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86808 * 119.99895 * 2 1 4 4 H 1.48502 * 109.46952 * 239.99877 * 3 2 1 5 5 H 1.48496 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46853 * 120.00082 * 3 2 1 7 7 C 1.39878 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99650 * 197.80953 * 7 2 1 9 9 C 1.41334 * 120.00041 * 17.80916 * 7 2 1 10 10 C 1.40868 * 120.15027 * 204.46065 * 9 7 2 11 11 C 1.37597 * 120.02958 * 179.97438 * 10 9 7 12 12 C 1.38711 * 120.35199 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.84383 * 179.97438 * 12 11 10 14 14 C 1.40082 * 120.30790 * 359.97438 * 12 11 10 15 15 C 1.48258 * 120.01600 * 180.02562 * 14 12 11 16 16 C 1.35742 * 126.66289 * 245.02312 * 15 14 12 17 17 N 1.36415 * 109.78249 * 179.73124 * 16 15 14 18 18 H 0.97006 * 124.90829 * 180.22536 * 17 16 15 19 19 C 1.37632 * 110.17642 * 0.23599 * 17 16 15 20 20 C 1.38913 * 134.26985 * 180.02562 * 19 17 16 21 21 N 1.31743 * 120.28117 * 180.02562 * 20 19 17 22 22 C 1.32276 * 122.54299 * 359.96355 * 21 20 19 23 23 C 1.36714 * 121.27624 * 0.03677 * 22 21 20 24 24 C 1.39626 * 118.72316 * 359.97438 * 23 22 21 25 25 C 1.38707 * 119.96279 * 0.27588 * 14 12 11 26 26 H 0.97004 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99049 * 359.95228 * 10 9 7 28 28 H 1.07999 * 119.82008 * 179.97438 * 11 10 9 29 29 H 1.07995 * 125.10530 * 359.97438 * 16 15 14 30 30 H 1.08000 * 119.86473 * 359.97438 * 20 19 17 31 31 H 1.08001 * 119.36248 * 180.02562 * 22 21 20 32 32 H 1.08005 * 120.63941 * 180.02562 * 23 22 21 33 33 H 1.08000 * 120.17715 * 179.72692 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0081 -1.2114 -0.0005 8 1 3.0493 -1.2338 0.2855 9 6 1.3523 -2.4059 -0.3754 10 6 1.8276 -3.6489 0.0864 11 6 1.1868 -4.8103 -0.2797 12 6 0.0714 -4.7658 -1.1031 13 9 -0.5494 -5.9124 -1.4566 14 6 -0.4142 -3.5375 -1.5698 15 6 -1.6072 -3.4974 -2.4491 16 6 -1.6472 -3.0884 -3.7428 17 7 -2.9192 -3.1996 -4.2231 18 1 -3.1943 -2.9696 -5.1244 19 6 -3.7556 -3.6849 -3.2438 20 6 -5.1108 -3.9847 -3.1871 21 7 -5.6426 -4.4485 -2.0746 22 6 -4.9328 -4.6502 -0.9767 23 6 -3.5925 -4.3834 -0.9391 24 6 -2.9741 -3.8894 -2.0894 25 6 0.2249 -2.3592 -1.2130 26 1 -0.4850 0.8401 -0.0004 27 1 2.6955 -3.6906 0.7278 28 1 1.5544 -5.7615 0.0760 29 1 -0.7987 -2.7324 -4.3081 30 1 -5.7313 -3.8363 -4.0585 31 1 -5.4216 -5.0329 -0.0930 32 1 -3.0228 -4.5523 -0.0372 33 1 -0.1440 -1.4107 -1.5744 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245396384.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:27 Heat of formation + Delta-G solvation = 34.307978 kcal Electronic energy + Delta-G solvation = -20812.177440 eV Core-core repulsion = 17524.013456 eV Total energy + Delta-G solvation = -3288.163984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.43263 -41.16530 -37.84559 -37.22721 -33.75099 -32.46041 -30.63274 -29.64809 -29.41080 -27.76612 -25.10320 -23.34045 -22.17012 -22.08853 -20.97195 -19.19862 -18.12713 -17.09910 -16.38920 -16.02514 -15.43856 -15.40626 -14.71304 -14.44678 -14.29112 -14.20492 -13.87364 -13.69447 -12.92735 -12.47364 -12.43654 -12.10479 -11.97171 -11.90630 -11.46847 -11.22327 -11.14217 -10.94538 -10.36098 -10.10087 -9.67793 -9.59386 -9.34474 -9.20001 -8.33610 -7.86971 -7.44371 -7.17532 -6.88011 -4.46315 1.27428 1.77938 2.44462 2.70752 3.00442 3.01240 3.04651 3.15145 3.27490 3.83701 4.25100 4.40676 4.74182 5.00570 5.10113 5.20049 5.41092 5.53168 5.72734 5.77895 5.91539 6.01627 6.07720 6.16151 6.53001 6.61447 6.82112 6.85927 6.95156 7.01498 7.09719 7.25073 7.36015 7.60439 7.68449 7.75726 7.88987 8.09148 8.30731 8.43478 8.72573 8.76625 10.05569 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.005585 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.854906 B = 5012.461108 C = 5754.059289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.101 3.899 10 C -0.203 4.203 11 C -0.120 4.120 12 C -0.029 4.029 13 F -0.168 7.168 14 C -0.037 4.037 15 C -0.095 4.095 16 C 0.060 3.940 17 N -0.584 5.584 18 H 0.415 0.585 19 C 0.036 3.964 20 C 0.100 3.900 21 N -0.473 5.473 22 C 0.041 3.959 23 C -0.101 4.101 24 C -0.055 4.055 25 C -0.123 4.123 26 H 0.283 0.717 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.176 0.824 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 -2.016 -6.272 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.222 4.222 11 C -0.139 4.139 12 C -0.049 4.049 13 F -0.148 7.148 14 C -0.039 4.039 15 C -0.102 4.102 16 C -0.067 4.067 17 N -0.187 5.187 18 H 0.252 0.748 19 C -0.074 4.074 20 C -0.068 4.068 21 N -0.182 5.182 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.067 4.067 25 C -0.143 4.143 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.193 0.807 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.489 -2.070 -6.271 8.588 hybrid contribution 1.107 0.929 -0.348 1.487 sum -4.382 -1.141 -6.620 8.020 Atomic orbital electron populations 1.69824 1.07537 1.29637 1.34256 1.25928 0.94743 1.01428 0.92218 0.86350 0.80153 0.80103 0.80098 1.18737 1.20304 1.18890 1.19522 0.98223 0.91037 1.39884 0.90113 1.17566 0.91225 0.92253 0.89093 1.20890 1.03457 0.91991 1.05903 1.20455 0.95794 0.98200 0.99435 1.17294 0.98415 0.80347 1.08830 1.91292 1.82827 1.48933 1.91723 1.17798 0.94093 0.92560 0.99449 1.18948 0.91525 1.06439 0.93306 1.21997 0.86564 1.03164 0.95008 1.41453 1.07078 1.57488 1.12717 0.74804 1.19344 0.93875 1.03954 0.90228 1.21650 0.88709 0.99542 0.96865 1.67478 1.39012 1.12538 0.99162 1.21958 0.91125 1.01592 0.96206 1.21291 0.95320 0.97543 0.97998 1.19339 0.93306 1.00878 0.93176 1.21327 0.98003 0.95428 0.99524 0.90572 0.87988 0.88037 0.80734 0.83453 0.83173 0.84972 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 10.96 55.54 0.61 -18.78 16 2 C 0.08 1.78 5.13 -17.35 -0.09 1.69 16 3 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.34 9.04 -37.79 -0.34 -11.68 16 8 H 0.08 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.10 2.53 5.57 -106.86 -0.60 1.93 16 10 C -0.20 -4.69 9.78 -38.82 -0.38 -5.07 16 11 C -0.12 -2.66 9.99 -39.64 -0.40 -3.05 16 12 C -0.03 -0.67 7.30 -38.72 -0.28 -0.95 16 13 F -0.17 -3.83 16.81 2.25 0.04 -3.79 16 14 C -0.04 -0.85 5.77 -104.91 -0.61 -1.46 16 15 C -0.10 -1.93 5.32 -103.26 -0.55 -2.48 16 16 C 0.06 0.98 11.79 -16.41 -0.19 0.78 16 17 N -0.58 -7.99 6.03 -10.41 -0.06 -8.05 16 18 H 0.42 3.84 8.96 -40.82 -0.37 3.48 16 19 C 0.04 0.58 7.32 -84.00 -0.61 -0.03 16 20 C 0.10 1.50 11.25 -17.34 -0.20 1.30 16 21 N -0.47 -7.77 10.32 -13.38 -0.14 -7.90 16 22 C 0.04 0.67 11.11 -17.91 -0.20 0.47 16 23 C -0.10 -1.87 10.12 -39.61 -0.40 -2.27 16 24 C -0.06 -1.08 6.43 -104.96 -0.67 -1.75 16 25 C -0.12 -3.01 8.41 -38.55 -0.32 -3.33 16 26 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 27 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 28 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.13 2.44 8.06 -52.48 -0.42 2.01 16 33 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 299.04 15.07 4.51 4.51 Total: -1.00 -28.84 299.04 -8.70 -37.54 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -2.78 Total: 9.78 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -5.84 Total: -25.90 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.41 Total: -34.73 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.84 -8.70 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245396384.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.845 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds