Wall clock time and date at job start Tue Mar 31 2020 05:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86796 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47147 * 274.50270 * 3 2 1 5 5 H 1.48507 * 109.47347 * 34.50274 * 3 2 1 6 6 H 1.48498 * 109.47149 * 154.50017 * 3 2 1 7 7 C 1.39867 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00120 * 162.07492 * 7 2 1 9 9 C 1.40925 * 120.00539 * 342.35183 * 7 2 1 10 10 C 1.41002 * 120.09095 * 334.34248 * 9 7 2 11 11 C 1.36127 * 119.89285 * 179.76114 * 10 9 7 12 12 C 1.40160 * 120.10115 * 0.53519 * 11 10 9 13 13 C 1.47553 * 119.90099 * 179.71548 * 12 11 10 14 14 C 1.36259 * 126.77951 * 130.00578 * 13 12 11 15 15 N 1.36161 * 109.68678 * 180.02562 * 14 13 12 16 16 H 0.97001 * 124.79786 * 179.97438 * 15 14 13 17 17 C 1.37757 * 110.41046 * 359.97438 * 15 14 13 18 18 N 1.32645 * 132.89808 * 180.02562 * 17 15 14 19 19 C 1.31629 * 121.73473 * 179.16431 * 18 17 15 20 20 C 1.38800 * 121.51303 * 0.72832 * 19 18 17 21 21 F 1.35094 * 120.35543 * 179.57220 * 20 19 18 22 22 C 1.38509 * 119.28715 * 359.55262 * 20 19 18 23 23 C 1.39441 * 118.04215 * 359.97438 * 22 20 19 24 24 C 1.40178 * 120.20219 * 359.69670 * 12 11 10 25 25 C 1.36122 * 120.09512 * 0.04098 * 24 12 11 26 26 H 0.96993 * 120.00321 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.05607 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.94740 * 180.27539 * 11 10 9 29 29 H 1.08006 * 125.15225 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.24461 * 180.25642 * 19 18 17 31 31 H 1.08002 * 120.97720 * 180.02562 * 22 20 19 32 32 H 1.07995 * 119.95219 * 180.02562 * 24 12 11 33 33 H 1.08001 * 120.04457 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3951 2.1014 -1.3957 5 1 1.4910 2.6234 0.7931 6 1 3.5847 1.4147 0.6027 7 6 2.0083 -1.2113 0.0005 8 1 3.0490 -1.2341 -0.2873 9 6 1.3536 -2.4029 0.3711 10 6 0.2338 -2.3577 1.2268 11 6 -0.3986 -3.5108 1.5782 12 6 0.0687 -4.7426 1.0998 13 6 -0.6163 -5.9903 1.4886 14 6 -1.0396 -6.9822 0.6557 15 7 -1.6279 -7.9718 1.3828 16 1 -2.0071 -8.7826 1.0091 17 6 -1.6087 -7.6587 2.7242 18 7 -2.0487 -8.2893 3.8050 19 6 -1.8975 -7.7841 5.0110 20 6 -1.2818 -6.5564 5.2114 21 9 -1.1467 -6.0560 6.4589 22 6 -0.8072 -5.8501 4.1186 23 6 -0.9714 -6.4122 2.8531 24 6 1.1845 -4.7928 0.2528 25 6 1.8197 -3.6443 -0.1081 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1243 -1.4093 1.5993 28 1 -1.2591 -3.4768 2.2300 29 1 -0.9263 -6.9829 -0.4184 30 1 -2.2677 -8.3341 5.8636 31 1 -0.3234 -4.8925 4.2431 32 1 1.5408 -5.7441 -0.1138 33 1 2.6791 -3.6839 -0.7610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245431702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:25 Heat of formation + Delta-G solvation = 37.418287 kcal Electronic energy + Delta-G solvation = -20198.178429 eV Core-core repulsion = 16910.149318 eV Total energy + Delta-G solvation = -3288.029111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.68767 -41.27031 -37.79295 -37.23318 -33.99849 -32.69360 -30.63719 -29.59587 -29.25702 -28.27006 -25.15240 -23.79926 -22.44250 -21.58518 -20.72126 -19.17635 -18.36207 -17.41655 -17.16539 -16.48095 -15.65745 -15.45282 -15.33136 -14.52306 -14.37005 -14.03464 -13.82253 -13.39330 -13.14291 -12.76095 -12.56755 -12.31711 -12.06287 -11.90151 -11.69402 -11.18283 -11.12779 -10.86471 -10.65331 -10.07704 -9.81788 -9.52266 -9.38432 -9.18727 -8.21708 -8.00077 -7.60851 -7.06072 -6.85093 -4.41761 1.01246 1.29503 2.43791 2.89997 2.92763 3.01820 3.07156 3.08124 3.31353 3.84932 3.88264 4.24192 4.52122 4.60398 4.89295 4.92285 5.15954 5.45394 5.60589 5.79504 5.89766 6.02088 6.16797 6.23778 6.31718 6.64674 6.73367 6.90645 6.96792 7.10557 7.18123 7.27416 7.41353 7.55702 7.84534 7.96989 7.99382 8.07067 8.20030 8.53921 8.78125 8.88747 10.05669 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.004079 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.048497 B = 6862.034117 C = 7651.601962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.169 4.169 11 C -0.075 4.075 12 C -0.173 4.173 13 C -0.056 4.056 14 C 0.034 3.966 15 N -0.576 5.576 16 H 0.416 0.584 17 C 0.269 3.731 18 N -0.479 5.479 19 C 0.107 3.893 20 C 0.004 3.996 21 F -0.137 7.137 22 C -0.050 4.050 23 C -0.117 4.117 24 C -0.067 4.067 25 C -0.230 4.230 26 H 0.283 0.717 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.179 0.821 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -9.690 3.909 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.188 4.188 11 C -0.094 4.094 12 C -0.175 4.175 13 C -0.062 4.062 14 C -0.091 4.091 15 N -0.182 5.182 16 H 0.253 0.747 17 C 0.036 3.964 18 N -0.191 5.191 19 C -0.060 4.060 20 C -0.020 4.020 21 F -0.116 7.116 22 C -0.077 4.077 23 C -0.125 4.125 24 C -0.085 4.085 25 C -0.249 4.249 26 H 0.094 0.906 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.196 0.804 30 H 0.183 0.817 31 H 0.166 0.834 32 H 0.106 0.894 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.679 -10.399 3.657 11.621 hybrid contribution 0.507 1.281 0.058 1.379 sum -3.172 -9.118 3.714 10.344 Atomic orbital electron populations 1.69853 1.07657 1.29525 1.33867 1.25956 0.94743 1.01515 0.92126 0.86299 0.80830 0.80506 0.79168 1.19471 1.19914 1.18289 1.19594 0.98252 0.91392 1.39088 0.90218 1.17687 0.90786 0.92047 0.87981 1.20948 0.99684 0.96874 1.01338 1.20423 0.97912 0.92224 0.98842 1.17356 1.01122 0.89303 1.09752 1.19130 1.02919 0.95749 0.88449 1.22098 1.00876 0.88902 0.97175 1.41243 1.53008 1.20873 1.03051 0.74652 1.18386 0.99824 0.92558 0.85677 1.66457 1.20961 1.34927 0.96783 1.22342 0.97563 0.92367 0.93727 1.18325 1.07140 0.96351 0.80157 1.91476 1.94530 1.87373 1.38199 1.21023 0.96809 1.00170 0.89700 1.19761 1.03205 0.95418 0.94134 1.20301 0.94846 0.96508 0.96860 1.20642 1.04266 0.92939 1.07071 0.90646 0.86583 0.89558 0.80427 0.81652 0.83426 0.89370 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.53 11.00 55.54 0.61 -18.92 16 2 C 0.08 1.82 5.12 -17.34 -0.09 1.73 16 3 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.56 9.01 -37.96 -0.34 -11.90 16 8 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 9 C 0.12 3.00 5.56 -106.79 -0.59 2.41 16 10 C -0.17 -4.22 8.61 -39.29 -0.34 -4.56 16 11 C -0.08 -1.70 9.69 -39.62 -0.38 -2.09 16 12 C -0.17 -3.65 5.81 -104.65 -0.61 -4.26 16 13 C -0.06 -1.01 5.74 -103.19 -0.59 -1.60 16 14 C 0.03 0.50 11.73 -16.34 -0.19 0.31 16 15 N -0.58 -7.62 6.01 -11.83 -0.07 -7.69 16 16 H 0.42 4.05 8.96 -40.82 -0.37 3.68 16 17 C 0.27 4.26 8.41 -155.46 -1.31 2.96 16 18 N -0.48 -7.21 10.38 -12.20 -0.13 -7.34 16 19 C 0.11 1.45 11.14 -17.43 -0.19 1.25 16 20 C 0.00 0.05 7.34 -39.27 -0.29 -0.23 16 21 F -0.14 -1.97 17.28 2.25 0.04 -1.93 16 22 C -0.05 -0.83 10.20 -39.03 -0.40 -1.22 16 23 C -0.12 -2.04 6.34 -104.94 -0.67 -2.71 16 24 C -0.07 -1.41 9.64 -39.61 -0.38 -1.79 16 25 C -0.23 -5.36 9.73 -39.30 -0.38 -5.74 16 26 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 27 H 0.12 3.00 6.22 -52.49 -0.33 2.68 16 28 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.15 2.42 8.06 -52.49 -0.42 1.99 16 32 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -27.71 299.41 -9.60 -37.32 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.78 Total: 8.63 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -6.76 Total: -27.45 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.41 Total: -33.94 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.71 -9.60 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245431702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.735 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds