Wall clock time and date at job start Tue Mar 31 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30767 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48508 * 109.46847 * 269.99699 * 3 2 1 5 5 H 1.48501 * 109.47222 * 29.99468 * 3 2 1 6 6 H 1.48505 * 109.47111 * 149.99852 * 3 2 1 7 7 C 1.39980 * 119.99484 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.41345 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.40762 * 119.75272 * 180.02562 * 9 7 2 11 11 C 1.38295 * 119.22362 * 179.97438 * 10 9 7 12 12 C 1.38670 * 118.71817 * 359.97438 * 11 10 9 13 13 C 1.40104 * 119.44669 * 359.97438 * 12 11 10 14 14 C 1.47736 * 119.62830 * 180.02562 * 13 12 11 15 15 C 1.35736 * 125.23785 * 180.02562 * 14 13 12 16 16 C 1.46103 * 106.94614 * 179.97438 * 15 14 13 17 17 C 1.39899 * 133.75680 * 180.02562 * 16 15 14 18 18 C 1.37722 * 119.62840 * 179.65724 * 17 16 15 19 19 F 1.35102 * 119.82399 * 180.32016 * 18 17 16 20 20 C 1.39075 * 120.35206 * 0.61954 * 18 17 16 21 21 C 1.37723 * 120.67794 * 359.40427 * 20 18 17 22 22 C 1.39126 * 119.98606 * 0.27635 * 21 20 18 23 23 N 1.37642 * 125.23513 * 0.02562 * 14 13 12 24 24 H 0.96994 * 125.11214 * 0.02562 * 23 14 13 25 25 N 1.32452 * 120.74198 * 0.28441 * 13 12 11 26 26 H 0.97001 * 120.00068 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.38939 * 359.97406 * 10 9 7 28 28 H 1.08006 * 120.64149 * 179.97438 * 11 10 9 29 29 H 1.07993 * 120.27403 * 179.97438 * 12 11 10 30 30 H 1.08007 * 126.52773 * 0.02562 * 15 14 13 31 31 H 1.07999 * 120.18477 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.66645 * 179.68790 * 20 18 17 33 33 H 1.08000 * 120.00758 * 180.30212 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0463 -1.4002 5 1 1.4391 2.6527 0.6999 6 1 3.5393 1.4401 0.7001 7 6 2.0075 -1.2123 0.0005 8 1 3.0875 -1.2124 0.0010 9 6 1.3007 -2.4364 0.0005 10 6 2.0097 -3.6524 0.0016 11 6 1.3072 -4.8436 0.0022 12 6 -0.0788 -4.7997 0.0021 13 6 -0.7286 -3.5585 0.0021 14 6 -2.2051 -3.5071 0.0027 15 6 -2.9492 -2.3719 0.0022 16 6 -4.3515 -2.7819 0.0024 17 6 -5.5638 -2.0835 0.0017 18 6 -6.7513 -2.7810 -0.0050 19 9 -7.9242 -2.1106 -0.0122 20 6 -6.7496 -4.1717 0.0020 21 6 -5.5642 -4.8729 0.0033 22 6 -4.3522 -4.1898 0.0035 23 7 -3.0378 -4.6030 0.0037 24 1 -2.7436 -5.5273 0.0046 25 7 -0.0342 -2.4307 -0.0035 26 1 -0.4850 0.8400 -0.0004 27 1 3.0896 -3.6551 0.0021 28 1 1.8280 -5.7898 0.0026 29 1 -0.6525 -5.7147 0.0021 30 1 -2.5758 -1.3584 0.0010 31 1 -5.5683 -1.0035 0.0004 32 1 -7.6874 -4.7074 0.0017 33 1 -5.5755 -5.9529 0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245574232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:20 Heat of formation + Delta-G solvation = 39.553532 kcal Electronic energy + Delta-G solvation = -20257.010928 eV Core-core repulsion = 16969.074408 eV Total energy + Delta-G solvation = -3287.936520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.57135 -40.83428 -38.23720 -36.27538 -33.74114 -31.85360 -31.00174 -30.45407 -28.66066 -27.92507 -25.81791 -23.36646 -21.92675 -21.63922 -20.85509 -19.69715 -17.93544 -17.44989 -16.82291 -15.99380 -15.34125 -15.32938 -14.87924 -14.54868 -14.27808 -14.07974 -13.85959 -13.40872 -12.89628 -12.72802 -12.58547 -12.40551 -12.20221 -11.78063 -11.34089 -11.16199 -10.97646 -10.90513 -10.65721 -10.61318 -10.11325 -9.62202 -9.45406 -8.61489 -8.11134 -7.80580 -7.60291 -7.05146 -6.54662 -4.66976 1.09984 1.62463 2.29742 2.78184 3.04339 3.06073 3.08617 3.34313 3.55440 3.86558 3.98026 4.50583 4.66642 4.81557 5.07611 5.19890 5.44371 5.64214 5.65921 5.74907 5.83457 6.05416 6.16595 6.23345 6.35467 6.41363 6.54320 6.56738 6.61410 6.91710 7.09559 7.12523 7.19954 7.38154 7.47511 7.55882 7.78113 7.90218 8.06995 8.50370 8.74674 9.84873 10.17274 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.004697 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.767201 B = 5960.033299 C = 7428.948780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.424 4.424 8 H 0.087 0.913 9 C 0.257 3.743 10 C -0.269 4.269 11 C -0.055 4.055 12 C -0.310 4.310 13 C 0.193 3.807 14 C 0.154 3.846 15 C -0.155 4.155 16 C -0.086 4.086 17 C -0.102 4.102 18 C 0.057 3.943 19 F -0.149 7.149 20 C -0.141 4.141 21 C -0.102 4.102 22 C 0.089 3.911 23 N -0.588 5.588 24 H 0.413 0.587 25 N -0.457 5.457 26 H 0.276 0.724 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -5.127 0.015 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.455 4.455 8 H 0.105 0.895 9 C 0.132 3.868 10 C -0.292 4.292 11 C -0.079 4.079 12 C -0.335 4.335 13 C 0.048 3.952 14 C 0.046 3.954 15 C -0.180 4.180 16 C -0.091 4.091 17 C -0.121 4.121 18 C 0.036 3.964 19 F -0.128 7.128 20 C -0.161 4.161 21 C -0.123 4.123 22 C -0.019 4.019 23 N -0.192 5.192 24 H 0.251 0.749 25 N -0.170 5.170 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.185 0.815 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.194 -4.227 0.013 9.220 hybrid contribution 0.791 -0.615 -0.004 1.002 sum -7.402 -4.843 0.009 8.846 Atomic orbital electron populations 1.70088 1.07182 1.28137 1.27579 1.26062 0.94979 1.01171 0.93582 0.86293 0.80442 0.80638 0.79316 1.19335 1.19976 1.18540 1.19641 0.94406 0.89241 1.42185 0.89527 1.18490 0.87431 0.92150 0.88746 1.21831 0.98970 0.93435 1.14970 1.20731 0.93573 0.96841 0.96711 1.21037 0.94906 0.96021 1.21494 1.18865 0.88817 0.90561 0.96971 1.18709 0.89671 0.85248 1.01744 1.22050 0.88005 0.99252 1.08666 1.19094 0.93657 0.91715 1.04655 1.20447 0.89508 1.00224 1.01964 1.17229 0.80775 0.89980 1.08392 1.91443 1.45989 1.80719 1.94665 1.20598 0.98257 0.92077 1.05124 1.19751 0.88775 0.99098 1.04682 1.18227 0.84887 0.93937 1.04884 1.41812 1.03422 1.08494 1.65458 0.74920 1.68699 1.07431 1.24400 1.16452 0.91311 0.87972 0.88282 0.89263 0.81537 0.84873 0.85046 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.66 11.46 55.55 0.64 -17.03 16 2 C 0.07 1.64 5.49 -17.35 -0.10 1.55 16 3 Si 0.91 17.72 29.56 -169.99 -5.02 12.69 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.42 -10.73 9.13 -37.75 -0.34 -11.07 16 8 H 0.09 2.04 7.85 -52.48 -0.41 1.63 16 9 C 0.26 6.67 6.55 -85.01 -0.56 6.11 16 10 C -0.27 -6.24 9.83 -38.61 -0.38 -6.62 16 11 C -0.05 -1.15 10.14 -39.40 -0.40 -1.55 16 12 C -0.31 -6.55 9.74 -38.72 -0.38 -6.93 16 13 C 0.19 4.49 6.75 -83.02 -0.56 3.93 16 14 C 0.15 3.15 6.87 -82.27 -0.57 2.59 16 15 C -0.15 -3.16 10.70 -37.32 -0.40 -3.56 16 16 C -0.09 -1.53 6.35 -105.16 -0.67 -2.19 16 17 C -0.10 -1.62 10.08 -39.15 -0.39 -2.02 16 18 C 0.06 0.84 7.28 -39.46 -0.29 0.55 16 19 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16 20 C -0.14 -1.82 9.99 -39.46 -0.39 -2.21 16 21 C -0.10 -1.34 10.06 -39.44 -0.40 -1.74 16 22 C 0.09 1.44 7.26 -83.90 -0.61 0.83 16 23 N -0.59 -9.77 5.98 -7.28 -0.04 -9.81 16 24 H 0.41 5.69 7.91 -40.82 -0.32 5.36 16 25 N -0.46 -11.87 7.49 -7.75 -0.06 -11.93 16 26 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 27 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.09 1.59 7.03 -52.49 -0.37 1.22 16 30 H 0.17 3.65 8.06 -52.48 -0.42 3.22 16 31 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -27.54 298.74 -9.15 -36.70 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -2.77 Total: 9.37 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -6.43 Total: -22.35 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.53 Total: -38.77 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.02 Total: 12.69 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.54 -9.15 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245574232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.250 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds