Wall clock time and date at job start Tue Mar 31 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48498 * 109.47097 * 269.99417 * 3 2 1 5 5 H 1.48497 * 109.47120 * 29.99667 * 3 2 1 6 6 H 1.48504 * 109.46973 * 149.99550 * 3 2 1 7 7 C 1.39983 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99550 * 180.02562 * 7 2 1 9 9 C 1.41340 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.40752 * 119.75359 * 179.97438 * 9 7 2 11 11 C 1.38297 * 119.22872 * 180.02562 * 10 9 7 12 12 C 1.38662 * 118.72142 * 359.97438 * 11 10 9 13 13 C 1.40127 * 119.44544 * 0.02562 * 12 11 10 14 14 C 1.47704 * 119.62838 * 179.97438 * 13 12 11 15 15 C 1.35739 * 125.24123 * 180.15037 * 14 13 12 16 16 C 1.46116 * 106.93774 * 180.26530 * 15 14 13 17 17 C 1.39880 * 133.76526 * 179.76903 * 16 15 14 18 18 C 1.36523 * 119.79979 * 179.97438 * 17 16 15 19 19 C 1.39091 * 120.51451 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.67593 * 180.02562 * 19 18 17 21 21 C 1.37966 * 120.64491 * 0.02562 * 19 18 17 22 22 C 1.39119 * 119.79961 * 359.97438 * 21 19 18 23 23 N 1.37666 * 133.22694 * 180.02562 * 22 21 19 24 24 H 0.97001 * 125.10585 * 359.92424 * 23 22 21 25 25 N 1.32462 * 120.73774 * 0.25055 * 13 12 11 26 26 H 0.96999 * 119.99349 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.38916 * 359.97438 * 10 9 7 28 28 H 1.08004 * 120.64348 * 179.97438 * 11 10 9 29 29 H 1.07997 * 120.27613 * 179.97438 * 12 11 10 30 30 H 1.07999 * 126.53044 * 359.97438 * 15 14 13 31 31 H 1.07999 * 120.09825 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.74008 * 179.97438 * 18 17 16 33 33 H 1.08005 * 120.10611 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4894 2.0463 -1.4001 5 1 1.4392 2.6526 0.7000 6 1 3.5393 1.4400 0.7002 7 6 2.0075 -1.2123 0.0005 8 1 3.0875 -1.2123 0.0010 9 6 1.3008 -2.4363 0.0005 10 6 2.0097 -3.6523 0.0005 11 6 1.3072 -4.8436 0.0000 12 6 -0.0787 -4.7998 0.0000 13 6 -0.7288 -3.5585 0.0000 14 6 -2.2049 -3.5072 -0.0005 15 6 -2.9492 -2.3721 -0.0035 16 6 -4.3515 -2.7825 0.0036 17 6 -5.5639 -2.0848 0.0085 18 6 -6.7428 -2.7731 0.0143 19 6 -6.7486 -4.1640 0.0148 20 9 -7.9251 -4.8280 0.0200 21 6 -5.5645 -4.8721 0.0099 22 6 -4.3515 -4.1909 0.0040 23 7 -3.0383 -4.6038 -0.0021 24 1 -2.7441 -5.5281 -0.0021 25 7 -0.0342 -2.4305 -0.0049 26 1 -0.4849 0.8401 -0.0004 27 1 3.0897 -3.6550 0.0001 28 1 1.8280 -5.7897 -0.0004 29 1 -0.6523 -5.7149 -0.0008 30 1 -2.5760 -1.3586 -0.0054 31 1 -5.5672 -1.0048 0.0078 32 1 -7.6783 -2.2334 0.0186 33 1 -5.5791 -5.9521 0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245587207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:22 Heat of formation + Delta-G solvation = 39.563127 kcal Electronic energy + Delta-G solvation = -20246.830169 eV Core-core repulsion = 16958.894065 eV Total energy + Delta-G solvation = -3287.936104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.72149 -40.84417 -38.23367 -36.33635 -33.74322 -31.84890 -30.81744 -30.48218 -29.16420 -27.58676 -25.81447 -23.31599 -22.04613 -21.62928 -20.80110 -19.69982 -18.02882 -17.65837 -16.52118 -15.79638 -15.45537 -15.34225 -15.01342 -14.64229 -14.23730 -14.06558 -14.04359 -13.57965 -12.95579 -12.87652 -12.50414 -12.39534 -12.06655 -11.46958 -11.34801 -11.14385 -11.05211 -10.89761 -10.79118 -10.63490 -10.11169 -9.63568 -9.39073 -8.54661 -8.10028 -7.80256 -7.79149 -6.98322 -6.54703 -4.66789 1.09104 1.67857 2.27990 2.78261 3.03951 3.05785 3.08495 3.27427 3.54736 3.86368 4.00561 4.54365 4.66778 4.84586 5.05886 5.21454 5.45350 5.52892 5.64809 5.75318 5.87742 6.07697 6.18151 6.24007 6.32434 6.44070 6.56915 6.57922 6.65731 6.91951 7.09426 7.12022 7.20271 7.38779 7.47765 7.56344 7.77879 7.90102 8.07261 8.50612 8.75000 9.85243 10.17267 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.004435 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.787544 B = 6312.468450 C = 7580.399171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.425 4.425 8 H 0.086 0.914 9 C 0.257 3.743 10 C -0.269 4.269 11 C -0.055 4.055 12 C -0.311 4.311 13 C 0.195 3.805 14 C 0.145 3.855 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.037 4.037 18 C -0.188 4.188 19 C 0.105 3.895 20 F -0.146 7.146 21 C -0.168 4.168 22 C 0.121 3.879 23 N -0.586 5.586 24 H 0.414 0.586 25 N -0.457 5.457 26 H 0.275 0.725 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 -3.494 0.019 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.455 4.455 8 H 0.105 0.895 9 C 0.132 3.868 10 C -0.293 4.293 11 C -0.078 4.078 12 C -0.335 4.335 13 C 0.049 3.951 14 C 0.039 3.961 15 C -0.172 4.172 16 C -0.125 4.125 17 C -0.056 4.056 18 C -0.208 4.208 19 C 0.085 3.915 20 F -0.125 7.125 21 C -0.190 4.190 22 C 0.012 3.988 23 N -0.190 5.190 24 H 0.251 0.749 25 N -0.170 5.170 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.185 0.815 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.300 -2.642 0.014 8.711 hybrid contribution 0.795 -0.932 0.000 1.225 sum -7.505 -3.574 0.014 8.313 Atomic orbital electron populations 1.70094 1.07183 1.28087 1.27685 1.26060 0.94977 1.01156 0.93563 0.86293 0.80450 0.80637 0.79307 1.19342 1.19980 1.18549 1.19637 0.94403 0.89246 1.42238 0.89541 1.18488 0.87442 0.92141 0.88709 1.21827 0.98961 0.93436 1.15040 1.20730 0.93574 0.96839 0.96689 1.21047 0.94910 0.96045 1.21516 1.18862 0.88824 0.90540 0.96841 1.18693 0.89628 0.85173 1.02648 1.22082 0.88222 0.99159 1.07749 1.19439 0.94350 0.91836 1.06871 1.20166 0.89666 0.99745 0.95980 1.20478 0.99243 0.91914 1.09143 1.17099 0.80046 0.89969 1.04383 1.91452 1.45583 1.81190 1.94237 1.19686 0.88920 0.99581 1.10823 1.17747 0.84434 0.93673 1.02983 1.41803 1.03298 1.08609 1.65287 0.74916 1.68710 1.07409 1.24372 1.16537 0.91344 0.87985 0.88299 0.89289 0.81536 0.85027 0.85235 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.56 11.46 55.55 0.64 -16.92 16 2 C 0.07 1.64 5.50 -17.35 -0.10 1.55 16 3 Si 0.91 17.61 29.56 -169.99 -5.02 12.59 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.42 -10.72 9.14 -37.75 -0.34 -11.07 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.62 16 9 C 0.26 6.68 6.55 -85.01 -0.56 6.12 16 10 C -0.27 -6.27 9.83 -38.61 -0.38 -6.65 16 11 C -0.05 -1.16 10.14 -39.40 -0.40 -1.56 16 12 C -0.31 -6.62 9.74 -38.72 -0.38 -6.99 16 13 C 0.19 4.54 6.75 -83.02 -0.56 3.98 16 14 C 0.15 2.98 6.87 -82.24 -0.57 2.42 16 15 C -0.15 -2.97 10.70 -37.32 -0.40 -3.37 16 16 C -0.12 -2.08 6.36 -105.14 -0.67 -2.75 16 17 C -0.04 -0.54 10.06 -39.59 -0.40 -0.94 16 18 C -0.19 -2.51 9.95 -39.88 -0.40 -2.91 16 19 C 0.11 1.50 7.28 -39.36 -0.29 1.21 16 20 F -0.15 -2.03 17.25 2.25 0.04 -1.99 16 21 C -0.17 -2.43 10.05 -39.35 -0.40 -2.82 16 22 C 0.12 2.01 7.26 -83.93 -0.61 1.40 16 23 N -0.59 -9.92 5.97 -7.28 -0.04 -9.97 16 24 H 0.41 5.87 7.91 -40.82 -0.32 5.55 16 25 N -0.46 -11.86 7.50 -7.75 -0.06 -11.92 16 26 H 0.28 6.15 8.29 -40.82 -0.34 5.82 16 27 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.09 1.61 7.03 -52.49 -0.37 1.24 16 30 H 0.17 3.58 8.06 -52.49 -0.42 3.15 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -27.36 298.66 -9.16 -36.52 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.77 Total: 9.58 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -6.43 Total: -22.39 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.53 Total: -38.81 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.02 Total: 12.59 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.36 -9.16 -36.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245587207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.085 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds