Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86797 * 120.00137 * 2 1 4 4 H 1.48496 * 109.47173 * 270.00182 * 3 2 1 5 5 H 1.48502 * 109.47214 * 30.00327 * 3 2 1 6 6 H 1.48498 * 109.46990 * 149.99939 * 3 2 1 7 7 C 1.40019 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99992 * 192.39168 * 7 2 1 9 9 C 1.40674 * 120.00059 * 12.39342 * 7 2 1 10 10 C 1.41277 * 120.98614 * 26.81525 * 9 7 2 11 11 C 1.36711 * 118.37526 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.44993 * 0.02562 * 11 10 9 13 13 N 1.31490 * 122.19042 * 359.95532 * 12 11 10 14 14 C 1.33048 * 121.63334 * 0.02562 * 13 12 11 15 15 C 1.46940 * 120.33830 * 179.97438 * 14 13 12 16 16 C 1.36274 * 125.44037 * 34.69234 * 15 14 13 17 17 C 1.41509 * 107.73930 * 179.84795 * 16 15 14 18 18 C 1.40174 * 133.31903 * 180.09929 * 17 16 15 19 19 C 1.36438 * 119.84922 * 180.35283 * 18 17 16 20 20 C 1.39139 * 120.57110 * 359.96826 * 19 18 17 21 21 F 1.35106 * 119.70079 * 180.02562 * 20 19 18 22 22 C 1.38046 * 120.59395 * 0.02562 * 20 19 18 23 23 C 1.39010 * 119.80294 * 0.04834 * 22 20 19 24 24 N 1.37803 * 133.12977 * 179.97438 * 23 22 20 25 25 H 0.97003 * 125.61798 * 359.97438 * 24 23 22 26 26 H 0.97005 * 119.99519 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.80977 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.77355 * 180.02562 * 11 10 9 29 29 H 1.08000 * 118.90961 * 179.97438 * 12 11 10 30 30 H 1.07999 * 126.12511 * 0.02562 * 16 15 14 31 31 H 1.07993 * 120.07422 * 0.36874 * 18 17 16 32 32 H 1.08001 * 119.71123 * 180.02562 * 19 18 17 33 33 H 1.07996 * 120.09484 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5397 1.4401 0.7000 7 6 2.0082 -1.2126 -0.0005 8 1 3.0693 -1.2236 0.2001 9 6 1.3294 -2.4166 -0.2625 10 6 0.1548 -2.4334 -1.0474 11 6 -0.4621 -3.6332 -1.2679 12 6 0.0593 -4.8019 -0.7296 13 7 1.1510 -4.8094 0.0032 14 6 1.8195 -3.6907 0.2709 15 6 3.0363 -3.7319 1.0936 16 6 3.9505 -4.7425 1.1022 17 6 4.9680 -4.3957 2.0224 18 6 6.1440 -5.0332 2.4411 19 6 6.9434 -4.4392 3.3738 20 6 6.6021 -3.2033 3.9144 21 9 7.4068 -2.6309 4.8365 22 6 5.4489 -2.5569 3.5171 23 6 4.6190 -3.1445 2.5693 24 7 3.4321 -2.7568 1.9864 25 1 2.9541 -1.9334 2.1721 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2464 -1.5204 -1.4623 28 1 -1.3613 -3.6723 -1.8650 29 1 -0.4485 -5.7361 -0.9192 30 1 3.9077 -5.6448 0.5103 31 1 6.4170 -5.9921 2.0262 32 1 7.8492 -4.9321 3.6945 33 1 5.1916 -1.5981 3.9423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245587452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = 27.147082 kcal Electronic energy + Delta-G solvation = -20584.238605 eV Core-core repulsion = 17295.764101 eV Total energy + Delta-G solvation = -3288.474504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.54468 -40.80747 -38.23578 -36.12653 -34.47178 -31.74533 -30.90222 -30.63321 -28.97671 -27.61570 -25.73031 -23.26676 -21.86075 -21.70392 -20.81474 -19.66855 -17.90541 -17.50694 -16.74156 -15.93359 -15.61553 -15.28430 -15.00731 -14.59756 -14.49606 -13.96133 -13.73889 -13.48238 -12.92602 -12.85596 -12.62428 -12.34119 -11.96989 -11.76267 -11.69718 -11.38507 -11.29287 -10.90580 -10.82831 -10.67815 -10.13432 -9.74474 -9.40463 -8.60034 -8.27958 -8.06688 -7.69462 -7.25135 -6.87442 -4.84667 1.23765 1.86561 2.19098 2.61660 2.82095 2.84730 2.97016 3.44471 3.56396 3.65493 4.16856 4.28816 4.72664 5.01383 5.22360 5.34776 5.41050 5.65632 5.72576 5.76152 6.07438 6.11783 6.19944 6.33907 6.43023 6.47635 6.57119 6.60401 6.68060 6.78084 6.94508 7.19197 7.31211 7.43867 7.55268 7.59895 7.68218 8.00695 8.17173 8.26777 8.38545 9.34173 9.66761 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.006091 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.246733 B = 4595.778695 C = 6240.545059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.092 3.908 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.032 4.032 13 N -0.433 5.433 14 C 0.004 3.996 15 C 0.210 3.790 16 C -0.210 4.210 17 C -0.099 4.099 18 C -0.054 4.054 19 C -0.181 4.181 20 C 0.090 3.910 21 F -0.148 7.148 22 C -0.156 4.156 23 C 0.102 3.898 24 N -0.570 5.570 25 H 0.425 0.575 26 H 0.290 0.710 27 H 0.130 0.870 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -1.228 2.409 6.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.108 0.892 9 C 0.087 3.913 10 C -0.161 4.161 11 C -0.158 4.158 12 C -0.194 4.194 13 N -0.141 5.141 14 C -0.135 4.135 15 C 0.100 3.900 16 C -0.234 4.234 17 C -0.104 4.104 18 C -0.072 4.072 19 C -0.201 4.201 20 C 0.070 3.930 21 F -0.127 7.127 22 C -0.178 4.178 23 C -0.008 4.008 24 N -0.173 5.173 25 H 0.266 0.734 26 H 0.101 0.899 27 H 0.148 0.852 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.511 -1.694 2.798 6.409 hybrid contribution -0.308 2.173 -0.170 2.201 sum 5.203 0.479 2.628 5.849 Atomic orbital electron populations 1.69751 1.07738 1.30392 1.31862 1.26077 0.94958 1.01874 0.91894 0.86175 0.80487 0.79570 0.80084 1.18652 1.19705 1.18077 1.19633 0.96773 0.90364 1.40745 0.89247 1.19419 0.91705 0.91754 0.88413 1.21416 0.97779 0.97115 0.99753 1.21420 0.99555 0.94396 1.00411 1.21584 0.96434 0.96758 1.04616 1.66989 1.06153 1.29727 1.11211 1.19659 0.97774 0.89857 1.06183 1.18262 0.93495 0.87475 0.90761 1.20630 0.95466 1.01396 1.05935 1.18275 0.96855 0.94898 1.00364 1.20132 0.92432 0.98973 0.95690 1.20407 1.02377 0.95552 1.01773 1.17071 0.90334 0.93509 0.92109 1.91436 1.72357 1.84765 1.64174 1.19721 0.95124 1.01628 1.01342 1.17843 0.89085 0.95787 0.98106 1.42355 1.19281 1.20946 1.34678 0.73405 0.89897 0.85183 0.88062 0.85798 0.84035 0.85522 0.85586 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.36 10.85 55.55 0.60 -16.75 16 2 C 0.07 1.59 5.26 -17.32 -0.09 1.50 16 3 Si 0.91 16.47 29.58 -169.99 -5.03 11.45 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 7 C -0.45 -10.27 7.32 -38.00 -0.28 -10.54 16 8 H 0.09 2.01 6.49 -52.49 -0.34 1.67 16 9 C 0.09 2.22 5.74 -104.47 -0.60 1.63 16 10 C -0.13 -3.15 8.74 -38.98 -0.34 -3.50 16 11 C -0.14 -2.92 9.98 -39.91 -0.40 -3.32 16 12 C -0.03 -0.69 11.11 -17.48 -0.19 -0.89 16 13 N -0.43 -10.10 10.23 -8.14 -0.08 -10.19 16 14 C 0.00 0.09 6.87 -80.46 -0.55 -0.46 16 15 C 0.21 4.53 6.31 -82.27 -0.52 4.01 16 16 C -0.21 -4.17 10.70 -39.04 -0.42 -4.59 16 17 C -0.10 -1.80 6.16 -106.91 -0.66 -2.45 16 18 C -0.05 -0.81 10.06 -39.50 -0.40 -1.21 16 19 C -0.18 -2.61 9.94 -39.90 -0.40 -3.01 16 20 C 0.09 1.42 7.29 -39.32 -0.29 1.13 16 21 F -0.15 -2.28 17.26 2.25 0.04 -2.25 16 22 C -0.16 -2.58 10.05 -39.37 -0.40 -2.97 16 23 C 0.10 1.88 7.25 -83.88 -0.61 1.27 16 24 N -0.57 -11.22 5.12 -7.29 -0.04 -11.26 16 25 H 0.43 8.11 7.42 -40.82 -0.30 7.81 16 26 H 0.29 5.87 8.30 -40.82 -0.34 5.54 16 27 H 0.13 3.06 6.26 -52.48 -0.33 2.74 16 28 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 29 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 293.95 15.07 4.43 4.43 Total: -1.00 -25.16 293.95 -8.85 -34.02 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -2.64 Total: 13.94 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -6.13 Total: -23.39 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.48 Total: -38.20 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.45 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.16 -8.85 -34.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245587452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.167 kcal (2) G-P(sol) polarization free energy of solvation -25.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds