Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86797 * 120.00137 * 2 1 4 4 H 1.48496 * 109.47173 * 270.00182 * 3 2 1 5 5 H 1.48502 * 109.47214 * 30.00327 * 3 2 1 6 6 H 1.48498 * 109.46990 * 149.99939 * 3 2 1 7 7 C 1.40019 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99992 * 192.39168 * 7 2 1 9 9 C 1.40674 * 120.00059 * 12.39342 * 7 2 1 10 10 C 1.41277 * 120.98614 * 26.81525 * 9 7 2 11 11 C 1.36711 * 118.37526 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.44993 * 0.02562 * 11 10 9 13 13 N 1.31490 * 122.19042 * 359.95532 * 12 11 10 14 14 C 1.33048 * 121.63334 * 0.02562 * 13 12 11 15 15 C 1.46940 * 120.33830 * 179.97438 * 14 13 12 16 16 C 1.36274 * 125.44037 * 34.69234 * 15 14 13 17 17 C 1.41509 * 107.73930 * 179.84795 * 16 15 14 18 18 C 1.40174 * 133.31903 * 180.09929 * 17 16 15 19 19 C 1.36438 * 119.84922 * 180.35283 * 18 17 16 20 20 C 1.39139 * 120.57110 * 359.96826 * 19 18 17 21 21 F 1.35106 * 119.70079 * 180.02562 * 20 19 18 22 22 C 1.38046 * 120.59395 * 0.02562 * 20 19 18 23 23 C 1.39010 * 119.80294 * 0.04834 * 22 20 19 24 24 N 1.37803 * 133.12977 * 179.97438 * 23 22 20 25 25 H 0.97003 * 125.61798 * 359.97438 * 24 23 22 26 26 H 0.97005 * 119.99519 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.80977 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.77355 * 180.02562 * 11 10 9 29 29 H 1.08000 * 118.90961 * 179.97438 * 12 11 10 30 30 H 1.07999 * 126.12511 * 0.02562 * 16 15 14 31 31 H 1.07993 * 120.07422 * 0.36874 * 18 17 16 32 32 H 1.08001 * 119.71123 * 180.02562 * 19 18 17 33 33 H 1.07996 * 120.09484 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5397 1.4401 0.7000 7 6 2.0082 -1.2126 -0.0005 8 1 3.0693 -1.2236 0.2001 9 6 1.3294 -2.4166 -0.2625 10 6 0.1548 -2.4334 -1.0474 11 6 -0.4621 -3.6332 -1.2679 12 6 0.0593 -4.8019 -0.7296 13 7 1.1510 -4.8094 0.0032 14 6 1.8195 -3.6907 0.2709 15 6 3.0363 -3.7319 1.0936 16 6 3.9505 -4.7425 1.1022 17 6 4.9680 -4.3957 2.0224 18 6 6.1440 -5.0332 2.4411 19 6 6.9434 -4.4392 3.3738 20 6 6.6021 -3.2033 3.9144 21 9 7.4068 -2.6309 4.8365 22 6 5.4489 -2.5569 3.5171 23 6 4.6190 -3.1445 2.5693 24 7 3.4321 -2.7568 1.9864 25 1 2.9541 -1.9334 2.1721 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2464 -1.5204 -1.4623 28 1 -1.3613 -3.6723 -1.8650 29 1 -0.4485 -5.7361 -0.9192 30 1 3.9077 -5.6448 0.5103 31 1 6.4170 -5.9921 2.0262 32 1 7.8492 -4.9321 3.6945 33 1 5.1916 -1.5981 3.9423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245587452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = 15.965673 kcal Electronic energy + Delta-G solvation = -20584.723467 eV Core-core repulsion = 17295.764101 eV Total energy + Delta-G solvation = -3288.959366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.79226 -42.22581 -39.90557 -37.46234 -36.15129 -33.19732 -32.52509 -32.25921 -30.33582 -29.11184 -27.37662 -24.74895 -23.46826 -23.16639 -22.22530 -21.21547 -19.48823 -18.99444 -18.20574 -17.45224 -16.99590 -16.54323 -16.38749 -16.18420 -16.00273 -15.48114 -15.22608 -14.75158 -14.40560 -14.29949 -14.11298 -13.95979 -13.46326 -13.36804 -13.30977 -12.85583 -12.80806 -12.31831 -12.20059 -11.93987 -11.77453 -11.36603 -10.80704 -10.30399 -10.00739 -9.69615 -9.08433 -8.87192 -8.38167 -6.57381 -0.14575 0.55682 0.62140 0.97344 1.32644 1.44277 1.45386 1.92007 2.06074 2.16975 2.61405 2.86078 3.44642 3.62442 3.73273 3.83137 4.14316 4.28813 4.31960 4.44439 4.47472 4.58356 4.73050 4.83439 4.93365 5.01045 5.09448 5.15763 5.19263 5.26714 5.51015 5.72196 5.74934 5.86625 5.89399 6.00178 6.21388 6.33002 6.55704 6.62608 6.70036 7.61712 8.05700 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.006091 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.246733 B = 4595.778695 C = 6240.545059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.042 3.958 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.462 4.462 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.158 4.158 11 C -0.136 4.136 12 C -0.040 4.040 13 N -0.451 5.451 14 C -0.010 4.010 15 C 0.174 3.826 16 C -0.205 4.205 17 C -0.119 4.119 18 C -0.045 4.045 19 C -0.173 4.173 20 C 0.097 3.903 21 F -0.144 7.144 22 C -0.169 4.169 23 C 0.091 3.909 24 N -0.572 5.572 25 H 0.423 0.577 26 H 0.298 0.702 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 -1.481 3.097 7.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.104 0.896 9 C 0.059 3.941 10 C -0.184 4.184 11 C -0.156 4.156 12 C -0.202 4.202 13 N -0.159 5.159 14 C -0.149 4.149 15 C 0.064 3.936 16 C -0.230 4.230 17 C -0.124 4.124 18 C -0.063 4.063 19 C -0.192 4.192 20 C 0.077 3.923 21 F -0.123 7.123 22 C -0.191 4.191 23 C -0.019 4.019 24 N -0.175 5.175 25 H 0.263 0.737 26 H 0.109 0.891 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.171 -1.964 3.488 8.212 hybrid contribution -0.738 2.156 -0.302 2.298 sum 6.433 0.192 3.186 7.181 Atomic orbital electron populations 1.69780 1.08895 1.31632 1.32102 1.26778 0.95546 1.04326 0.91026 0.85217 0.79172 0.75792 0.79956 1.18536 1.18702 1.18099 1.19729 0.96702 0.90944 1.41670 0.89574 1.19756 0.92527 0.92616 0.89162 1.21482 0.98462 0.97715 1.00710 1.21716 1.00230 0.93569 1.00101 1.22155 0.96045 0.98124 1.03834 1.67049 1.06963 1.29861 1.12046 1.20011 0.98586 0.89847 1.06432 1.18262 0.93949 0.89036 0.92372 1.20769 0.95548 1.00863 1.05806 1.18497 0.97923 0.95352 1.00671 1.20484 0.90872 0.99853 0.95094 1.20780 1.03135 0.94739 1.00567 1.17270 0.89766 0.93775 0.91521 1.91456 1.72072 1.84789 1.63952 1.19886 0.95417 1.02454 1.01326 1.18129 0.88850 0.96288 0.98632 1.42285 1.19834 1.20604 1.34796 0.73738 0.89083 0.86020 0.84955 0.82754 0.83718 0.82407 0.82077 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.57 10.85 21.84 0.24 -36.33 16 2 C 0.04 1.87 5.26 85.28 0.45 2.32 16 3 Si 0.98 33.82 29.58 68.60 2.03 35.85 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 6 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.46 -21.97 7.32 23.30 0.17 -21.80 16 8 H 0.09 4.03 6.49 -2.91 -0.02 4.01 16 9 C 0.06 3.23 5.74 -19.76 -0.11 3.11 16 10 C -0.16 -7.59 8.74 22.66 0.20 -7.39 16 11 C -0.14 -5.79 9.98 22.05 0.22 -5.57 16 12 C -0.04 -1.73 11.11 84.89 0.94 -0.79 16 13 N -0.45 -21.39 10.23 -179.68 -1.84 -23.22 16 14 C -0.01 -0.50 6.87 43.41 0.30 -0.20 16 15 C 0.17 7.71 6.31 39.99 0.25 7.96 16 16 C -0.20 -8.19 10.70 22.62 0.24 -7.95 16 17 C -0.12 -4.22 6.16 -21.34 -0.13 -4.35 16 18 C -0.04 -1.22 10.06 22.32 0.22 -0.99 16 19 C -0.17 -4.31 9.94 22.07 0.22 -4.09 16 20 C 0.10 2.78 7.29 22.44 0.16 2.95 16 21 F -0.14 -3.99 17.26 44.97 0.78 -3.21 16 22 C -0.17 -5.34 10.05 22.41 0.23 -5.12 16 23 C 0.09 3.31 7.25 39.05 0.28 3.59 16 24 N -0.57 -23.15 5.12 -176.97 -0.91 -24.06 16 25 H 0.42 16.84 7.42 -92.71 -0.69 16.16 16 26 H 0.30 12.19 8.30 -92.70 -0.77 11.42 16 27 H 0.12 5.93 6.26 -2.91 -0.02 5.92 16 28 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 29 H 0.16 5.48 8.06 -2.91 -0.02 5.45 16 30 H 0.15 5.49 8.06 -2.91 -0.02 5.47 16 31 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -54.85 293.95 4.43 -50.42 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.49 Total: 38.89 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.64 Total: -38.33 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.51 Total: -83.61 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Total: -54.85 4.43 -50.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245587452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.388 kcal (2) G-P(sol) polarization free energy of solvation -54.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds