Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38525 * 119.78111 * 2 1 4 4 C 1.37909 * 120.41632 * 180.02562 * 3 2 1 5 5 C 1.39572 * 119.96746 * 359.97438 * 4 3 2 6 6 C 1.43195 * 120.22399 * 179.97438 * 5 4 3 7 7 N 4.80190 * 137.19923 * 0.04432 * 3 1 2 8 8 C 1.40688 * 119.55855 * 0.02562 * 5 4 3 9 9 C 1.48157 * 120.20750 * 180.02562 * 8 5 4 10 10 C 1.39131 * 120.43049 * 244.70591 * 9 8 5 11 11 C 1.40921 * 118.11810 * 179.73979 * 10 9 8 12 12 C 1.41390 * 120.56994 * 180.27521 * 11 10 9 13 13 H 1.08000 * 120.00408 * 203.69431 * 12 11 10 14 14 C 1.39895 * 119.99731 * 23.70203 * 12 11 10 15 15 N 1.30863 * 120.00192 * 17.45344 * 14 12 11 16 16 Si 1.86797 * 120.00049 * 197.45385 * 14 12 11 17 17 H 1.48501 * 109.47336 * 94.68778 * 16 14 12 18 18 H 1.48499 * 109.47411 * 214.68978 * 16 14 12 19 19 H 1.48505 * 109.47125 * 334.68929 * 16 14 12 20 20 C 1.40811 * 118.86487 * 0.50012 * 11 10 9 21 21 N 1.31507 * 120.72387 * 359.75392 * 20 11 10 22 22 C 1.32150 * 122.08491 * 359.97438 * 21 20 11 23 23 F 1.35101 * 119.46570 * 179.97438 * 22 21 20 24 24 C 1.38027 * 119.77365 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47264 * 269.98612 * 1 2 3 26 26 H 1.09005 * 109.46636 * 29.98375 * 1 2 3 27 27 H 1.09000 * 109.47502 * 149.97865 * 1 2 3 28 28 H 1.08003 * 119.78908 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.01933 * 179.97438 * 4 3 2 30 30 H 1.08007 * 120.93890 * 359.97438 * 10 9 8 31 31 H 0.97002 * 119.99943 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.64316 * 179.77397 * 20 11 10 33 33 H 1.08001 * 119.98934 * 0.25669 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2023 0.0000 4 6 3.5741 1.2176 -0.0005 5 6 4.2846 0.0163 -0.0005 6 6 5.7165 0.0257 -0.0016 7 7 6.8525 0.0333 -0.0025 8 6 3.5846 -1.2041 -0.0005 9 6 4.3243 -2.4878 0.0000 10 6 4.2325 -3.3545 -1.0844 11 6 4.9610 -4.5598 -1.0349 12 6 4.9099 -5.4756 -2.1109 13 1 5.1288 -6.5197 -1.9423 14 6 4.5760 -5.0294 -3.3940 15 7 4.6443 -3.7546 -3.6818 16 14 4.0324 -6.2530 -4.6965 17 1 2.5495 -6.3301 -4.7152 18 1 4.5219 -5.8103 -6.0267 19 1 4.5937 -7.5917 -4.3829 20 6 5.7369 -4.8387 0.1066 21 7 5.7870 -3.9889 1.1089 22 6 5.1218 -2.8471 1.0951 23 9 5.2109 -2.0132 2.1543 24 6 2.1924 -1.1981 -0.0005 25 1 -0.3634 -0.0002 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6480 2.1336 -0.0004 29 1 4.1040 2.1586 -0.0009 30 1 3.6232 -3.1087 -1.9417 31 1 4.4124 -3.4451 -4.5714 32 1 6.2973 -5.7604 0.1594 33 1 1.6486 -2.1311 -0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245605329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = 24.241603 kcal Electronic energy + Delta-G solvation = -20807.884794 eV Core-core repulsion = 17519.284299 eV Total energy + Delta-G solvation = -3288.600495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.61971 -39.53570 -38.12542 -36.01155 -34.26357 -33.22606 -32.10874 -30.45534 -28.78240 -27.42747 -25.59917 -23.42363 -22.33995 -21.82237 -20.63464 -18.56241 -17.42157 -16.67885 -16.08475 -15.50243 -15.42952 -14.89559 -14.55444 -14.32493 -13.85579 -13.72152 -13.28725 -13.17206 -12.69541 -12.58260 -12.48650 -12.35396 -12.05588 -11.97892 -11.83567 -11.57866 -11.48657 -11.31693 -11.22502 -11.01155 -10.75257 -10.18734 -9.56249 -8.96743 -8.57262 -8.52446 -8.16554 -7.69037 -7.08627 -4.69080 0.99823 1.44450 2.24015 2.58840 2.91809 2.95794 2.97321 3.18777 3.29663 3.69802 4.16338 4.28348 4.32560 4.86278 4.88211 4.99647 5.09358 5.27708 5.39057 5.45395 5.58994 5.71837 5.76784 5.96012 6.07433 6.17953 6.34292 6.43249 6.52033 6.61369 6.73248 6.83504 6.87717 7.00765 7.34144 7.53208 7.68134 7.99597 8.13375 8.39113 8.41452 9.15387 9.83277 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.006414 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.387066 B = 4364.675577 C = 5245.540602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.069 4.069 5 C -0.024 4.024 6 C 0.261 3.739 7 N -0.418 5.418 8 C 0.043 3.957 9 C -0.120 4.120 10 C -0.091 4.091 11 C 0.054 3.946 12 C -0.438 4.438 13 H 0.090 0.910 14 C 0.072 3.928 15 N -0.781 5.781 16 Si 0.917 3.083 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.258 1.258 20 C 0.014 3.986 21 N -0.487 5.487 22 C 0.169 3.831 23 F -0.144 7.144 24 C -0.109 4.109 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.288 0.712 32 H 0.140 0.860 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 6.249 0.580 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.151 4.151 4 C -0.090 4.090 5 C -0.027 4.027 6 C -0.055 4.055 7 N -0.093 5.093 8 C 0.039 3.961 9 C -0.124 4.124 10 C -0.116 4.116 11 C 0.049 3.951 12 C -0.466 4.466 13 H 0.108 0.892 14 C -0.148 4.148 15 N -0.405 5.405 16 Si 0.740 3.260 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.147 4.147 21 N -0.198 5.198 22 C 0.015 3.985 23 F -0.124 7.124 24 C -0.127 4.127 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.969 6.288 1.141 10.215 hybrid contribution -0.959 -0.164 -1.201 1.546 sum -8.928 6.124 -0.060 10.827 Atomic orbital electron populations 1.20839 0.90908 1.03007 1.02491 1.20009 0.96226 0.92873 0.97090 1.20845 0.93361 0.97652 1.03200 1.20997 0.94160 0.96177 0.97623 1.16098 0.84630 0.94021 1.07948 1.25486 0.92652 0.93583 0.93737 1.81124 1.12081 1.07444 1.08646 1.18768 0.92786 0.91048 0.93460 1.19109 1.01758 0.95182 0.96306 1.21723 0.99729 0.94018 0.96128 1.18483 0.90197 0.92909 0.93529 1.19596 1.39295 0.96265 0.91488 0.89228 1.26042 0.92517 0.96046 1.00183 1.69781 1.32292 1.15671 1.22773 0.86135 0.79864 0.81076 0.78886 1.18984 1.19988 1.18181 1.22341 1.02384 0.98757 0.91231 1.66288 1.20303 1.02503 1.30745 1.17487 1.04857 0.90319 0.85847 1.91416 1.95768 1.69370 1.55868 1.21081 0.92356 0.98131 1.01092 0.90900 0.91403 0.91182 0.85391 0.85228 0.84104 0.90084 0.84295 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.00 36.01 0.36 -0.68 16 2 C -0.06 -0.76 5.88 -104.59 -0.62 -1.38 16 3 C -0.13 -1.54 9.67 -39.60 -0.38 -1.92 16 4 C -0.07 -0.94 9.75 -39.20 -0.38 -1.32 16 5 C -0.02 -0.42 5.63 -106.55 -0.60 -1.02 16 6 C 0.26 5.40 13.34 -22.48 -0.30 5.10 16 7 N -0.42 -9.42 18.54 41.84 0.78 -8.64 16 8 C 0.04 0.82 5.05 -104.54 -0.53 0.29 16 9 C -0.12 -2.73 4.69 -104.77 -0.49 -3.22 16 10 C -0.09 -2.17 8.51 -38.24 -0.33 -2.49 16 11 C 0.05 1.32 5.59 -106.71 -0.60 0.73 16 12 C -0.44 -10.38 9.08 -37.76 -0.34 -10.72 16 13 H 0.09 2.00 7.90 -52.49 -0.41 1.58 16 14 C 0.07 1.63 5.18 -17.34 -0.09 1.54 16 15 N -0.78 -18.35 10.92 55.54 0.61 -17.74 16 16 Si 0.92 16.76 29.59 -169.99 -5.03 11.73 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 20 C 0.01 0.35 10.96 -16.72 -0.18 0.17 16 21 N -0.49 -12.41 10.33 -12.56 -0.13 -12.54 16 22 C 0.17 4.16 7.77 -16.70 -0.13 4.03 16 23 F -0.14 -3.48 16.13 2.25 0.04 -3.44 16 24 C -0.11 -1.70 9.37 -39.30 -0.37 -2.06 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.14 3.36 6.19 -52.48 -0.33 3.03 16 31 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 32 H 0.14 3.05 8.06 -52.48 -0.42 2.62 16 33 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -28.67 306.20 -6.93 -35.60 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -2.83 Total: 3.40 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -4.97 Total: -12.98 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 1.25 Total: -38.92 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.67 -6.93 -35.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245605329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.840 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds