Wall clock time and date at job start Tue Mar 31 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86808 * 119.99569 * 2 1 4 4 H 1.48502 * 109.46931 * 239.99983 * 3 2 1 5 5 H 1.48493 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46920 * 120.00174 * 3 2 1 7 7 C 1.39873 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00160 * 197.93319 * 7 2 1 9 9 C 1.41346 * 119.99975 * 17.93523 * 7 2 1 10 10 C 1.40859 * 120.15138 * 24.58114 * 9 7 2 11 11 C 1.37569 * 120.02066 * 180.02562 * 10 9 7 12 12 C 1.38744 * 120.34921 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.84562 * 179.97438 * 12 11 10 14 14 C 1.40022 * 120.30929 * 359.97438 * 12 11 10 15 15 C 1.48371 * 120.01316 * 179.97438 * 14 12 11 16 16 C 1.41759 * 119.82964 * 129.98102 * 15 14 12 17 17 C 1.35637 * 119.67996 * 180.02562 * 16 15 14 18 18 C 1.41087 * 119.34594 * 359.97438 * 17 16 15 19 19 C 1.37975 * 133.51819 * 179.97438 * 18 17 16 20 20 N 1.33402 * 107.59892 * 179.97438 * 19 18 17 21 21 C 1.30895 * 109.90606 * 0.06462 * 20 19 18 22 22 N 1.35633 * 109.24785 * 359.95764 * 21 20 19 23 23 C 1.35843 * 119.83284 * 309.99579 * 15 14 12 24 24 C 1.38672 * 119.97161 * 0.25819 * 14 12 11 25 25 H 0.96994 * 120.00020 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99185 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.82533 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.16183 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.32438 * 180.02562 * 17 16 15 30 30 H 1.08001 * 126.20174 * 359.97438 * 19 18 17 31 31 H 1.08001 * 125.37712 * 179.97438 * 21 20 19 32 32 H 1.07999 * 119.78063 * 359.70986 * 23 15 14 33 33 H 1.07999 * 120.17112 * 179.72613 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.0964 1.6966 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0082 -1.2113 0.0005 8 1 3.0488 -1.2338 0.2885 9 6 1.3531 -2.4058 -0.3759 10 6 0.2243 -2.3589 -1.2172 11 6 -0.4116 -3.5231 -1.5814 12 6 0.0531 -4.7481 -1.1247 13 9 -0.5795 -5.8851 -1.4884 14 6 1.1745 -4.8114 -0.2887 15 6 1.6654 -6.1249 0.1963 16 6 3.0377 -6.4562 0.0671 17 6 3.4831 -7.6580 0.5110 18 6 2.5702 -8.5606 1.0962 19 6 2.6962 -9.8257 1.6322 20 7 1.4882 -10.2100 2.0477 21 6 0.6128 -9.2674 1.8052 22 7 1.2372 -8.2189 1.2132 23 6 0.7976 -7.0039 0.7615 24 6 1.8226 -3.6456 0.0905 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1426 -1.4085 -1.5757 27 1 -1.2770 -3.4834 -2.2263 28 1 3.7251 -5.7555 -0.3834 29 1 4.5264 -7.9210 0.4182 30 1 3.6077 -10.4007 1.7027 31 1 -0.4402 -9.3167 2.0397 32 1 -0.2452 -6.7404 0.8595 33 1 2.6852 -3.6904 0.7388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245895553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:03 Heat of formation + Delta-G solvation = 51.812930 kcal Electronic energy + Delta-G solvation = -20454.314622 eV Core-core repulsion = 17166.909710 eV Total energy + Delta-G solvation = -3287.404912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.72608 -42.48221 -38.15580 -36.75469 -33.87632 -33.17202 -31.68622 -29.91227 -28.57966 -27.60861 -25.24949 -23.66447 -22.69637 -21.60688 -21.03656 -20.54471 -17.80338 -17.37288 -16.49688 -16.34632 -15.67785 -15.53348 -15.12940 -14.64115 -14.55783 -14.41065 -14.09189 -13.46653 -13.26395 -12.93182 -12.31047 -12.13997 -12.00918 -11.79567 -11.63607 -11.30533 -11.23950 -10.98531 -10.62497 -10.52331 -10.21712 -10.13582 -9.76075 -9.33858 -9.05267 -7.84662 -7.57261 -7.20370 -7.01770 -4.60699 1.00069 1.38146 2.42100 2.52604 2.84701 2.94478 2.95202 3.00423 3.23215 3.66388 3.75091 4.29230 4.68233 4.73303 4.88578 5.09182 5.13181 5.22029 5.32504 5.53617 5.59051 5.84345 5.94000 6.04186 6.26898 6.41989 6.54253 6.64757 6.67461 6.78135 6.86116 6.95861 7.14214 7.36152 7.39464 7.60149 7.71040 7.90760 8.00247 8.28954 8.57894 8.60695 9.92718 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.004136 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.105125 B = 6768.866313 C = 7346.246460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.127 4.127 12 C -0.031 4.031 13 F -0.169 7.169 14 C -0.058 4.058 15 C -0.027 4.027 16 C -0.095 4.095 17 C -0.091 4.091 18 C 0.004 3.996 19 C -0.037 4.037 20 N -0.458 5.458 21 C 0.127 3.873 22 N -0.359 5.359 23 C 0.048 3.952 24 C -0.182 4.182 25 H 0.286 0.714 26 H 0.129 0.871 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.176 0.824 31 H 0.207 0.793 32 H 0.164 0.836 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -6.451 0.278 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.153 4.153 11 C -0.146 4.146 12 C -0.051 4.051 13 F -0.148 7.148 14 C -0.060 4.060 15 C -0.030 4.030 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.106 4.106 19 C -0.192 4.192 20 N -0.172 5.172 21 C -0.147 4.147 22 N -0.029 5.029 23 C -0.072 4.072 24 C -0.202 4.202 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.123 0.877 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.193 0.807 31 H 0.224 0.776 32 H 0.182 0.818 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.473 -7.104 0.710 7.556 hybrid contribution 0.198 1.441 -0.403 1.509 sum 2.671 -5.663 0.306 6.269 Atomic orbital electron populations 1.69793 1.07681 1.29954 1.33789 1.25952 0.94791 1.01647 0.91978 0.86287 0.80155 0.79743 0.80211 1.18593 1.20166 1.18810 1.19562 0.98360 0.90990 1.39376 0.89912 1.17566 0.91378 0.91978 0.89089 1.21334 0.98270 0.96550 0.99106 1.20643 1.00522 0.91559 1.01903 1.17242 0.97690 0.81417 1.08725 1.91296 1.81941 1.50092 1.91477 1.18031 0.96584 0.90772 1.00571 1.18433 0.92789 0.93986 0.97763 1.21256 0.94820 0.96513 0.98972 1.20392 0.98865 0.92723 0.99063 1.19773 0.84385 0.98265 1.08177 1.22386 0.96642 0.93287 1.06859 1.69913 1.00523 1.27378 1.19385 1.24895 1.00138 0.83610 1.06031 1.42973 1.09201 1.12636 1.38060 1.21689 1.00561 0.83674 1.01266 1.20876 1.03259 0.90829 1.05241 0.90341 0.85338 0.87699 0.84222 0.83769 0.80684 0.77603 0.81829 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.51 10.96 55.54 0.61 -17.90 16 2 C 0.08 1.71 5.13 -17.35 -0.09 1.62 16 3 Si 0.91 16.98 29.60 -169.99 -5.03 11.95 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.45 -10.79 9.04 -37.79 -0.34 -11.13 16 8 H 0.08 1.87 7.91 -52.49 -0.41 1.45 16 9 C 0.10 2.44 5.57 -106.86 -0.60 1.85 16 10 C -0.13 -3.12 8.69 -38.83 -0.34 -3.45 16 11 C -0.13 -2.77 9.99 -39.64 -0.40 -3.16 16 12 C -0.03 -0.66 7.14 -38.73 -0.28 -0.94 16 13 F -0.17 -3.49 15.82 2.25 0.04 -3.45 16 14 C -0.06 -1.19 5.46 -104.90 -0.57 -1.76 16 15 C -0.03 -0.48 5.29 -105.24 -0.56 -1.04 16 16 C -0.09 -1.47 9.53 -39.17 -0.37 -1.84 16 17 C -0.09 -1.25 10.10 -39.43 -0.40 -1.65 16 18 C 0.00 0.06 6.80 -84.06 -0.57 -0.51 16 19 C -0.04 -0.54 12.01 -16.97 -0.20 -0.75 16 20 N -0.46 -7.26 11.19 -13.81 -0.15 -7.42 16 21 C 0.13 1.88 12.78 -89.50 -1.14 0.74 16 22 N -0.36 -5.77 2.95 -62.00 -0.18 -5.95 16 23 C 0.05 0.81 9.75 -16.16 -0.16 0.65 16 24 C -0.18 -3.97 9.25 -38.56 -0.36 -4.32 16 25 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 26 H 0.13 3.08 6.15 -52.49 -0.32 2.75 16 27 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 28 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.21 2.29 8.06 -52.49 -0.42 1.86 16 32 H 0.16 2.62 7.67 -52.49 -0.40 2.22 16 33 H 0.11 2.17 8.04 -52.49 -0.42 1.74 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -26.53 296.69 -9.43 -35.96 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -2.81 Total: 8.04 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -6.37 Total: -25.70 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.27 Total: -31.27 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.53 -9.43 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245895553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.773 kcal (2) G-P(sol) polarization free energy of solvation -26.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds