Wall clock time and date at job start Tue Mar 31 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48498 * 109.47400 * 270.27250 * 3 2 1 5 5 H 1.48495 * 109.47314 * 30.27738 * 3 2 1 6 6 H 1.48502 * 109.47196 * 150.27495 * 3 2 1 7 7 C 1.39901 * 120.00015 * 180.27627 * 2 1 3 8 8 H 1.07998 * 120.00506 * 160.31855 * 7 2 1 9 9 C 1.40768 * 119.99866 * 340.31166 * 7 2 1 10 10 C 1.41035 * 120.35739 * 322.99558 * 9 7 2 11 11 F 1.35108 * 120.08884 * 359.97438 * 10 9 7 12 12 C 1.37630 * 119.81496 * 179.97438 * 10 9 7 13 13 C 1.38916 * 120.55093 * 359.97438 * 12 10 9 14 14 C 1.37979 * 120.72518 * 359.97438 * 13 12 10 15 15 C 1.39241 * 120.16172 * 359.78518 * 14 13 12 16 16 C 1.47700 * 120.27222 * 180.25979 * 15 14 13 17 17 C 1.41877 * 119.88269 * 129.92846 * 16 15 14 18 18 C 1.35587 * 119.63456 * 179.79165 * 17 16 15 19 19 C 1.41130 * 119.40023 * 0.44855 * 18 17 16 20 20 C 1.37959 * 133.44131 * 179.80695 * 19 18 17 21 21 N 1.33453 * 107.62972 * 179.97438 * 20 19 18 22 22 C 1.30846 * 109.91773 * 359.97438 * 21 20 19 23 23 N 1.35818 * 109.21063 * 359.97438 * 22 21 20 24 24 C 1.36506 * 119.87988 * 310.20552 * 16 15 14 25 25 H 0.97000 * 119.99803 * 359.72297 * 1 2 3 26 26 H 1.07996 * 119.72455 * 179.97438 * 12 10 9 27 27 H 1.07994 * 119.63929 * 179.97438 * 13 12 10 28 28 H 1.08000 * 119.91941 * 180.02562 * 14 13 12 29 29 H 1.08002 * 120.17974 * 0.02562 * 17 16 15 30 30 H 1.07996 * 120.29651 * 180.28071 * 18 17 16 31 31 H 1.08003 * 126.18491 * 359.97438 * 20 19 18 32 32 H 1.08001 * 125.39461 * 179.97438 * 22 21 20 33 33 H 1.08001 * 119.80550 * 359.95656 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4847 2.0498 -1.4000 5 1 1.4434 2.6509 0.7059 6 1 3.5434 1.4385 0.6942 7 6 2.0084 -1.2116 -0.0058 8 1 3.0411 -1.2375 -0.3210 9 6 1.3663 -2.3970 0.3992 10 6 0.4378 -2.3778 1.4606 11 9 0.1595 -1.2185 2.0962 12 6 -0.1839 -3.5432 1.8470 13 6 0.0947 -4.7404 1.1998 14 6 0.9984 -4.7848 0.1580 15 6 1.6409 -3.6227 -0.2608 16 6 2.6044 -3.6664 -1.3795 17 6 2.4865 -2.7432 -2.4504 18 6 3.3763 -2.7852 -3.4726 19 6 4.4017 -3.7548 -3.4593 20 6 5.4333 -4.0564 -4.3242 21 7 6.1079 -5.0845 -3.8057 22 6 5.5660 -5.4465 -2.6711 23 7 4.4991 -4.6474 -2.4103 24 6 3.6016 -4.5986 -1.3821 25 1 -0.4850 0.8401 0.0041 26 1 -0.8943 -3.5269 2.6603 27 1 -0.4013 -5.6462 1.5154 28 1 1.2049 -5.7226 -0.3363 29 1 1.6947 -2.0087 -2.4494 30 1 3.2993 -2.0846 -4.2910 31 1 5.6549 -3.5517 -5.2530 32 1 5.9121 -6.2530 -2.0417 33 1 3.6825 -5.3004 -0.5652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245900883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:21 Heat of formation + Delta-G solvation = 58.640844 kcal Electronic energy + Delta-G solvation = -21066.026089 eV Core-core repulsion = 17778.917257 eV Total energy + Delta-G solvation = -3287.108832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.17847 -42.21857 -38.20088 -36.28512 -33.93042 -32.88200 -31.61635 -29.86312 -28.46405 -27.33184 -25.46488 -23.53427 -22.27068 -21.35635 -21.10802 -20.22601 -17.68961 -17.32625 -16.46363 -15.75388 -15.59699 -15.28481 -14.78224 -14.46701 -14.43206 -14.12285 -13.90254 -13.58568 -13.10034 -12.94781 -12.29219 -11.94367 -11.71983 -11.55468 -11.39713 -11.22092 -11.06399 -10.83739 -10.77611 -10.40320 -10.22283 -9.95306 -9.72682 -9.27630 -8.78262 -7.71237 -7.40964 -7.07585 -6.95490 -4.66915 1.27622 1.67024 2.46014 2.55416 2.97841 2.99135 3.05010 3.09648 3.43457 3.79092 3.96543 4.35979 4.92395 4.92703 5.13633 5.16747 5.40023 5.48711 5.57401 5.76459 5.84161 5.85897 6.02102 6.28759 6.34357 6.41852 6.66257 6.75129 6.82931 6.91433 6.94542 7.12124 7.22499 7.33741 7.51420 7.59410 7.66693 7.87248 8.15457 8.22665 8.48342 8.58063 9.92775 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.006633 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.395451 B = 4220.194018 C = 5532.294881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.087 0.913 9 C 0.109 3.891 10 C 0.046 3.954 11 F -0.141 7.141 12 C -0.130 4.130 13 C -0.212 4.212 14 C -0.079 4.079 15 C -0.160 4.160 16 C 0.019 3.981 17 C -0.068 4.068 18 C -0.110 4.110 19 C 0.013 3.987 20 C -0.050 4.050 21 N -0.461 5.461 22 C 0.113 3.887 23 N -0.353 5.353 24 C 0.004 3.996 25 H 0.288 0.712 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.172 0.828 32 H 0.203 0.797 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 -3.666 -2.234 4.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.105 0.895 9 C 0.105 3.895 10 C 0.026 3.974 11 F -0.120 7.120 12 C -0.149 4.149 13 C -0.232 4.232 14 C -0.098 4.098 15 C -0.163 4.163 16 C 0.016 3.984 17 C -0.089 4.089 18 C -0.130 4.130 19 C -0.098 4.098 20 C -0.204 4.204 21 N -0.175 5.175 22 C -0.161 4.161 23 N -0.023 5.023 24 C -0.116 4.116 25 H 0.098 0.902 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.189 0.811 32 H 0.220 0.780 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.056 -3.972 -2.476 5.590 hybrid contribution -0.573 1.332 0.633 1.582 sum 2.483 -2.640 -1.844 4.066 Atomic orbital electron populations 1.69765 1.07792 1.30419 1.30993 1.25829 0.94649 1.01370 0.92371 0.86318 0.80844 0.80477 0.79444 1.19186 1.19830 1.18268 1.19303 0.99129 0.90896 1.38826 0.89472 1.17413 0.90288 0.92359 0.89393 1.17749 1.03212 0.80715 0.95720 1.91350 1.92597 1.47838 1.80223 1.20696 1.00580 0.92625 1.01024 1.20072 1.05119 0.96324 1.01655 1.20644 0.96824 0.95782 0.96514 1.18117 1.05029 0.94171 0.98949 1.18266 0.93111 0.92600 0.94391 1.21455 0.98684 0.97467 0.91326 1.20379 0.94021 0.98046 1.00515 1.19753 1.01634 0.96604 0.91783 1.22291 0.96015 1.00147 1.01980 1.69839 1.27420 1.12872 1.07390 1.24756 0.90517 1.02146 0.98663 1.42828 1.20567 1.23228 1.15674 1.21712 0.92615 1.04584 0.92710 0.90151 0.87871 0.88033 0.88379 0.83623 0.84299 0.81080 0.78023 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.65 11.14 55.55 0.62 -18.03 16 2 C 0.08 1.86 4.51 -17.33 -0.08 1.78 16 3 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -10.81 6.64 -38.00 -0.25 -11.06 16 8 H 0.09 2.06 7.28 -52.49 -0.38 1.68 16 9 C 0.11 2.59 5.39 -106.48 -0.57 2.01 16 10 C 0.05 1.11 6.67 -38.74 -0.26 0.85 16 11 F -0.14 -3.57 14.30 2.25 0.03 -3.53 16 12 C -0.13 -2.75 9.99 -39.55 -0.40 -3.14 16 13 C -0.21 -4.10 10.02 -39.43 -0.40 -4.49 16 14 C -0.08 -1.52 9.42 -39.30 -0.37 -1.89 16 15 C -0.16 -3.37 5.51 -104.26 -0.57 -3.95 16 16 C 0.02 0.37 4.92 -105.27 -0.52 -0.15 16 17 C -0.07 -1.27 8.25 -39.14 -0.32 -1.59 16 18 C -0.11 -1.82 10.09 -39.43 -0.40 -2.21 16 19 C 0.01 0.23 6.80 -84.05 -0.57 -0.34 16 20 C -0.05 -0.82 12.01 -16.95 -0.20 -1.02 16 21 N -0.46 -7.90 11.19 -13.77 -0.15 -8.06 16 22 C 0.11 1.77 12.78 -89.38 -1.14 0.63 16 23 N -0.35 -6.01 2.95 -61.86 -0.18 -6.19 16 24 C 0.00 0.06 10.40 -16.06 -0.17 -0.10 16 25 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 26 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.10 1.63 8.02 -52.49 -0.42 1.21 16 29 H 0.15 2.85 7.35 -52.49 -0.39 2.47 16 30 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.17 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.16 2.33 7.98 -52.49 -0.42 1.91 16 LS Contribution 293.09 15.07 4.42 4.42 Total: -1.00 -26.87 293.09 -9.38 -36.24 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.86 Total: 6.96 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -6.22 Total: -24.68 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.28 Total: -32.27 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.03 Total: -3.53 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.87 -9.38 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245900883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.885 kcal (2) G-P(sol) polarization free energy of solvation -26.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds