Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36875 * 126.39945 * 2 1 4 4 Cl 1.73596 * 126.60066 * 359.97438 * 3 2 1 5 5 C 1.34794 * 106.80375 * 179.97438 * 3 2 1 6 6 N 1.34169 * 108.01578 * 359.97438 * 5 3 2 7 7 C 1.30469 * 109.26708 * 0.02562 * 6 5 3 8 8 C 1.50701 * 125.64491 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46998 * 269.99870 * 8 7 6 10 10 C 1.46897 * 110.99760 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46881 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47308 * 305.00041 * 11 10 9 13 13 C 1.47196 * 109.47062 * 65.00238 * 11 10 9 14 14 N 6.58108 * 107.06019 * 219.79396 * 2 1 3 15 15 C 1.53000 * 109.47408 * 185.00285 * 11 10 9 16 16 C 1.50694 * 109.47733 * 174.99826 * 15 11 10 17 17 H 1.08005 * 119.99308 * 0.02562 * 16 15 11 18 18 C 1.37875 * 120.00537 * 179.97438 * 16 15 11 19 19 N 1.31512 * 119.99996 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99864 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47149 * 89.99744 * 20 18 16 22 22 H 1.48504 * 109.46931 * 210.00134 * 20 18 16 23 23 H 1.48502 * 109.46686 * 329.99767 * 20 18 16 24 24 H 1.09006 * 109.46775 * 89.97989 * 1 2 3 25 25 H 1.09004 * 109.47219 * 209.97683 * 1 2 3 26 26 H 1.08990 * 109.47239 * 329.97767 * 1 2 3 27 27 H 1.08000 * 125.99658 * 179.73953 * 5 3 2 28 28 H 1.09002 * 109.47235 * 29.99467 * 8 7 6 29 29 H 1.09000 * 109.47111 * 149.99840 * 8 7 6 30 30 H 1.00893 * 110.99878 * 303.95169 * 9 8 7 31 31 H 1.08993 * 109.47995 * 300.00192 * 10 9 8 32 32 H 1.08999 * 109.46963 * 60.00807 * 10 9 8 33 33 H 1.08997 * 109.47243 * 295.00429 * 15 11 10 34 34 H 1.09001 * 109.47171 * 55.00022 * 15 11 10 35 35 H 0.97000 * 120.00102 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 17 1.7697 2.7618 -0.0006 5 6 3.5471 0.6496 0.0006 6 7 3.5101 -0.6915 0.0015 7 6 2.2671 -1.0879 0.0010 8 6 1.8025 -2.5215 0.0022 9 7 1.6526 -2.9889 -1.3824 10 6 1.2004 -4.3860 -1.4204 11 6 1.0556 -4.8358 -2.8756 12 1 0.3930 -4.1500 -3.4036 13 6 2.3777 -4.8366 -3.5228 14 7 3.3957 -4.8341 -4.0267 15 6 0.4666 -6.2473 -2.9170 16 6 0.2095 -6.6426 -4.3483 17 1 0.4433 -5.9559 -5.1484 18 6 -0.3231 -7.8813 -4.6364 19 7 -0.5469 -8.2264 -5.8855 20 14 -0.7267 -9.0692 -3.2524 21 1 -2.1245 -8.8483 -2.8023 22 1 -0.5778 -10.4645 -3.7386 23 1 0.2014 -8.8392 -2.1162 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5141 27 1 4.4381 1.2599 -0.0032 28 1 2.5367 -3.1410 0.5172 29 1 0.8434 -2.5922 0.5154 30 1 1.0255 -2.3914 -1.8998 31 1 1.9306 -5.0182 -0.9153 32 1 0.2373 -4.4700 -0.9171 33 1 1.1701 -6.9479 -2.4673 34 1 -0.4707 -6.2663 -2.3609 35 1 -0.9213 -9.0980 -6.0882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262558740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = 79.221699 kcal Electronic energy + Delta-G solvation = -18817.770044 eV Core-core repulsion = 15684.873872 eV Total energy + Delta-G solvation = -3132.896172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.46399 -37.59884 -37.09672 -35.40076 -34.43424 -33.61403 -32.01850 -30.04012 -27.71723 -27.18073 -25.07452 -22.69817 -21.84179 -21.49879 -20.30005 -17.75047 -17.15599 -16.89729 -16.42375 -15.58762 -15.22980 -14.90816 -14.39317 -14.26893 -13.95298 -13.48892 -13.34551 -13.14455 -12.87423 -12.57327 -12.41372 -12.19597 -12.14100 -11.95432 -11.83925 -11.37291 -11.23608 -10.80809 -10.45063 -10.26330 -10.00577 -9.98076 -9.81983 -9.36318 -8.70891 -8.64569 -8.50423 -6.13307 -4.14372 1.27059 1.47129 2.52716 2.72787 3.22701 3.32502 3.32964 3.69661 3.79084 3.94316 4.24622 4.25930 4.35386 4.57378 4.65754 4.77142 4.93095 5.04099 5.14643 5.21336 5.27091 5.44955 5.55542 5.72208 5.76236 6.12232 6.17496 6.23047 6.61307 6.79734 6.86650 7.07916 7.17992 7.60307 7.71069 8.37733 8.55569 8.90419 9.46182 10.99820 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.003052 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.759352 B = 9171.374433 C = 9361.761123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.453 5.453 3 C 0.008 3.992 4 Cl -0.011 7.011 5 C 0.009 3.991 6 N -0.461 5.461 7 C 0.234 3.766 8 C 0.146 3.854 9 N -0.683 5.683 10 C 0.065 3.935 11 C 0.021 3.979 12 H 0.104 0.896 13 C 0.248 3.752 14 N -0.465 5.465 15 C -0.004 4.004 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.263 1.263 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.180 0.820 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.342 0.658 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.032 0.968 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 18.890 17.238 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.139 5.139 3 C -0.132 4.132 4 Cl 0.017 6.983 5 C -0.142 4.142 6 N -0.179 5.179 7 C -0.029 4.029 8 C 0.015 3.985 9 N -0.316 5.316 10 C -0.065 4.065 11 C -0.001 4.001 12 H 0.122 0.878 13 C -0.069 4.069 14 N -0.141 5.141 15 C -0.043 4.043 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.705 3.295 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.188 1.188 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.197 0.803 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.733 18.214 16.294 24.450 hybrid contribution -2.477 0.249 0.892 2.645 sum -1.744 18.462 17.186 25.284 Atomic orbital electron populations 1.22196 0.76020 1.05186 1.04551 1.45175 1.07899 1.05581 1.55195 1.21756 0.91322 0.82279 1.17829 1.98378 1.91760 1.10630 1.97553 1.22228 0.94463 0.91193 1.06277 1.70460 1.18389 1.10385 1.18643 1.23105 0.85465 0.89976 1.04317 1.20262 1.00438 0.86183 0.91575 1.60396 1.55768 1.03922 1.11475 1.22150 0.99760 0.87946 0.96624 1.18922 0.86893 1.02107 0.92140 0.87844 1.28631 0.94052 0.91568 0.92670 1.81014 1.13087 1.10248 1.09780 1.19633 0.96087 0.89353 0.99271 1.21021 1.42873 1.01987 0.90797 0.90781 1.24997 0.94875 0.97859 0.95401 1.69904 1.44106 1.21509 1.17929 0.86815 0.79141 0.80678 0.82903 1.20101 1.21295 1.18783 0.89606 0.88756 0.89293 0.80311 0.87285 0.93222 0.84018 0.89807 0.92949 0.95506 0.94953 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.84 59.85 0.65 0.99 16 2 N -0.45 -4.25 3.16 -117.77 -0.37 -4.62 16 3 C 0.01 0.09 7.49 -16.52 -0.12 -0.04 16 4 Cl -0.01 -0.09 28.93 -51.86 -1.50 -1.59 16 5 C 0.01 0.10 11.86 -17.75 -0.21 -0.11 16 6 N -0.46 -6.32 11.25 -10.76 -0.12 -6.44 16 7 C 0.23 2.65 7.42 -155.33 -1.15 1.50 16 8 C 0.15 1.40 5.99 -4.97 -0.03 1.37 16 9 N -0.68 -7.90 6.19 -115.06 -0.71 -8.61 16 10 C 0.06 0.79 5.05 -3.83 -0.02 0.77 16 11 C 0.02 0.36 2.35 -93.41 -0.22 0.14 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 13 C 0.25 5.10 13.67 -20.76 -0.28 4.81 16 14 N -0.46 -10.72 18.54 42.15 0.78 -9.94 16 15 C 0.00 -0.09 3.49 -27.89 -0.10 -0.19 16 16 C -0.53 -13.95 9.15 -34.44 -0.32 -14.26 16 17 H 0.07 2.16 7.84 -52.48 -0.41 1.75 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 20 Si 0.88 20.17 27.47 -169.99 -4.67 15.50 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.36 7.05 -51.93 -0.37 -0.01 16 26 H 0.09 0.40 7.92 -51.93 -0.41 -0.01 16 27 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.34 7.07 -51.93 -0.37 -0.03 16 30 H 0.34 3.55 8.72 -39.30 -0.34 3.21 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16 34 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -33.96 323.47 -7.21 -41.18 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.37 Total: -1.19 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.90 Total: -3.15 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.35 Total: -55.62 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.50 Total: -1.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.96 -7.21 -41.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262558740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.400 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds