Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 C 1.50701 * 109.47064 * 269.67433 * 8 7 5 10 10 O 1.20826 * 119.99939 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.45192 * 117.00018 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47278 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99775 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00197 * 179.97438 * 13 12 11 16 16 C 1.37090 * 119.99657 * 179.97438 * 15 13 12 17 17 H 1.07993 * 120.00814 * 0.02562 * 16 15 13 18 18 C 1.38959 * 119.99679 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47206 * 60.00037 * 20 18 16 22 22 H 1.48504 * 109.47107 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47169 * 300.00335 * 20 18 16 24 24 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 25 25 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 26 26 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 27 27 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 28 28 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 29 29 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 30 30 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 31 31 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 32 32 H 1.09001 * 109.47630 * 300.00318 * 12 11 9 33 33 H 1.08998 * 109.47321 * 60.00129 * 12 11 9 34 34 H 0.96999 * 119.99738 * 0.02562 * 15 13 12 35 35 H 0.96995 * 120.00373 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 6 1.8261 -3.0712 -1.4210 10 8 2.0314 -2.3136 -2.3396 11 8 1.4806 -4.3449 -1.6660 12 6 1.3720 -4.7423 -3.0582 13 6 0.9775 -6.1947 -3.1368 14 8 0.8044 -6.8320 -2.1193 15 7 0.8160 -6.7852 -4.3375 16 6 0.4577 -8.1065 -4.4088 17 1 0.3044 -8.6742 -3.5030 18 6 0.2906 -8.7152 -5.6468 19 7 0.4766 -8.0244 -6.7490 20 14 -0.1983 -10.5154 -5.7440 21 1 -1.5066 -10.7102 -5.0691 22 1 -0.3101 -10.9218 -7.1680 23 1 0.8336 -11.3456 -5.0723 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 5.2201 -1.5548 -1.0150 28 1 5.6637 -0.7851 0.5274 29 1 4.7628 -2.3202 0.5255 30 1 1.0054 -2.7038 0.5144 31 1 2.7232 -3.1702 0.5128 32 1 0.6147 -4.1333 -3.5520 33 1 2.3326 -4.5992 -3.5530 34 1 0.9540 -6.2755 -5.1511 35 1 0.3604 -8.4494 -7.6131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321639746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -69.619572 kcal Electronic energy + Delta-G solvation = -21327.335156 eV Core-core repulsion = 17714.982826 eV Total energy + Delta-G solvation = -3612.352330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.08911 -40.36167 -38.19902 -36.38439 -35.38278 -34.02837 -33.87145 -31.42205 -30.60445 -28.85643 -28.37480 -27.27925 -24.66355 -22.67338 -20.86795 -20.19784 -19.60713 -18.11422 -18.01913 -17.40375 -17.17574 -16.50531 -16.20546 -15.45131 -14.80197 -14.53378 -14.41367 -13.97843 -13.88555 -13.66967 -13.35369 -13.22504 -12.93929 -12.79672 -12.68490 -12.43196 -12.05808 -12.00394 -11.64223 -11.15376 -11.13240 -10.54185 -10.50982 -10.45495 -10.31509 -10.01067 -9.62083 -9.36986 -8.55206 -8.11061 -6.52336 -3.94611 1.24560 1.91680 2.24994 2.76790 2.95743 3.13528 3.21274 3.26056 3.70874 3.96248 4.09719 4.22248 4.45265 4.60526 4.70313 5.01657 5.04502 5.08663 5.12421 5.16972 5.25498 5.28210 5.39816 5.48923 5.51265 5.54536 5.66154 5.73621 5.94287 6.02948 6.58543 7.45209 7.80199 7.93127 8.11447 8.45748 9.04399 9.36545 9.86343 10.64784 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.039388 B = 0.002928 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.697735 B = 9559.609698 C = 9685.867398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.038 3.962 3 N -0.368 5.368 4 O 0.096 5.904 5 C -0.009 4.009 6 C -0.078 4.078 7 C -0.195 4.195 8 C -0.032 4.032 9 C 0.457 3.543 10 O -0.506 6.506 11 O -0.325 6.325 12 C 0.061 3.939 13 C 0.437 3.563 14 O -0.577 6.577 15 N -0.552 5.552 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 13.404 11.816 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 N -0.075 5.075 4 O 0.033 5.967 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.199 4.199 8 C -0.070 4.070 9 C 0.299 3.701 10 O -0.394 6.394 11 O -0.239 6.239 12 C -0.016 4.016 13 C 0.222 3.778 14 O -0.461 6.461 15 N -0.189 5.189 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.895 14.437 11.982 19.390 hybrid contribution -0.245 -1.238 -0.943 1.576 sum 4.650 13.199 11.039 17.824 Atomic orbital electron populations 1.20200 0.85909 1.04140 1.03352 1.23376 0.98907 0.88234 1.01644 1.73821 0.89192 1.23765 1.20693 1.84794 1.21715 1.22255 1.67916 1.24227 0.98060 0.83933 1.01085 1.20418 0.89993 0.98575 1.04591 1.20225 0.92135 0.95751 1.11834 1.19426 1.06126 0.89750 0.91718 1.23535 0.73656 0.80557 0.92377 1.90678 1.45992 1.56155 1.46590 1.86539 1.78945 1.28165 1.30292 1.22748 1.02975 0.96661 0.79230 1.19315 0.86151 0.87158 0.85156 1.90561 1.56057 1.65039 1.34413 1.41700 1.59878 1.11498 1.05822 1.19682 1.43776 0.85531 0.94334 0.87633 1.25316 0.97096 1.00664 0.94617 1.69600 1.48605 1.37546 0.97991 0.85855 0.79385 0.81488 0.77149 1.19727 1.20857 1.19728 0.89917 0.90319 0.90019 0.88974 0.89583 0.88860 0.86109 0.86178 0.89597 0.89571 0.77157 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 36.00 0.37 -0.37 16 2 C 0.04 0.46 7.33 -82.10 -0.60 -0.14 16 3 N -0.37 -5.00 12.07 33.42 0.40 -4.59 16 4 O 0.10 1.20 11.20 17.18 0.19 1.39 16 5 C -0.01 -0.10 7.49 -35.30 -0.26 -0.36 16 6 C -0.08 -0.53 10.30 36.00 0.37 -0.16 16 7 C -0.20 -2.23 4.82 -104.42 -0.50 -2.74 16 8 C -0.03 -0.33 6.14 -29.03 -0.18 -0.51 16 9 C 0.46 6.70 7.95 36.01 0.29 6.99 16 10 O -0.51 -8.65 15.78 -18.75 -0.30 -8.95 16 11 O -0.32 -5.70 9.75 -45.90 -0.45 -6.15 16 12 C 0.06 1.14 5.94 36.01 0.21 1.35 16 13 C 0.44 10.33 7.86 -10.98 -0.09 10.24 16 14 O -0.58 -15.68 16.08 -14.12 -0.23 -15.90 16 15 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 17 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 20 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.49 7.44 -51.93 -0.39 0.11 16 30 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 0.93 7.44 -51.93 -0.39 0.54 16 32 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 33 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 34 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -34.03 320.85 -4.51 -38.54 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.99 Total: 5.89 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.63 Total: 6.44 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 1.07 Total: -41.52 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.78 Total: -29.61 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.03 -4.51 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321639746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.078 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds