Wall clock time and date at job start Tue Mar 31 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86799 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47338 * 269.99858 * 3 2 1 5 5 H 1.48503 * 109.47053 * 29.99995 * 3 2 1 6 6 H 1.48500 * 109.47191 * 149.99935 * 3 2 1 7 7 C 1.38635 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99637 * 359.97438 * 7 2 1 10 10 C 1.35790 * 116.99647 * 174.96720 * 9 7 2 11 11 C 1.38901 * 119.99508 * 185.06527 * 10 9 7 12 12 C 1.38011 * 119.99729 * 179.76558 * 11 10 9 13 13 C 1.38918 * 119.99831 * 0.52861 * 12 11 10 14 14 N 1.40026 * 120.00187 * 179.69814 * 13 12 11 15 15 C 1.34780 * 119.99741 * 35.15289 * 14 13 12 16 16 O 1.21590 * 120.00230 * 355.49220 * 15 14 13 17 17 N 1.34773 * 120.00123 * 175.49179 * 15 14 13 18 18 O 1.41597 * 120.00135 * 179.97438 * 17 15 14 19 19 C 1.42903 * 113.99932 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47016 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.46965 * 65.00494 * 20 19 18 22 22 C 1.38905 * 119.99714 * 359.72976 * 13 12 11 23 23 C 1.38008 * 120.00171 * 359.97438 * 22 13 12 24 24 H 0.97006 * 119.99981 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00170 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.00407 * 180.25665 * 12 11 10 27 27 H 0.96991 * 120.00179 * 215.15199 * 14 13 12 28 28 H 0.97002 * 119.99916 * 359.97438 * 17 15 14 29 29 H 1.08992 * 109.47788 * 300.00566 * 19 18 17 30 30 H 1.09003 * 109.47025 * 60.00658 * 19 18 17 31 31 H 1.09001 * 109.46687 * 185.00432 * 20 19 18 32 32 H 1.08994 * 109.47126 * 305.00537 * 20 19 18 33 33 H 0.96697 * 113.99586 * 179.97438 * 21 20 19 34 34 H 1.08003 * 120.00108 * 179.97438 * 22 13 12 35 35 H 1.08003 * 120.00455 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3346 -2.3681 -0.0005 10 6 2.0701 -3.5046 -0.1072 11 6 1.4349 -4.7347 -0.2196 12 6 2.1823 -5.8894 -0.3329 13 6 3.5698 -5.8223 -0.3235 14 7 4.3282 -6.9944 -0.4321 15 6 3.8924 -8.0100 -1.2036 16 8 2.8032 -7.9421 -1.7397 17 7 4.6639 -9.1007 -1.3810 18 8 4.2058 -10.1678 -2.1911 19 6 5.1248 -11.2576 -2.2912 20 6 4.5287 -12.3470 -3.1849 21 8 4.3886 -11.8472 -4.5163 22 6 4.2049 -4.5926 -0.2057 23 6 3.4575 -3.4374 -0.0985 24 1 -0.4850 0.8401 0.0004 25 1 0.3562 -4.7873 -0.2217 26 1 1.6886 -6.8455 -0.4245 27 1 5.1671 -7.0755 0.0479 28 1 5.5330 -9.1547 -0.9536 29 1 6.0612 -10.9048 -2.7233 30 1 5.3139 -11.6658 -1.2984 31 1 5.1889 -13.2144 -3.1900 32 1 3.5507 -12.6371 -2.8010 33 1 4.0159 -12.4862 -5.1391 34 1 5.2837 -4.5404 -0.1979 35 1 3.9512 -2.4812 -0.0074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324536698.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:07 Heat of formation + Delta-G solvation = -55.506555 kcal Electronic energy + Delta-G solvation = -20852.524688 eV Core-core repulsion = 17240.784344 eV Total energy + Delta-G solvation = -3611.740344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18476 -38.79634 -38.11857 -36.81719 -36.14746 -34.01077 -32.45177 -31.97494 -30.15828 -29.50051 -27.45255 -25.27518 -23.11539 -22.36487 -21.88264 -20.56482 -18.76384 -18.41353 -18.01920 -17.78655 -17.07856 -16.12845 -15.82383 -15.23379 -14.98175 -14.51909 -14.49941 -14.22511 -14.07655 -13.52043 -13.43923 -12.98845 -12.77910 -12.49899 -12.01815 -11.81765 -11.54780 -11.51703 -11.30663 -10.98877 -10.70629 -10.53664 -10.43473 -9.92439 -9.61290 -9.20720 -9.01653 -8.65844 -8.14608 -6.88238 -6.40080 -3.98131 1.46549 2.22208 2.31774 3.15105 3.16579 3.21235 3.34404 3.71456 3.81371 4.00768 4.26641 4.50737 4.62987 4.64234 4.84237 5.04812 5.13836 5.20532 5.39329 5.59298 5.82334 6.13194 6.24497 6.28158 6.52490 6.74606 6.89062 6.94912 7.14969 7.18244 7.25692 7.28829 7.48070 7.84374 8.00099 8.04542 8.70296 9.05269 9.76443 10.78006 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046780 B = 0.002654 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.398837 B =10546.598095 C =10706.705269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.147 3.853 11 C -0.177 4.177 12 C -0.066 4.066 13 C 0.054 3.946 14 N -0.665 5.665 15 C 0.715 3.285 16 O -0.554 6.554 17 N -0.619 5.619 18 O -0.118 6.118 19 C 0.030 3.970 20 C 0.085 3.915 21 O -0.565 6.565 22 C -0.089 4.089 23 C -0.220 4.220 24 H 0.270 0.730 25 H 0.121 0.879 26 H 0.132 0.868 27 H 0.399 0.601 28 H 0.400 0.600 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.383 0.617 34 H 0.111 0.889 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.757 -21.187 -1.443 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.093 3.907 11 C -0.197 4.197 12 C -0.086 4.086 13 C -0.039 4.039 14 N -0.317 5.317 15 C 0.416 3.584 16 O -0.428 6.428 17 N -0.324 5.324 18 O -0.121 6.121 19 C -0.048 4.048 20 C 0.006 3.994 21 O -0.371 6.371 22 C -0.110 4.110 23 C -0.240 4.240 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.149 0.851 27 H 0.233 0.767 28 H 0.239 0.761 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.129 0.871 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.367 -20.418 -1.781 23.938 hybrid contribution 1.500 -0.078 0.174 1.512 sum 13.866 -20.496 -1.608 24.798 Atomic orbital electron populations 1.70050 1.05942 1.27602 1.46152 1.25286 0.95840 0.98820 0.96660 0.85714 0.78860 0.80159 0.78676 1.19915 1.20324 1.19248 1.21309 0.91763 0.80898 1.52769 0.89080 1.83997 1.34219 1.11365 1.78470 1.19426 0.90253 0.88139 0.92886 1.20155 0.99781 0.89791 1.10002 1.20803 0.91865 0.98325 0.97652 1.16992 0.90368 0.83401 1.13095 1.42029 1.25971 1.14439 1.49250 1.15378 0.84082 0.78728 0.80174 1.90961 1.20309 1.79179 1.52339 1.46138 1.20759 1.13130 1.52423 1.90681 1.35871 1.21898 1.63615 1.23085 0.94624 0.87834 0.99280 1.22073 1.00636 0.93728 0.83003 1.86596 1.87105 1.44123 1.19272 1.20437 0.98419 0.90498 1.01640 1.20949 0.93666 0.98275 1.11090 0.92056 0.86066 0.85052 0.76743 0.76056 0.91271 0.90631 0.91146 0.92130 0.76928 0.87125 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.13 9.76 -0.03 0.00 -5.13 16 10 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 11 C -0.18 -4.02 9.99 -39.42 -0.39 -4.41 16 12 C -0.07 -1.36 8.69 -39.41 -0.34 -1.71 16 13 C 0.05 0.98 6.30 -83.61 -0.53 0.45 16 14 N -0.67 -9.41 5.35 -14.18 -0.08 -9.48 16 15 C 0.72 11.53 8.55 -86.92 -0.74 10.78 16 16 O -0.55 -11.80 14.19 -12.86 -0.18 -11.98 16 17 N -0.62 -7.38 6.39 27.63 0.18 -7.21 16 18 O -0.12 -1.55 11.07 -34.80 -0.39 -1.94 16 19 C 0.03 0.23 6.61 37.16 0.25 0.47 16 20 C 0.08 0.54 7.43 37.16 0.28 0.82 16 21 O -0.57 -4.98 13.62 -40.08 -0.55 -5.53 16 22 C -0.09 -1.62 9.96 -39.42 -0.39 -2.01 16 23 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 24 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.12 2.67 8.06 -52.49 -0.42 2.24 16 26 H 0.13 2.71 6.22 -52.49 -0.33 2.38 16 27 H 0.40 3.79 8.84 -40.82 -0.36 3.43 16 28 H 0.40 2.85 8.56 -40.82 -0.35 2.50 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 1.46 9.12 45.56 0.42 1.88 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.13 2.79 5.63 -52.48 -0.30 2.50 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -38.47 313.79 -5.71 -44.19 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -2.86 Total: 8.67 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.30 Total: -7.09 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.86 Total: -41.54 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -1.11 Total: -24.58 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -38.47 -5.71 -44.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324536698.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.321 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds