Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30858 * 126.07125 * 2 1 4 4 N 1.28440 * 110.92969 * 179.73609 * 3 2 1 5 5 C 1.46499 * 125.19391 * 180.28070 * 4 3 2 6 6 C 1.36607 * 109.61755 * 0.46646 * 4 3 2 7 7 C 1.47165 * 126.88263 * 179.81408 * 6 4 3 8 8 O 1.21621 * 119.99518 * 98.61870 * 7 6 4 9 9 N 1.34772 * 119.99767 * 278.34088 * 7 6 4 10 10 C 1.46501 * 120.00102 * 175.10936 * 9 7 6 11 11 H 1.09003 * 109.46701 * 324.99835 * 10 9 7 12 12 C 1.53002 * 109.47222 * 84.99491 * 10 9 7 13 13 C 1.50696 * 109.47199 * 205.00180 * 10 9 7 14 14 H 1.07993 * 120.00210 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00131 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 119.99999 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47296 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47427 * 119.99652 * 17 15 13 20 20 H 1.48506 * 109.47193 * 239.99573 * 17 15 13 21 21 C 1.38404 * 106.22674 * 359.55481 * 6 4 3 22 22 N 1.48018 * 127.31523 * 180.22422 * 21 6 4 23 23 O 1.21804 * 119.99438 * 90.00105 * 22 21 6 24 24 O 1.21795 * 120.00100 * 269.99931 * 22 21 6 25 25 H 1.09002 * 109.47275 * 269.97369 * 1 2 3 26 26 H 1.09001 * 109.47462 * 29.97023 * 1 2 3 27 27 H 1.08999 * 109.47589 * 149.96941 * 1 2 3 28 28 H 1.08990 * 109.47493 * 274.96823 * 5 4 3 29 29 H 1.09006 * 109.47195 * 34.96780 * 5 4 3 30 30 H 1.09004 * 109.47252 * 154.96188 * 5 4 3 31 31 H 0.97001 * 120.00561 * 355.10765 * 9 7 6 32 32 H 1.09003 * 109.47002 * 60.00529 * 12 10 9 33 33 H 1.08994 * 109.47027 * 180.02562 * 12 10 9 34 34 H 1.08998 * 109.47263 * 300.00602 * 12 10 9 35 35 H 0.97000 * 120.00475 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2775 1.0577 0.0000 4 7 3.5173 0.7222 0.0055 5 6 4.6450 1.6573 0.0131 6 6 3.6239 -0.6397 -0.0009 7 6 4.8664 -1.4283 -0.0015 8 8 5.2924 -1.8925 1.0388 9 7 5.5290 -1.6408 -1.1556 10 6 6.8200 -2.3332 -1.1423 11 1 7.3670 -2.0646 -0.2385 12 6 6.5881 -3.8453 -1.1676 13 6 7.6202 -1.9273 -2.3531 14 1 7.2083 -1.2243 -3.0618 15 6 8.8780 -2.4543 -2.5565 16 7 9.3795 -3.3108 -1.6936 17 14 9.8697 -1.9518 -4.0575 18 1 9.0866 -0.9838 -4.8668 19 1 11.1409 -1.3196 -3.6222 20 1 10.1697 -3.1531 -4.8775 21 6 2.3293 -1.1290 -0.0006 22 7 1.9061 -2.5474 -0.0017 23 8 1.7326 -3.1318 1.0528 24 8 1.7315 -3.1301 -1.0568 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 4.8730 1.9598 -1.0089 29 1 4.3842 2.5364 0.6025 30 1 5.5168 1.1716 0.4514 31 1 5.1512 -1.3354 -1.9952 32 1 6.0411 -4.1139 -2.0714 33 1 7.5486 -4.3604 -1.1572 34 1 6.0093 -4.1388 -0.2919 35 1 10.2645 -3.6814 -1.8365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327859548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = 38.997590 kcal Electronic energy + Delta-G solvation = -22515.482783 eV Core-core repulsion = 18940.133198 eV Total energy + Delta-G solvation = -3575.349585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.32220 -41.68097 -39.15797 -36.35321 -35.17193 -34.73750 -32.78126 -31.85279 -30.24392 -29.20253 -27.37056 -25.43100 -25.22215 -23.61149 -21.64798 -20.78103 -19.83597 -18.97840 -18.67573 -17.92037 -17.14349 -16.81378 -16.28233 -15.63166 -15.52586 -14.68461 -14.22949 -13.95167 -13.74750 -13.47861 -13.12994 -12.81630 -12.74762 -12.61465 -11.93467 -11.60485 -11.53521 -11.29835 -11.12115 -11.03389 -10.98011 -10.95179 -10.49575 -10.39403 -9.91169 -9.76007 -9.51107 -9.25879 -8.76743 -8.34491 -6.28756 -4.40181 0.62355 0.93475 1.17541 1.78117 1.98269 2.68430 3.13866 3.20512 3.23694 3.32080 3.91051 4.19254 4.32982 4.55820 4.74748 4.78742 4.91081 5.04171 5.10986 5.21026 5.23253 5.35115 5.67339 6.08234 6.40587 6.62881 6.72936 6.92970 7.05601 7.23816 7.37425 7.47778 7.66921 7.72556 7.93534 8.19191 8.37469 8.67336 9.27596 10.77142 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.004996 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.358393 B = 5602.897885 C = 6193.405728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.089 3.911 3 N -0.266 5.266 4 N -0.252 5.252 5 C 0.082 3.918 6 C 0.067 3.933 7 C 0.556 3.444 8 O -0.512 6.512 9 N -0.680 5.680 10 C 0.264 3.736 11 H 0.053 0.947 12 C -0.151 4.151 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.879 5.879 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.125 4.125 22 N 0.052 4.948 23 O -0.127 6.127 24 O -0.131 6.131 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.395 0.605 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.017 0.983 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 9.627 1.088 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 N -0.097 5.097 4 N -0.038 5.038 5 C -0.057 4.057 6 C -0.068 4.068 7 C 0.335 3.665 8 O -0.387 6.387 9 N -0.328 5.328 10 C 0.164 3.836 11 H 0.071 0.929 12 C -0.209 4.209 13 C -0.578 4.578 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.516 5.516 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.206 1.206 21 C -0.219 4.219 22 N 0.584 4.416 23 O -0.351 6.351 24 O -0.354 6.354 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.228 0.772 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.036 0.964 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.536 11.225 1.860 16.203 hybrid contribution 0.394 -0.780 -1.171 1.461 sum -11.142 10.445 0.689 15.288 Atomic orbital electron populations 1.20307 0.84830 1.04396 1.04084 1.21764 0.97638 0.85174 1.02524 1.73296 0.89057 1.25454 1.21937 1.45621 1.05855 1.03454 1.48841 1.22529 0.84584 0.92592 1.05999 1.21744 0.95133 0.85575 1.04340 1.17029 0.81643 0.81669 0.86207 1.90903 1.65665 1.50289 1.31876 1.46718 1.23013 1.56348 1.06699 1.19013 0.76569 0.89058 0.98943 0.92949 1.22105 1.02696 0.98593 0.97536 1.21147 1.01037 1.27647 1.07968 0.91824 1.24880 0.97282 0.94479 0.96830 1.69900 1.17384 1.28995 1.35332 0.86333 0.79808 0.78535 0.82080 1.19705 1.20760 1.20644 1.21008 0.93468 0.83427 1.23972 1.42295 0.98059 1.00834 1.00395 1.94578 1.53049 1.66574 1.20926 1.94569 1.53316 1.66781 1.20776 0.89396 0.89195 0.90278 0.88074 0.87355 0.87486 0.77152 0.94915 0.88629 0.96354 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.45 36.00 0.38 -0.37 16 2 C 0.09 1.21 7.22 -82.47 -0.60 0.62 16 3 N -0.27 -3.58 11.90 33.63 0.40 -3.18 16 4 N -0.25 -3.45 3.75 -63.88 -0.24 -3.69 16 5 C 0.08 0.78 11.21 59.85 0.67 1.45 16 6 C 0.07 1.14 6.71 -82.05 -0.55 0.58 16 7 C 0.56 11.16 6.96 -12.64 -0.09 11.08 16 8 O -0.51 -12.21 16.77 5.26 0.09 -12.12 16 9 N -0.68 -13.72 5.06 -56.10 -0.28 -14.00 16 10 C 0.26 6.40 2.52 -69.08 -0.17 6.23 16 11 H 0.05 1.43 7.66 -51.93 -0.40 1.03 16 12 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 13 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -23.68 11.32 55.43 0.63 -23.05 16 17 Si 0.91 19.66 29.54 -169.99 -5.02 14.63 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 C -0.13 -2.09 6.90 -79.35 -0.55 -2.64 16 22 N 0.05 0.93 4.45 34.25 0.15 1.09 16 23 O -0.13 -2.38 19.26 -29.46 -0.57 -2.95 16 24 O -0.13 -2.39 19.25 -29.46 -0.57 -2.96 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.11 1.10 7.66 -51.93 -0.40 0.71 16 31 H 0.40 7.06 8.53 -40.82 -0.35 6.72 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 34 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -31.08 320.79 -5.49 -36.57 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.96 Total: 3.32 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.96 Total: 1.51 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.66 Total: -42.84 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.05 Total: -18.03 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.08 -5.49 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327859548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.565 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds