Wall clock time and date at job start Tue Mar 31 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30863 * 126.06833 * 2 1 4 4 N 1.28446 * 110.92599 * 179.74051 * 3 2 1 5 5 C 1.46500 * 125.18938 * 180.30437 * 4 3 2 6 6 C 1.36596 * 109.62044 * 0.46004 * 4 3 2 7 7 C 1.47162 * 126.88758 * 179.81379 * 6 4 3 8 8 O 1.21629 * 119.99776 * 99.33756 * 7 6 4 9 9 N 1.34773 * 120.00349 * 279.34085 * 7 6 4 10 10 C 1.46496 * 120.00055 * 174.87195 * 9 7 6 11 11 H 1.08997 * 109.46956 * 35.00741 * 10 9 7 12 12 C 1.52996 * 109.47468 * 275.00268 * 10 9 7 13 13 C 1.50704 * 109.46850 * 155.00245 * 10 9 7 14 14 H 1.07997 * 119.99898 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99785 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00140 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99709 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.46719 * 90.00496 * 17 15 13 19 19 H 1.48496 * 109.46899 * 210.00165 * 17 15 13 20 20 H 1.48493 * 109.47246 * 330.00261 * 17 15 13 21 21 C 1.38409 * 106.22931 * 359.55806 * 6 4 3 22 22 N 1.48018 * 127.31790 * 180.22483 * 21 6 4 23 23 O 1.21792 * 120.00275 * 90.00519 * 22 21 6 24 24 O 1.21802 * 119.99458 * 269.99849 * 22 21 6 25 25 H 1.08998 * 109.46680 * 269.97254 * 1 2 3 26 26 H 1.08996 * 109.47201 * 29.97257 * 1 2 3 27 27 H 1.08995 * 109.47087 * 149.97541 * 1 2 3 28 28 H 1.09002 * 109.46792 * 275.09617 * 5 4 3 29 29 H 1.08998 * 109.47669 * 35.10229 * 5 4 3 30 30 H 1.09005 * 109.47259 * 155.10491 * 5 4 3 31 31 H 0.97001 * 119.99483 * 354.88067 * 9 7 6 32 32 H 1.09007 * 109.46958 * 299.99921 * 12 10 9 33 33 H 1.09000 * 109.47015 * 180.02562 * 12 10 9 34 34 H 1.09002 * 109.47201 * 60.00017 * 12 10 9 35 35 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2775 1.0578 0.0000 4 7 3.5173 0.7223 0.0054 5 6 4.6450 1.6574 0.0134 6 6 3.6240 -0.6395 -0.0009 7 6 4.8664 -1.4282 -0.0016 8 8 5.2856 -1.9034 1.0366 9 7 5.5398 -1.6239 -1.1525 10 6 6.8331 -2.3120 -1.1366 11 1 6.8230 -3.0866 -0.3698 12 6 7.9430 -1.3047 -0.8295 13 6 7.0839 -2.9410 -2.4829 14 1 6.3533 -2.8381 -3.2715 15 6 8.2467 -3.6470 -2.7080 16 7 9.1366 -3.7718 -1.7478 17 14 8.5573 -4.4273 -4.3766 18 1 9.2687 -3.4602 -5.2505 19 1 9.3893 -5.6454 -4.2062 20 1 7.2608 -4.7965 -4.9994 21 6 2.3293 -1.1290 -0.0006 22 7 1.9063 -2.5474 -0.0015 23 8 1.7327 -3.1318 1.0529 24 8 1.7316 -3.1300 -1.0568 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 4.8715 1.9621 -1.0083 29 1 4.3851 2.5351 0.6052 30 1 5.5176 1.1708 0.4493 31 1 5.1682 -1.3090 -1.9913 32 1 7.9530 -0.5301 -1.5964 33 1 8.9052 -1.8166 -0.8182 34 1 7.7616 -0.8497 0.1442 35 1 9.9548 -4.2682 -1.9064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327859549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:39 Heat of formation + Delta-G solvation = 39.623424 kcal Electronic energy + Delta-G solvation = -22507.874048 eV Core-core repulsion = 18932.551601 eV Total energy + Delta-G solvation = -3575.322447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.32532 -41.65598 -39.16142 -36.32444 -35.18580 -34.74842 -32.76519 -31.84647 -30.25641 -29.23163 -27.37728 -25.46115 -25.22614 -23.62402 -21.61188 -20.82288 -19.81266 -18.97628 -18.64574 -17.91669 -17.13548 -16.83779 -16.23435 -15.71697 -15.44237 -14.66721 -14.28014 -13.96472 -13.85421 -13.38070 -13.10877 -12.82006 -12.76541 -12.64735 -11.99763 -11.60415 -11.50680 -11.29821 -11.11918 -10.99971 -10.98175 -10.94786 -10.54438 -10.39562 -9.91018 -9.76434 -9.52251 -9.26376 -8.75833 -8.33788 -6.26233 -4.36653 0.64811 0.92749 1.18336 1.77768 1.97930 2.67802 3.18515 3.24093 3.27222 3.33983 3.90106 4.23264 4.33425 4.54417 4.71882 4.74449 4.90985 5.05739 5.07423 5.21391 5.23337 5.34498 5.67459 6.07296 6.42902 6.53005 6.61031 6.83697 6.98243 7.18951 7.36449 7.50087 7.64158 7.75018 7.91325 8.19040 8.38654 8.69753 9.31100 10.79934 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.005123 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.020124 B = 5464.454662 C = 6062.704809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.089 3.911 3 N -0.266 5.266 4 N -0.254 5.254 5 C 0.082 3.918 6 C 0.067 3.933 7 C 0.557 3.443 8 O -0.513 6.513 9 N -0.680 5.680 10 C 0.261 3.739 11 H 0.056 0.944 12 C -0.148 4.148 13 C -0.539 4.539 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.124 4.124 22 N 0.051 4.949 23 O -0.127 6.127 24 O -0.130 6.130 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.395 0.605 32 H 0.030 0.970 33 H 0.097 0.903 34 H 0.013 0.987 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 11.678 1.318 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 N -0.097 5.097 4 N -0.039 5.039 5 C -0.057 4.057 6 C -0.068 4.068 7 C 0.335 3.665 8 O -0.387 6.387 9 N -0.328 5.328 10 C 0.161 3.839 11 H 0.073 0.927 12 C -0.206 4.206 13 C -0.577 4.577 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.519 5.519 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.217 4.217 22 N 0.584 4.416 23 O -0.351 6.351 24 O -0.353 6.353 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.228 0.772 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.467 13.289 2.097 17.046 hybrid contribution 0.071 -1.371 -1.241 1.850 sum -10.396 11.919 0.856 15.839 Atomic orbital electron populations 1.20309 0.84811 1.04413 1.04093 1.21770 0.97647 0.85176 1.02473 1.73298 0.89023 1.25447 1.21982 1.45592 1.05847 1.03414 1.49038 1.22510 0.84630 0.92626 1.05903 1.21739 0.95172 0.85550 1.04371 1.17032 0.81447 0.81751 0.86242 1.90905 1.66454 1.49510 1.31875 1.46693 1.22787 1.56423 1.06878 1.19021 0.75390 0.90647 0.98870 0.92661 1.22120 1.03514 0.98642 0.96336 1.21132 1.04917 1.34772 0.96871 0.91754 1.24872 0.95490 0.95542 0.97555 1.69875 1.09380 1.40508 1.32158 0.86373 0.78495 0.78841 0.83053 1.20467 1.20882 1.19603 1.21023 0.93464 0.83505 1.23739 1.42293 0.98119 1.00803 1.00426 1.94574 1.53065 1.66536 1.20939 1.94580 1.53233 1.66730 1.20732 0.89388 0.89196 0.90250 0.88159 0.87334 0.87615 0.77155 0.95053 0.88426 0.96778 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.45 36.01 0.38 -0.37 16 2 C 0.09 1.22 7.22 -82.47 -0.60 0.63 16 3 N -0.27 -3.55 11.90 33.64 0.40 -3.15 16 4 N -0.25 -3.42 3.75 -63.88 -0.24 -3.66 16 5 C 0.08 0.75 11.22 59.85 0.67 1.42 16 6 C 0.07 1.13 6.71 -82.06 -0.55 0.58 16 7 C 0.56 11.20 6.96 -12.64 -0.09 11.12 16 8 O -0.51 -12.28 16.74 5.25 0.09 -12.19 16 9 N -0.68 -13.72 5.06 -56.10 -0.28 -14.00 16 10 C 0.26 6.32 2.60 -69.08 -0.18 6.14 16 11 H 0.06 1.57 7.51 -51.93 -0.39 1.18 16 12 C -0.15 -3.33 9.26 37.16 0.34 -2.99 16 13 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -23.92 11.32 55.43 0.63 -23.29 16 17 Si 0.91 20.18 29.54 -169.99 -5.02 15.15 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.12 -2.09 6.90 -79.35 -0.55 -2.64 16 22 N 0.05 0.94 4.45 34.25 0.15 1.09 16 23 O -0.13 -2.43 19.25 -29.46 -0.57 -2.99 16 24 O -0.13 -2.42 19.25 -29.46 -0.57 -2.99 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 1.04 7.65 -51.93 -0.40 0.64 16 31 H 0.40 7.04 8.53 -40.82 -0.35 6.70 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -31.54 320.74 -5.49 -37.04 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.95 Total: 2.66 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.97 Total: 1.50 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.66 Total: -43.02 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.05 Total: -18.17 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.54 -5.49 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327859549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.661 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds