Wall clock time and date at job start Tue Mar 31 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30863 * 126.06833 * 2 1 4 4 N 1.28446 * 110.92599 * 179.74051 * 3 2 1 5 5 C 1.46500 * 125.18938 * 180.30437 * 4 3 2 6 6 C 1.36596 * 109.62044 * 0.46004 * 4 3 2 7 7 C 1.47162 * 126.88758 * 179.81379 * 6 4 3 8 8 O 1.21629 * 119.99776 * 99.33756 * 7 6 4 9 9 N 1.34773 * 120.00349 * 279.34085 * 7 6 4 10 10 C 1.46496 * 120.00055 * 174.87195 * 9 7 6 11 11 H 1.08997 * 109.46956 * 35.00741 * 10 9 7 12 12 C 1.52996 * 109.47468 * 275.00268 * 10 9 7 13 13 C 1.50704 * 109.46850 * 155.00245 * 10 9 7 14 14 H 1.07997 * 119.99898 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99785 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00140 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99709 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.46719 * 90.00496 * 17 15 13 19 19 H 1.48496 * 109.46899 * 210.00165 * 17 15 13 20 20 H 1.48493 * 109.47246 * 330.00261 * 17 15 13 21 21 C 1.38409 * 106.22931 * 359.55806 * 6 4 3 22 22 N 1.48018 * 127.31790 * 180.22483 * 21 6 4 23 23 O 1.21792 * 120.00275 * 90.00519 * 22 21 6 24 24 O 1.21802 * 119.99458 * 269.99849 * 22 21 6 25 25 H 1.08998 * 109.46680 * 269.97254 * 1 2 3 26 26 H 1.08996 * 109.47201 * 29.97257 * 1 2 3 27 27 H 1.08995 * 109.47087 * 149.97541 * 1 2 3 28 28 H 1.09002 * 109.46792 * 275.09617 * 5 4 3 29 29 H 1.08998 * 109.47669 * 35.10229 * 5 4 3 30 30 H 1.09005 * 109.47259 * 155.10491 * 5 4 3 31 31 H 0.97001 * 119.99483 * 354.88067 * 9 7 6 32 32 H 1.09007 * 109.46958 * 299.99921 * 12 10 9 33 33 H 1.09000 * 109.47015 * 180.02562 * 12 10 9 34 34 H 1.09002 * 109.47201 * 60.00017 * 12 10 9 35 35 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2775 1.0578 0.0000 4 7 3.5173 0.7223 0.0054 5 6 4.6450 1.6574 0.0134 6 6 3.6240 -0.6395 -0.0009 7 6 4.8664 -1.4282 -0.0016 8 8 5.2856 -1.9034 1.0366 9 7 5.5398 -1.6239 -1.1525 10 6 6.8331 -2.3120 -1.1366 11 1 6.8230 -3.0866 -0.3698 12 6 7.9430 -1.3047 -0.8295 13 6 7.0839 -2.9410 -2.4829 14 1 6.3533 -2.8381 -3.2715 15 6 8.2467 -3.6470 -2.7080 16 7 9.1366 -3.7718 -1.7478 17 14 8.5573 -4.4273 -4.3766 18 1 9.2687 -3.4602 -5.2505 19 1 9.3893 -5.6454 -4.2062 20 1 7.2608 -4.7965 -4.9994 21 6 2.3293 -1.1290 -0.0006 22 7 1.9063 -2.5474 -0.0015 23 8 1.7327 -3.1318 1.0529 24 8 1.7316 -3.1300 -1.0568 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 4.8715 1.9621 -1.0083 29 1 4.3851 2.5351 0.6052 30 1 5.5176 1.1708 0.4493 31 1 5.1682 -1.3090 -1.9913 32 1 7.9530 -0.5301 -1.5964 33 1 8.9052 -1.8166 -0.8182 34 1 7.7616 -0.8497 0.1442 35 1 9.9548 -4.2682 -1.9064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327859549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:39 Heat of formation + Delta-G solvation = 18.129870 kcal Electronic energy + Delta-G solvation = -22508.806079 eV Core-core repulsion = 18932.551601 eV Total energy + Delta-G solvation = -3576.254477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.49887 -43.05854 -40.84989 -37.78034 -37.03789 -35.75901 -34.60631 -33.23211 -31.06751 -31.01440 -28.67583 -27.42238 -26.23539 -25.14720 -22.96196 -22.43564 -21.36719 -20.30988 -20.08353 -19.40090 -18.41161 -18.13609 -17.91377 -17.27639 -16.95587 -16.38657 -15.91266 -15.19058 -14.71668 -14.61853 -14.52222 -14.07096 -13.86503 -13.61353 -13.49375 -13.15193 -13.01057 -12.97699 -12.82246 -12.80019 -12.43813 -12.38141 -12.30585 -12.21211 -11.58512 -11.23488 -11.05573 -10.69883 -10.54384 -10.16949 -8.24685 -6.42625 -0.82218 -0.35882 -0.08675 0.67580 0.69875 1.24002 1.43354 1.45780 1.55567 1.85551 2.38790 2.82811 3.06550 3.11556 3.25146 3.57284 3.94818 4.10812 4.24049 4.41326 4.50390 4.57145 4.63302 4.78274 4.87215 4.92806 4.98944 5.12959 5.16101 5.35520 5.54499 5.71883 5.97928 6.25096 6.26205 6.39798 6.58790 6.87600 7.29798 8.81486 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.005123 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.020124 B = 5464.454662 C = 6062.704809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.094 3.906 3 N -0.251 5.251 4 N -0.235 5.235 5 C 0.067 3.933 6 C 0.044 3.956 7 C 0.565 3.435 8 O -0.558 6.558 9 N -0.672 5.672 10 C 0.267 3.733 11 H 0.004 0.996 12 C -0.133 4.133 13 C -0.553 4.553 14 H 0.071 0.929 15 C 0.022 3.978 16 N -0.912 5.912 17 Si 0.971 3.029 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.141 4.141 22 N 0.051 4.949 23 O -0.152 6.152 24 O -0.133 6.133 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.409 0.591 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 13.795 -0.095 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 N -0.083 5.083 4 N -0.020 5.020 5 C -0.070 4.070 6 C -0.092 4.092 7 C 0.346 3.654 8 O -0.436 6.436 9 N -0.320 5.320 10 C 0.165 3.835 11 H 0.022 0.978 12 C -0.192 4.192 13 C -0.591 4.591 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.796 3.204 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.235 4.235 22 N 0.581 4.419 23 O -0.372 6.372 24 O -0.358 6.358 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.159 0.841 30 H 0.114 0.886 31 H 0.245 0.755 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.623 15.440 0.693 19.338 hybrid contribution 0.403 -1.958 -0.783 2.147 sum -11.220 13.482 -0.090 17.540 Atomic orbital electron populations 1.20531 0.81951 1.05726 1.05513 1.22395 0.99295 0.83693 1.01049 1.73371 0.88732 1.24734 1.21508 1.46034 1.06862 1.02317 1.46805 1.23002 0.83134 0.92575 1.08245 1.21111 0.93492 0.87134 1.07441 1.17230 0.81908 0.81055 0.85183 1.90877 1.68052 1.51317 1.33364 1.46391 1.21844 1.55981 1.07806 1.18658 0.77591 0.90291 0.96915 0.97820 1.21904 1.01459 0.98364 0.97445 1.21437 1.05187 1.35085 0.97368 0.91042 1.25711 0.95297 0.95948 1.00961 1.70012 1.09798 1.41130 1.34048 0.85352 0.78302 0.77891 0.78897 1.19165 1.21138 1.19283 1.21259 0.94225 0.82805 1.25260 1.42532 0.97660 1.01614 1.00071 1.94565 1.54119 1.67376 1.21090 1.94553 1.53076 1.67433 1.20738 0.87812 0.86544 0.90250 0.85494 0.84102 0.88556 0.75530 0.92938 0.90941 0.96031 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.45 71.24 0.74 -0.55 16 2 C 0.09 2.36 7.22 43.05 0.31 2.67 16 3 N -0.25 -5.94 11.90 -47.49 -0.57 -6.50 16 4 N -0.23 -5.78 3.75 -356.01 -1.33 -7.11 16 5 C 0.07 1.03 11.22 127.77 1.43 2.46 16 6 C 0.04 1.46 6.71 40.79 0.27 1.74 16 7 C 0.57 23.04 6.96 86.59 0.60 23.64 16 8 O -0.56 -27.72 16.74 -4.12 -0.07 -27.79 16 9 N -0.67 -27.22 5.06 -449.64 -2.28 -29.50 16 10 C 0.27 13.23 2.60 44.25 0.12 13.34 16 11 H 0.00 0.23 7.51 -2.39 -0.02 0.21 16 12 C -0.13 -6.05 9.26 71.98 0.67 -5.39 16 13 C -0.55 -28.37 8.73 25.60 0.22 -28.15 16 14 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 15 C 0.02 1.14 5.30 84.66 0.45 1.59 16 16 N -0.91 -50.32 11.32 21.45 0.24 -50.07 16 17 Si 0.97 41.05 29.54 68.60 2.03 43.07 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 C -0.14 -4.65 6.90 36.76 0.25 -4.39 16 22 N 0.05 1.89 4.45 -45.54 -0.20 1.69 16 23 O -0.15 -5.92 19.25 18.90 0.36 -5.56 16 24 O -0.13 -4.97 19.25 18.88 0.36 -4.61 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.72 7.65 -2.38 -0.02 1.71 16 31 H 0.41 14.26 8.53 -92.71 -0.79 13.47 16 32 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.27 14.01 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -69.91 320.74 3.97 -65.94 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.35 Total: 13.48 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.07 Total: 6.96 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.14 Total: -91.50 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: 0.66 Total: -37.95 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -69.91 3.97 -65.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327859549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.066 kcal (2) G-P(sol) polarization free energy of solvation -69.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds