Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47690 * 2 1 4 4 N 1.46499 * 109.46967 * 239.99716 * 2 1 3 5 5 C 1.34782 * 119.99914 * 85.00795 * 4 2 1 6 6 O 1.21583 * 119.99625 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99880 * 180.02562 * 5 4 2 8 8 C 1.47577 * 134.49071 * 180.02562 * 7 5 4 9 9 C 1.53947 * 86.11678 * 155.35009 * 8 7 5 10 10 O 1.42893 * 113.74417 * 269.15203 * 9 8 7 11 11 C 1.50710 * 113.73764 * 137.94968 * 9 8 7 12 12 H 1.07994 * 120.00413 * 6.94299 * 11 9 8 13 13 C 1.37873 * 119.99460 * 186.94705 * 11 9 8 14 14 N 1.31516 * 119.99596 * 178.17803 * 13 11 9 15 15 Si 1.86799 * 120.00523 * 358.16911 * 13 11 9 16 16 H 1.48502 * 109.47432 * 270.00789 * 15 13 11 17 17 H 1.48509 * 109.46693 * 30.00560 * 15 13 11 18 18 H 1.48498 * 109.47418 * 149.99892 * 15 13 11 19 19 C 1.47812 * 134.45776 * 359.85643 * 7 5 4 20 20 C 1.53004 * 109.46948 * 120.00080 * 2 1 3 21 21 F 1.39897 * 109.47065 * 179.97438 * 20 2 1 22 22 F 1.39898 * 109.46908 * 299.99851 * 20 2 1 23 23 F 1.39893 * 109.47207 * 59.99760 * 20 2 1 24 24 H 1.09006 * 109.46837 * 59.99893 * 1 2 3 25 25 H 1.08991 * 109.47391 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46909 * 300.00113 * 1 2 3 27 27 H 0.97001 * 119.99888 * 264.99587 * 4 2 1 28 28 H 1.08996 * 113.77269 * 41.04774 * 8 7 5 29 29 H 1.09002 * 113.76345 * 269.65063 * 8 7 5 30 30 H 0.96694 * 114.00533 * 162.49871 * 10 9 8 31 31 H 0.96997 * 120.00619 * 358.27359 * 14 13 11 32 32 H 1.09000 * 113.76478 * 90.38273 * 19 7 5 33 33 H 1.09001 * 113.83768 * 318.92464 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8577 1.1613 -2.4118 7 7 2.5959 -0.6538 -3.4577 8 6 2.8545 -0.2484 -4.8529 9 6 3.8492 -1.4224 -4.8994 10 8 5.1812 -1.0630 -4.5273 11 6 3.7907 -2.2169 -6.1788 12 1 3.1765 -1.8755 -6.9988 13 6 4.5212 -3.3796 -6.3021 14 7 4.4423 -4.0918 -7.4049 15 14 5.6231 -3.9434 -4.9030 16 1 6.9799 -3.3658 -5.0779 17 1 5.0536 -3.4868 -3.6097 18 1 5.7115 -5.4257 -4.9090 19 6 3.0294 -2.0363 -3.7504 20 6 2.0400 -0.7213 1.2493 21 9 3.4389 -0.7218 1.2490 22 9 1.5736 -0.0618 2.3915 23 9 1.5736 -2.0402 1.2493 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6318 -1.1525 28 1 3.3253 0.7303 -4.9460 29 1 1.9961 -0.3734 -5.5130 30 1 5.7417 -1.8162 -4.2957 31 1 3.8513 -3.8125 -8.1215 32 1 2.2225 -2.6880 -4.0856 33 1 3.6395 -2.4823 -2.9649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330234850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = -185.689525 kcal Electronic energy + Delta-G solvation = -23153.888428 eV Core-core repulsion = 18994.646187 eV Total energy + Delta-G solvation = -4159.242241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.37303 -47.88394 -47.82203 -40.13235 -38.32711 -35.56337 -34.41140 -32.67425 -31.32965 -28.38986 -26.64520 -25.73793 -24.86934 -22.23047 -20.64434 -19.58812 -18.70868 -18.60720 -18.33688 -17.97116 -17.00599 -16.23316 -15.79220 -15.43351 -14.85280 -14.75101 -14.44856 -14.27054 -14.15569 -13.99420 -13.98477 -13.75605 -13.50721 -13.20317 -12.78534 -12.65059 -12.31368 -12.11321 -12.07888 -11.53174 -11.44143 -10.91297 -10.45426 -10.13752 -9.76600 -9.57019 -9.35854 -8.91528 -8.71996 -8.07696 -6.73817 -4.50856 2.24935 2.62168 3.03587 3.13085 3.29210 3.35625 3.47233 3.80708 3.82799 4.14242 4.15439 4.67747 4.73027 4.83012 5.12918 5.29338 5.45049 5.48451 5.85121 5.86861 5.94862 6.06024 6.20717 6.24846 6.27372 6.52826 7.25933 7.49089 8.04238 8.30263 8.43238 8.55016 8.76368 9.25129 10.62168 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.005000 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.215261 B = 5598.515726 C = 6128.116939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 H 0.129 0.871 4 N -0.744 5.744 5 C 0.732 3.268 6 O -0.598 6.598 7 N -0.651 5.651 8 C 0.150 3.850 9 C 0.198 3.802 10 O -0.555 6.555 11 C -0.607 4.607 12 H 0.072 0.928 13 C 0.036 3.964 14 N -0.892 5.892 15 Si 1.037 2.963 16 H -0.274 1.274 17 H -0.274 1.274 18 H -0.281 1.281 19 C 0.059 3.941 20 C 0.446 3.554 21 F -0.176 7.176 22 F -0.175 7.175 23 F -0.180 7.180 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.401 0.599 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.353 0.647 31 H 0.274 0.726 32 H 0.093 0.907 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 3.164 15.812 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.147 0.853 4 N -0.402 5.402 5 C 0.435 3.565 6 O -0.478 6.478 7 N -0.388 5.388 8 C 0.028 3.972 9 C 0.157 3.843 10 O -0.364 6.364 11 C -0.645 4.645 12 H 0.090 0.910 13 C -0.171 4.171 14 N -0.524 5.524 15 Si 0.866 3.134 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.208 1.208 19 C -0.064 4.064 20 C 0.391 3.609 21 F -0.158 7.158 22 F -0.157 7.157 23 F -0.161 7.161 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.236 0.764 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.134 3.525 16.258 17.410 hybrid contribution -0.725 -0.063 -0.048 0.729 sum -5.859 3.462 16.210 17.580 Atomic orbital electron populations 1.22259 0.91859 1.03955 1.04623 1.21800 0.97129 0.98482 0.80760 0.85279 1.44808 1.73237 1.13925 1.08191 1.15274 0.77488 0.84336 0.79363 1.90878 1.58207 1.14274 1.84427 1.49333 1.67027 1.13603 1.08857 1.23168 0.96606 0.99651 0.77788 1.20543 0.80041 0.91746 0.91959 1.86490 1.23420 1.36385 1.90110 1.22247 1.32859 1.09308 1.00109 0.90981 1.25799 0.97108 0.93159 1.01071 1.70771 1.36290 1.39655 1.05724 0.84211 0.76960 0.77417 0.74762 1.20054 1.20090 1.20763 1.24766 0.98746 0.84029 0.98888 1.20782 0.75939 0.77870 0.86276 1.93234 1.29462 1.96331 1.96739 1.93192 1.88477 1.80717 1.53309 1.93189 1.88408 1.37770 1.96743 0.89464 0.91091 0.90370 0.76376 0.90644 0.89152 0.79721 0.91579 0.88883 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.24 37.16 0.34 -1.34 16 2 C 0.13 1.50 2.55 -67.93 -0.17 1.32 16 3 H 0.13 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.74 -10.67 4.98 -58.67 -0.29 -10.96 16 5 C 0.73 13.51 8.73 -86.91 -0.76 12.75 16 6 O -0.60 -12.59 16.73 5.29 0.09 -12.50 16 7 N -0.65 -12.52 3.61 -183.89 -0.66 -13.19 16 8 C 0.15 3.06 8.23 -2.97 -0.02 3.03 16 9 C 0.20 4.37 1.06 -90.85 -0.10 4.28 16 10 O -0.55 -12.56 13.26 -35.23 -0.47 -13.03 16 11 C -0.61 -15.33 9.05 -34.44 -0.31 -15.65 16 12 H 0.07 1.94 8.04 -52.49 -0.42 1.52 16 13 C 0.04 0.94 5.47 -17.82 -0.10 0.84 16 14 N -0.89 -24.98 13.70 55.43 0.76 -24.22 16 15 Si 1.04 21.80 24.78 -169.99 -4.21 17.58 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.27 -5.02 4.72 56.52 0.27 -4.75 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.06 1.11 6.69 -2.85 -0.02 1.09 16 20 C 0.45 4.94 2.75 37.16 0.10 5.04 16 21 F -0.18 -2.22 17.23 2.25 0.04 -2.18 16 22 F -0.18 -1.83 16.80 2.25 0.04 -1.79 16 23 F -0.18 -1.99 16.44 2.25 0.04 -1.95 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 26 H 0.08 0.63 7.80 -51.93 -0.41 0.22 16 27 H 0.40 5.28 7.92 -40.82 -0.32 4.95 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 30 H 0.35 7.30 4.32 45.56 0.20 7.50 16 31 H 0.27 7.63 8.71 -40.82 -0.36 7.28 16 32 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 33 H 0.07 1.22 6.56 -51.93 -0.34 0.88 16 LS Contribution 291.43 15.07 4.39 4.39 Total: -1.00 -29.50 291.43 -4.38 -33.88 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -3.06 Total: 12.59 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -1.03 Total: 11.36 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.20 Total: -48.37 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.38 Total: -25.53 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.21 Total: 17.58 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.50 -4.38 -33.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330234850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.807 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds