Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.50706 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38239 * 119.99759 * 179.74218 * 5 4 3 7 7 C 1.38234 * 119.99986 * 0.53603 * 6 5 4 8 8 C 1.50696 * 120.00147 * 179.76856 * 7 6 5 9 9 S 1.81399 * 109.46849 * 269.97287 * 8 7 6 10 10 O 1.42093 * 108.58058 * 294.48715 * 9 8 7 11 11 O 1.42101 * 108.57686 * 65.51196 * 9 8 7 12 12 C 1.81398 * 101.92321 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.47386 * 179.97438 * 12 9 8 14 14 H 1.07993 * 119.99817 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99735 * 179.97438 * 13 12 9 16 16 N 1.31511 * 120.00592 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99646 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47372 * 60.00435 * 17 15 13 19 19 H 1.48495 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47345 * 300.00297 * 17 15 13 21 21 C 1.38238 * 120.00067 * 359.73675 * 7 6 5 22 22 C 1.38235 * 120.00108 * 359.97438 * 21 7 6 23 23 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 24 24 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 25 25 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 27 27 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 28 28 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 29 29 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 30 30 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.99962 * 180.29747 * 6 5 4 32 32 H 1.09001 * 109.46945 * 29.97151 * 8 7 6 33 33 H 1.09003 * 109.47510 * 149.97817 * 8 7 6 34 34 H 1.09003 * 109.47518 * 300.00345 * 12 9 8 35 35 H 1.09004 * 109.47089 * 59.99720 * 12 9 8 36 36 H 0.96993 * 120.00410 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.00559 * 180.02562 * 21 7 6 38 38 H 1.07999 * 120.00165 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2377 1.4484 1.1980 6 6 5.6201 1.4430 1.1986 7 6 6.3117 1.4428 0.0017 8 6 7.8187 1.4422 0.0022 9 16 8.4240 3.1522 0.0019 10 8 8.0492 3.7649 -1.2242 11 8 8.0483 3.7657 1.2274 12 6 10.2222 2.9133 0.0034 13 6 10.9073 4.2555 0.0027 14 1 10.3198 5.1617 0.0018 15 6 12.2843 4.3266 0.0041 16 7 12.9998 3.2232 0.0057 17 14 13.1336 5.9904 0.0039 18 1 12.7339 6.7504 1.2156 19 1 14.6056 5.7947 0.0050 20 1 12.7364 6.7488 -1.2095 21 6 5.6210 1.4426 -1.1958 22 6 4.2387 1.4420 -1.1963 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6973 1.4526 2.1331 31 1 6.1597 1.4427 2.1341 32 1 8.1815 0.9285 0.8925 33 1 8.1822 0.9280 -0.8875 34 1 10.5140 2.3564 0.8939 35 1 10.5153 2.3556 -0.8861 36 1 13.9684 3.2732 0.0071 37 1 6.1613 1.4421 -2.1309 38 1 3.6990 1.4423 -2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332060299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = -76.311230 kcal Electronic energy + Delta-G solvation = -19322.520150 eV Core-core repulsion = 16256.170862 eV Total energy + Delta-G solvation = -3066.349288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.51980 -35.99271 -35.61975 -35.02200 -33.34568 -32.48182 -30.89322 -29.15273 -28.57155 -25.26498 -23.44207 -22.71725 -21.95064 -20.60511 -18.03170 -16.99871 -16.21698 -15.96982 -15.82431 -15.30556 -15.12750 -14.84557 -14.52566 -14.16353 -13.84295 -13.51437 -13.37358 -12.60070 -12.51662 -12.42545 -12.19743 -12.13920 -12.06331 -11.47848 -11.39598 -11.15673 -11.07683 -11.03442 -10.92232 -10.87446 -10.77550 -10.63683 -10.38566 -9.82821 -9.17226 -8.87386 -8.70263 -8.34246 -6.33008 -4.42490 0.76643 1.45564 1.48493 3.25094 3.26857 3.32304 3.75838 3.82325 4.22135 4.39727 4.61786 4.61875 4.71732 4.86086 4.94570 4.97105 5.05817 5.05934 5.24206 5.27629 5.48135 5.49691 5.55515 5.59809 5.67027 5.67723 5.76819 5.92100 6.03809 6.09739 6.10996 6.43154 6.60052 6.61286 6.64570 6.69115 7.02149 7.48110 7.75152 8.59407 9.24493 10.78872 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.054266 B = 0.003236 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.853372 B = 8651.178804 C = 8681.651270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.086 4.086 5 C -0.117 4.117 6 C -0.103 4.103 7 C -0.079 4.079 8 C -0.589 4.589 9 S 2.392 3.608 10 O -0.953 6.953 11 O -0.953 6.953 12 C -0.404 4.404 13 C -0.530 4.530 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.882 5.882 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.103 4.103 22 C -0.117 4.117 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.269 0.731 37 H 0.130 0.870 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 -8.395 -0.007 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.117 4.117 4 C -0.086 4.086 5 C -0.135 4.135 6 C -0.122 4.122 7 C -0.080 4.080 8 C -0.712 4.712 9 S 2.577 3.423 10 O -0.950 6.950 11 O -0.950 6.950 12 C -0.538 4.538 13 C -0.568 4.568 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.122 4.122 22 C -0.135 4.135 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.147 0.853 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.518 -7.730 -0.008 20.067 hybrid contribution 1.094 -0.121 0.001 1.101 sum -17.424 -7.851 -0.006 19.111 Atomic orbital electron populations 1.21791 0.95773 1.01608 1.01845 1.21515 0.95527 0.96183 1.02439 1.20635 0.90858 0.97294 1.02961 1.19918 0.95620 0.99803 0.93268 1.20983 0.93826 1.01073 0.97617 1.21160 0.94452 0.98904 0.97707 1.19071 0.92302 1.02536 0.94131 1.29617 1.00980 1.29025 1.11593 1.09094 0.81266 0.76704 0.75199 1.93468 1.83548 1.72262 1.45713 1.93469 1.83537 1.72236 1.45756 1.27533 1.13023 1.06639 1.06643 1.20325 0.92281 0.89111 1.55129 0.91044 1.24935 0.96920 0.97713 0.93563 1.69932 1.06614 1.27456 1.47867 0.86412 0.78077 0.82863 0.79510 1.19398 1.20737 1.19404 1.21159 0.94462 0.98901 0.97701 1.20983 0.93820 1.01079 0.97622 0.92701 0.92709 0.92758 0.91846 0.91847 0.90975 0.90970 0.85847 0.85251 0.84659 0.84662 0.89698 0.89701 0.92154 0.85251 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 3 C -0.08 -0.72 5.35 -27.88 -0.15 -0.87 16 4 C -0.09 -1.03 5.13 -104.62 -0.54 -1.57 16 5 C -0.12 -1.49 9.70 -39.58 -0.38 -1.88 16 6 C -0.10 -1.52 9.70 -39.58 -0.38 -1.90 16 7 C -0.08 -1.25 5.14 -104.62 -0.54 -1.79 16 8 C -0.59 -9.12 5.93 36.00 0.21 -8.91 16 9 S 2.39 50.07 4.62 -107.50 -0.50 49.57 16 10 O -0.95 -22.46 18.10 -57.83 -1.05 -23.51 16 11 O -0.95 -22.47 18.10 -57.83 -1.05 -23.51 16 12 C -0.40 -9.57 5.56 36.01 0.20 -9.37 16 13 C -0.53 -14.73 9.13 -34.44 -0.31 -15.05 16 14 H 0.07 1.98 7.71 -52.49 -0.40 1.57 16 15 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 16 N -0.88 -24.87 13.29 55.43 0.74 -24.14 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.10 -1.52 9.70 -39.58 -0.38 -1.90 16 22 C -0.12 -1.49 9.70 -39.58 -0.38 -1.88 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.14 1.77 8.09 -51.92 -0.42 1.35 16 33 H 0.14 1.77 8.09 -51.92 -0.42 1.35 16 34 H 0.08 1.95 8.14 -51.92 -0.42 1.53 16 35 H 0.08 1.95 8.14 -51.92 -0.42 1.53 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -33.90 338.88 -10.18 -44.08 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.87 Total: 1.17 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: -2.55 Total: -44.88 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.74 Total: -24.14 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -2.09 Total: -47.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 50.07 SS G_CDS: -0.50 Total: 49.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.90 -10.18 -44.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332060299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.230 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds