Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47023 * 2 1 4 4 N 1.33668 * 126.27521 * 90.03160 * 3 2 1 5 5 C 1.30628 * 109.00871 * 179.97438 * 4 3 2 6 6 O 1.33709 * 109.17055 * 359.97438 * 5 4 3 7 7 C 1.35353 * 107.67667 * 359.75271 * 6 5 4 8 8 C 1.46583 * 126.64749 * 180.24342 * 7 6 5 9 9 O 1.21734 * 119.99770 * 179.01735 * 8 7 6 10 10 N 1.34778 * 120.00056 * 359.01470 * 8 7 6 11 11 C 1.36865 * 119.99546 * 174.63022 * 10 8 7 12 12 H 1.08001 * 119.99346 * 165.27069 * 11 10 8 13 13 C 1.39023 * 120.00245 * 345.26162 * 11 10 8 14 14 N 1.31384 * 119.99726 * 104.25783 * 13 11 10 15 15 Si 1.86799 * 120.00267 * 284.25563 * 13 11 10 16 16 H 1.48497 * 109.47136 * 89.99862 * 15 13 11 17 17 H 1.48498 * 109.47187 * 209.99869 * 15 13 11 18 18 H 1.48503 * 109.46871 * 330.00163 * 15 13 11 19 19 C 1.46491 * 120.00233 * 354.62950 * 10 8 7 20 20 C 1.50707 * 109.46766 * 82.95399 * 19 10 8 21 21 O 1.20825 * 120.00172 * 359.97438 * 20 19 10 22 22 O 1.34237 * 119.99475 * 180.02562 * 20 19 10 23 23 C 1.45205 * 116.99360 * 180.02562 * 22 20 19 24 24 H 1.08993 * 109.47771 * 59.99657 * 1 2 3 25 25 H 1.08999 * 109.47244 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46864 * 299.99306 * 1 2 3 27 27 H 1.08998 * 109.46595 * 240.00096 * 2 1 3 28 28 H 1.09002 * 109.47195 * 120.00375 * 2 1 3 29 29 H 1.08000 * 125.42171 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99668 * 185.00825 * 14 13 11 31 31 H 1.08998 * 109.47406 * 202.95007 * 19 10 8 32 32 H 1.08992 * 109.47414 * 322.95462 * 19 10 8 33 33 H 1.08990 * 109.47286 * 59.99658 * 23 22 20 34 34 H 1.08999 * 109.46593 * 179.97438 * 23 22 20 35 35 H 1.09000 * 109.46899 * 299.99636 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2965 2.1662 1.0776 5 6 2.7126 3.3422 0.6899 6 8 2.7276 3.3840 -0.6465 7 6 2.3076 2.1799 -1.1001 8 6 2.1709 1.7720 -2.5013 9 8 1.7966 0.6461 -2.7737 10 7 2.4596 2.6434 -3.4881 11 6 2.4385 2.2310 -4.7930 12 1 2.4321 2.9602 -5.5897 13 6 2.4254 0.8736 -5.0930 14 7 1.3131 0.2999 -5.4927 15 14 3.9893 -0.1346 -4.9277 16 1 4.0758 -0.6924 -3.5542 17 1 3.9683 -1.2457 -5.9128 18 1 5.1669 0.7328 -5.1848 19 6 2.7960 4.0318 -3.1641 20 6 4.2542 4.1222 -2.7945 21 8 4.9418 3.1287 -2.8007 22 8 4.7889 5.3065 -2.4575 23 6 6.1997 5.3187 -2.1137 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.9997 4.1518 1.3445 30 1 1.2853 -0.6597 -5.6321 31 1 2.6007 4.6646 -4.0299 32 1 2.1870 4.3668 -2.3245 33 1 6.7837 4.9647 -2.9631 34 1 6.5035 6.3349 -1.8625 35 1 6.3707 4.6659 -1.2578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335805893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = -61.150416 kcal Electronic energy + Delta-G solvation = -23649.512158 eV Core-core repulsion = 20037.527078 eV Total energy + Delta-G solvation = -3611.985080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.73853 -40.01725 -38.27028 -36.05149 -35.25387 -34.01272 -32.88830 -32.20271 -29.01246 -28.76910 -26.62906 -25.26149 -23.42829 -22.63020 -21.30821 -20.59177 -19.53055 -17.75852 -17.25800 -16.74724 -16.23881 -16.12602 -15.87943 -15.38735 -14.82795 -14.45104 -14.05537 -13.58838 -13.54694 -13.12957 -12.88724 -12.67979 -12.60445 -12.25902 -12.05793 -11.82091 -11.58727 -11.10852 -10.95219 -10.68332 -10.53139 -10.48536 -10.46238 -10.23135 -10.10822 -9.98425 -9.02625 -8.60091 -8.17170 -7.88461 -7.02941 -3.62736 1.59307 2.73984 2.92949 3.13374 3.16812 3.35508 3.46162 3.56421 4.07076 4.30758 4.52425 4.59311 4.76892 5.25663 5.32560 5.33728 5.38994 5.43424 5.58245 5.68391 5.80016 5.90226 5.95581 6.00758 6.17631 6.37930 6.46860 6.71147 6.74358 6.78544 6.97676 7.18767 7.61058 8.18766 8.24984 8.44370 8.86399 9.13980 9.86854 9.95278 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.011446 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.311145 B = 2445.757911 C = 4098.887339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C 0.016 3.984 4 N -0.483 5.483 5 C 0.136 3.864 6 O -0.207 6.207 7 C -0.043 4.043 8 C 0.467 3.533 9 O -0.542 6.542 10 N -0.372 5.372 11 C -0.463 4.463 12 H 0.110 0.890 13 C 0.209 3.791 14 N -0.689 5.689 15 Si 0.824 3.176 16 H -0.260 1.260 17 H -0.289 1.289 18 H -0.265 1.265 19 C 0.110 3.890 20 C 0.443 3.557 21 O -0.488 6.488 22 O -0.367 6.367 23 C 0.036 3.964 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.240 0.760 30 H 0.286 0.714 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 8.036 6.601 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.108 4.108 4 N -0.212 5.212 5 C -0.089 4.089 6 O -0.094 6.094 7 C -0.098 4.098 8 C 0.262 3.738 9 O -0.430 6.430 10 N -0.087 5.087 11 C -0.580 4.580 12 H 0.127 0.873 13 C -0.026 4.026 14 N -0.308 5.308 15 Si 0.644 3.356 16 H -0.185 1.185 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.016 4.016 20 C 0.284 3.716 21 O -0.373 6.373 22 O -0.284 6.284 23 C -0.058 4.058 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.256 0.744 30 H 0.098 0.902 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.517 6.991 6.894 10.136 hybrid contribution 1.428 -0.085 -0.251 1.453 sum 3.945 6.906 6.643 10.363 Atomic orbital electron populations 1.21601 0.94745 1.01258 1.01614 1.19922 0.95975 0.88516 1.03263 1.21589 1.04265 0.98527 0.86377 1.70068 1.15835 1.03108 1.32175 1.27742 1.02949 0.97946 0.80268 1.84595 1.66040 1.34912 1.23896 1.23880 1.05145 0.83248 0.97555 1.15744 0.90774 0.87227 0.80009 1.90672 1.55112 1.18860 1.78335 1.43359 1.52663 1.06210 1.06461 1.18273 1.66359 0.92349 0.80977 0.87283 1.24881 0.95262 0.95969 0.86533 1.70483 1.26990 1.12974 1.20340 0.87918 0.88265 0.79795 0.79596 1.18457 1.21503 1.18884 1.21387 0.88171 0.88489 1.03576 1.24909 0.92236 0.81032 0.73470 1.90680 1.62269 1.37058 1.47308 1.86521 1.27020 1.35639 1.79178 1.23127 0.79134 1.02729 1.00787 0.92034 0.92663 0.93588 0.88354 0.91707 0.74411 0.90242 0.86258 0.87039 0.92316 0.88686 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.89 37.16 0.37 -2.01 16 2 C -0.04 -0.77 5.95 -27.88 -0.17 -0.94 16 3 C 0.02 0.34 6.42 -82.44 -0.53 -0.19 16 4 N -0.48 -9.22 11.26 -10.85 -0.12 -9.34 16 5 C 0.14 2.19 13.21 52.25 0.69 2.88 16 6 O -0.21 -3.93 6.52 4.28 0.03 -3.90 16 7 C -0.04 -0.96 6.67 -36.86 -0.25 -1.21 16 8 C 0.47 11.96 6.93 -12.89 -0.09 11.87 16 9 O -0.54 -15.10 11.37 5.16 0.06 -15.04 16 10 N -0.37 -9.10 2.19 -117.62 -0.26 -9.36 16 11 C -0.46 -12.17 9.45 -15.01 -0.14 -12.31 16 12 H 0.11 2.76 7.98 -52.49 -0.42 2.34 16 13 C 0.21 5.61 3.07 -17.45 -0.05 5.55 16 14 N -0.69 -18.34 13.66 55.50 0.76 -17.58 16 15 Si 0.82 21.25 28.18 -169.99 -4.79 16.46 16 16 H -0.26 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.26 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.11 2.12 5.58 -5.19 -0.03 2.09 16 20 C 0.44 8.69 6.36 36.01 0.23 8.92 16 21 O -0.49 -11.54 16.00 -18.75 -0.30 -11.84 16 22 O -0.37 -5.84 10.57 -39.28 -0.41 -6.26 16 23 C 0.04 0.46 10.56 101.05 1.07 1.53 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.19 6.43 -51.93 -0.33 1.85 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.24 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.29 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.12 1.97 7.93 -51.93 -0.41 1.56 16 32 H 0.11 1.94 5.98 -51.93 -0.31 1.63 16 33 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -33.28 306.81 -3.31 -36.59 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.99 Total: -0.53 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 1.10 Total: 16.19 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.38 Total: -36.28 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.63 Total: -37.05 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.79 Total: 16.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.28 -3.31 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335805893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.559 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds