Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34777 * 116.99512 * 2 1 4 4 O 1.21533 * 120.00271 * 359.97438 * 3 2 1 5 5 C 1.47277 * 119.99694 * 180.02562 * 3 2 1 6 6 C 1.36175 * 126.45656 * 179.97438 * 5 3 2 7 7 O 1.34234 * 106.94060 * 179.97438 * 6 5 3 8 8 C 1.34058 * 108.23683 * 0.02562 * 7 6 5 9 9 C 1.50704 * 125.36561 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.46896 * 269.97193 * 9 8 7 11 11 C 1.34781 * 120.00189 * 179.97438 * 10 9 8 12 12 O 1.21288 * 119.99702 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00102 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.47144 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47144 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46681 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47260 * 119.99920 * 19 17 15 22 22 H 1.48499 * 109.47301 * 240.00692 * 19 17 15 23 23 N 1.29915 * 109.26597 * 359.97438 * 8 7 6 24 24 H 1.09004 * 109.47013 * 300.00007 * 1 2 3 25 25 H 1.08997 * 109.47218 * 60.00495 * 1 2 3 26 26 H 1.09003 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.08003 * 126.52996 * 359.71430 * 6 5 3 28 28 H 1.09004 * 109.47261 * 29.96675 * 9 8 7 29 29 H 1.08999 * 109.47133 * 149.97075 * 9 8 7 30 30 H 0.97005 * 120.00213 * 0.02562 * 10 9 8 31 31 H 1.08998 * 109.47787 * 299.99928 * 13 11 10 32 32 H 1.09007 * 109.47061 * 60.00494 * 13 11 10 33 33 H 1.09001 * 109.47346 * 300.00668 * 14 13 11 34 34 H 1.08999 * 109.46766 * 60.00100 * 14 13 11 35 35 H 0.97006 * 120.00166 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2202 -0.0005 5 6 3.5345 1.2780 -0.0006 6 6 4.2852 2.4142 -0.0011 7 8 5.5722 2.0326 -0.0009 8 6 5.6125 0.6926 -0.0009 9 6 6.8671 -0.1423 -0.0001 10 7 7.2740 -0.4134 -1.3811 11 6 8.3775 -1.1472 -1.6268 12 8 9.0340 -1.5827 -0.7045 13 6 8.7958 -1.4266 -3.0473 14 6 10.0703 -2.2731 -3.0466 15 6 10.4889 -2.5519 -4.4671 16 1 9.9046 -2.1639 -5.2884 17 6 11.6184 -3.3016 -4.7185 18 7 12.3302 -3.7738 -3.7185 19 14 12.1378 -3.6467 -6.4794 20 1 11.1759 -3.0079 -7.4133 21 1 13.4957 -3.0928 -6.7126 22 1 12.1546 -5.1133 -6.7121 23 7 4.3995 0.2273 -0.0004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9156 3.4290 -0.0056 28 1 7.6626 0.3976 0.5137 29 1 6.6764 -1.0842 0.5141 30 1 6.7497 -0.0642 -2.1187 31 1 8.0005 -1.9671 -3.5607 32 1 8.9859 -0.4847 -3.5620 33 1 10.8654 -1.7323 -2.5334 34 1 9.8806 -3.2149 -2.5318 35 1 13.1247 -4.3015 -3.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349636729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = -102.190091 kcal Electronic energy + Delta-G solvation = -20609.172665 eV Core-core repulsion = 16995.407971 eV Total energy + Delta-G solvation = -3613.764694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.00612 -40.63396 -39.26745 -36.92517 -35.56638 -34.86699 -33.48189 -31.59542 -30.80138 -28.47828 -27.49032 -25.33963 -24.80483 -22.29949 -21.65421 -21.12087 -19.86757 -18.82335 -17.61125 -17.49578 -16.95661 -16.84228 -16.60922 -15.90965 -15.61126 -15.33548 -14.58188 -14.41476 -14.04241 -13.79453 -13.77385 -13.37385 -13.12559 -12.52993 -12.20109 -12.08384 -11.88751 -11.36656 -11.23316 -11.19954 -11.18934 -10.95428 -10.59420 -9.99225 -9.83868 -9.69143 -9.22306 -9.06295 -9.05324 -8.33511 -5.97431 -4.01772 0.41527 1.26809 1.91846 2.19035 2.52756 3.10778 3.24553 3.32298 3.39517 3.42596 3.55590 4.14087 4.29061 4.46821 4.69823 4.78698 4.88251 4.91190 5.09431 5.15911 5.27362 5.37841 5.45334 5.60862 5.81635 6.17862 6.19531 6.38045 6.83726 6.89418 7.27512 7.65222 7.73344 7.83559 8.05071 8.35751 8.61073 9.06617 9.61999 11.13507 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002560 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.078031 B =10935.122855 C =11327.559923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.558 3.442 4 O -0.503 6.503 5 C -0.065 4.065 6 C 0.039 3.961 7 O -0.183 6.183 8 C 0.192 3.808 9 C 0.217 3.783 10 N -0.743 5.743 11 C 0.517 3.483 12 O -0.528 6.528 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.424 5.424 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.237 0.763 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.402 0.598 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.659 12.690 8.174 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.402 3.598 4 O -0.391 6.391 5 C -0.184 4.184 6 C -0.036 4.036 7 O -0.067 6.067 8 C -0.017 4.017 9 C 0.092 3.908 10 N -0.400 5.400 11 C 0.306 3.694 12 O -0.402 6.402 13 C -0.168 4.168 14 C -0.002 4.002 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.154 5.154 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.254 0.746 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.236 0.764 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.367 11.883 8.909 26.021 hybrid contribution -0.179 0.804 -1.242 1.491 sum -21.546 12.687 7.666 26.153 Atomic orbital electron populations 1.23391 0.75423 1.04299 1.02728 1.86686 1.23686 1.31285 1.83344 1.19370 0.86023 0.81971 0.72418 1.90903 1.65608 1.36012 1.46607 1.20622 0.92683 0.90120 1.14958 1.25416 0.79582 1.00887 0.97696 1.84503 1.28374 1.25741 1.68123 1.26440 0.96087 0.78200 1.01018 1.19575 0.86971 0.97059 0.87165 1.46236 1.29992 1.57409 1.06359 1.21652 0.78240 0.75888 0.93665 1.90700 1.52768 1.49978 1.46766 1.21893 1.02705 1.02729 0.89476 1.18928 0.89581 0.94740 0.96922 1.21245 1.09960 1.33115 0.92195 0.92523 1.25027 0.96528 0.95839 0.97018 1.70006 1.16784 1.35484 1.30520 0.86533 0.78464 0.77997 0.84943 1.19758 1.21029 1.21006 1.70955 0.98966 1.30481 1.15014 0.91606 0.91547 0.87528 0.74645 0.88178 0.86845 0.76401 0.89913 0.89985 0.95710 0.95670 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.34 -3.52 10.58 -40.70 -0.43 -3.95 16 3 C 0.56 6.09 7.96 34.40 0.27 6.36 16 4 O -0.50 -5.85 16.68 -19.29 -0.32 -6.17 16 5 C -0.07 -0.69 7.04 -83.04 -0.58 -1.28 16 6 C 0.04 0.31 11.95 29.99 0.36 0.66 16 7 O -0.18 -1.68 10.72 6.55 0.07 -1.61 16 8 C 0.19 2.04 7.67 -13.09 -0.10 1.94 16 9 C 0.22 2.43 6.30 -5.19 -0.03 2.40 16 10 N -0.74 -9.66 5.55 -61.47 -0.34 -10.00 16 11 C 0.52 9.26 7.83 -10.99 -0.09 9.17 16 12 O -0.53 -11.60 15.98 5.55 0.09 -11.51 16 13 C -0.13 -2.48 5.64 -27.88 -0.16 -2.64 16 14 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 15 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 N -0.42 -5.09 11.36 -7.67 -0.09 -5.18 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.24 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.40 4.33 8.46 -40.82 -0.35 3.99 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -35.79 324.55 -4.32 -40.11 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.11 Total: -1.93 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 0.21 Total: 5.27 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.31 Total: -41.55 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.59 Total: -23.24 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.79 -4.32 -40.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349636729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.080 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds