Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34777 * 116.99512 * 2 1 4 4 O 1.21533 * 120.00271 * 359.97438 * 3 2 1 5 5 C 1.47277 * 119.99694 * 180.02562 * 3 2 1 6 6 C 1.36175 * 126.45656 * 179.97438 * 5 3 2 7 7 O 1.34234 * 106.94060 * 179.97438 * 6 5 3 8 8 C 1.34058 * 108.23683 * 0.02562 * 7 6 5 9 9 C 1.50704 * 125.36561 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.46896 * 269.97193 * 9 8 7 11 11 C 1.34781 * 120.00189 * 179.97438 * 10 9 8 12 12 O 1.21288 * 119.99702 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00102 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.47144 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47144 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46681 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47260 * 119.99920 * 19 17 15 22 22 H 1.48499 * 109.47301 * 240.00692 * 19 17 15 23 23 N 1.29915 * 109.26597 * 359.97438 * 8 7 6 24 24 H 1.09004 * 109.47013 * 300.00007 * 1 2 3 25 25 H 1.08997 * 109.47218 * 60.00495 * 1 2 3 26 26 H 1.09003 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.08003 * 126.52996 * 359.71430 * 6 5 3 28 28 H 1.09004 * 109.47261 * 29.96675 * 9 8 7 29 29 H 1.08999 * 109.47133 * 149.97075 * 9 8 7 30 30 H 0.97005 * 120.00213 * 0.02562 * 10 9 8 31 31 H 1.08998 * 109.47787 * 299.99928 * 13 11 10 32 32 H 1.09007 * 109.47061 * 60.00494 * 13 11 10 33 33 H 1.09001 * 109.47346 * 300.00668 * 14 13 11 34 34 H 1.08999 * 109.46766 * 60.00100 * 14 13 11 35 35 H 0.97006 * 120.00166 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2202 -0.0005 5 6 3.5345 1.2780 -0.0006 6 6 4.2852 2.4142 -0.0011 7 8 5.5722 2.0326 -0.0009 8 6 5.6125 0.6926 -0.0009 9 6 6.8671 -0.1423 -0.0001 10 7 7.2740 -0.4134 -1.3811 11 6 8.3775 -1.1472 -1.6268 12 8 9.0340 -1.5827 -0.7045 13 6 8.7958 -1.4266 -3.0473 14 6 10.0703 -2.2731 -3.0466 15 6 10.4889 -2.5519 -4.4671 16 1 9.9046 -2.1639 -5.2884 17 6 11.6184 -3.3016 -4.7185 18 7 12.3302 -3.7738 -3.7185 19 14 12.1378 -3.6467 -6.4794 20 1 11.1759 -3.0079 -7.4133 21 1 13.4957 -3.0928 -6.7126 22 1 12.1546 -5.1133 -6.7121 23 7 4.3995 0.2273 -0.0004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9156 3.4290 -0.0056 28 1 7.6626 0.3976 0.5137 29 1 6.6764 -1.0842 0.5141 30 1 6.7497 -0.0642 -2.1187 31 1 8.0005 -1.9671 -3.5607 32 1 8.9859 -0.4847 -3.5620 33 1 10.8654 -1.7323 -2.5334 34 1 9.8806 -3.2149 -2.5318 35 1 13.1247 -4.3015 -3.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349636729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = -131.015887 kcal Electronic energy + Delta-G solvation = -20610.422645 eV Core-core repulsion = 16995.407971 eV Total energy + Delta-G solvation = -3615.014674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.76464 -41.38980 -40.69475 -37.68204 -36.50551 -35.95652 -35.50226 -33.13711 -32.09973 -29.21225 -28.59936 -27.05614 -25.51208 -23.69930 -22.87169 -21.95908 -21.30317 -19.62028 -18.85710 -18.36031 -18.23197 -17.58532 -17.45735 -17.36188 -16.86278 -16.65606 -16.36339 -15.44831 -15.11112 -14.73013 -14.56360 -14.44018 -14.38163 -14.17029 -13.65573 -13.20237 -13.07623 -12.82551 -12.70715 -12.43138 -12.16781 -11.97498 -11.89754 -11.88809 -11.61509 -11.26097 -10.94874 -10.55220 -10.34511 -10.25478 -8.15627 -6.28756 -0.27739 0.42599 1.20912 1.44460 1.45294 1.48210 1.58480 1.67889 1.73860 2.26263 2.45928 2.61455 3.17840 3.47808 3.57782 3.98099 4.12653 4.22446 4.26233 4.31009 4.39383 4.49846 4.56305 4.60486 4.63259 4.71279 5.09485 5.11201 5.23374 5.54308 5.68235 5.89350 6.12970 6.20974 6.44738 6.52485 6.90034 7.24440 7.41281 8.97061 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002560 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.078031 B =10935.122855 C =11327.559923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.559 3.441 4 O -0.517 6.517 5 C -0.098 4.098 6 C 0.074 3.926 7 O -0.180 6.180 8 C 0.190 3.810 9 C 0.219 3.781 10 N -0.720 5.720 11 C 0.523 3.477 12 O -0.577 6.577 13 C -0.119 4.119 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.075 0.925 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.254 1.254 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.446 5.446 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.278 0.722 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.416 0.584 31 H 0.105 0.895 32 H 0.108 0.892 33 H -0.013 1.013 34 H -0.015 1.015 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.201 14.276 6.752 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.404 3.596 4 O -0.406 6.406 5 C -0.216 4.216 6 C 0.000 4.000 7 O -0.064 6.064 8 C -0.020 4.020 9 C 0.095 3.905 10 N -0.376 5.376 11 C 0.312 3.688 12 O -0.455 6.455 13 C -0.159 4.159 14 C 0.002 3.998 15 C -0.579 4.579 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.177 1.177 21 H -0.207 1.207 22 H -0.208 1.208 23 N -0.176 5.176 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.293 0.707 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.253 0.747 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.005 0.995 34 H 0.003 0.997 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.976 13.504 7.468 27.678 hybrid contribution 0.192 0.361 -0.736 0.842 sum -22.784 13.865 6.732 27.508 Atomic orbital electron populations 1.23680 0.73549 1.06029 1.03209 1.86668 1.25707 1.31340 1.83151 1.19447 0.86237 0.81932 0.72029 1.90884 1.65925 1.36251 1.47587 1.20803 0.92683 0.90752 1.17356 1.26198 0.78437 1.01687 0.93708 1.84527 1.29062 1.24917 1.67916 1.25999 0.95266 0.78713 1.01997 1.19556 0.87774 0.97456 0.85690 1.45851 1.28253 1.55441 1.08021 1.21248 0.79020 0.76101 0.92471 1.90691 1.54760 1.52330 1.47769 1.21648 1.00012 1.02922 0.91271 1.18721 0.91878 0.93636 0.95555 1.21748 1.10136 1.32710 0.93273 0.90677 1.26104 0.96713 0.95644 1.01987 1.70175 1.17506 1.36588 1.33427 0.85307 0.78263 0.77813 0.79057 1.17715 1.20693 1.20764 1.70886 0.99676 1.31726 1.15321 0.91069 0.91129 0.85279 0.70699 0.87113 0.87201 0.74682 0.87727 0.87419 0.99491 0.99663 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -7.16 10.58 -56.88 -0.60 -7.76 16 3 C 0.56 11.55 7.96 70.20 0.56 12.11 16 4 O -0.52 -11.28 16.68 19.73 0.33 -10.95 16 5 C -0.10 -1.91 7.04 40.38 0.28 -1.62 16 6 C 0.07 0.94 11.95 67.34 0.80 1.75 16 7 O -0.18 -2.82 10.72 0.53 0.01 -2.82 16 8 C 0.19 3.70 7.67 88.39 0.68 4.38 16 9 C 0.22 4.67 6.30 85.64 0.54 5.21 16 10 N -0.72 -17.62 5.55 -466.78 -2.59 -20.21 16 11 C 0.52 18.57 7.83 87.65 0.69 19.25 16 12 O -0.58 -26.09 15.98 -3.05 -0.05 -26.14 16 13 C -0.12 -4.50 5.64 29.85 0.17 -4.33 16 14 C 0.04 2.15 4.26 29.85 0.13 2.27 16 15 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 16 H 0.08 3.83 7.74 -2.91 -0.02 3.80 16 17 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 18 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 20 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 N -0.45 -10.13 11.36 -293.09 -3.33 -13.46 16 24 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.28 0.97 8.06 -2.91 -0.02 0.95 16 28 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.42 7.94 8.46 -92.70 -0.78 7.16 16 31 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 33 H -0.01 -0.81 8.10 -2.39 -0.02 -0.83 16 34 H -0.02 -0.92 8.10 -2.39 -0.02 -0.94 16 35 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -80.17 324.55 2.16 -78.01 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.35 Total: 5.24 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.74 Total: 10.63 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -5.63 Total: -92.13 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.32 Total: -47.67 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -80.17 2.16 -78.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349636729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.005 kcal (2) G-P(sol) polarization free energy of solvation -80.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds