Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35545 * 117.00080 * 2 1 4 4 C 1.39203 * 120.44317 * 180.02562 * 3 2 1 5 5 C 1.39202 * 118.41584 * 180.02562 * 4 3 2 6 6 O 1.35548 * 120.44850 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00528 * 179.97438 * 6 5 4 8 8 N 1.32733 * 119.11425 * 359.97438 * 5 4 3 9 9 C 1.32453 * 120.81264 * 0.02562 * 8 5 4 10 10 C 1.48473 * 119.13562 * 180.02562 * 9 8 5 11 11 O 1.21374 * 119.99831 * 359.97438 * 10 9 8 12 12 O 1.34632 * 119.99888 * 179.97438 * 10 9 8 13 13 C 1.45194 * 117.00088 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47032 * 30.00460 * 13 12 10 15 15 C 1.53004 * 109.47495 * 270.00336 * 13 12 10 16 16 C 1.50697 * 109.47397 * 149.99927 * 13 12 10 17 17 H 1.07999 * 120.00158 * 5.35345 * 16 13 12 18 18 C 1.37881 * 120.00462 * 185.35117 * 16 13 12 19 19 N 1.31519 * 119.99492 * 5.14741 * 18 16 13 20 20 Si 1.86797 * 120.00069 * 185.14791 * 18 16 13 21 21 H 1.48501 * 109.47243 * 85.00288 * 20 18 16 22 22 H 1.48507 * 109.46766 * 204.99906 * 20 18 16 23 23 H 1.48491 * 109.47366 * 324.99740 * 20 18 16 24 24 N 1.32449 * 121.72775 * 0.27151 * 9 8 5 25 25 H 1.09005 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46936 * 299.99934 * 1 2 3 27 27 H 1.09001 * 109.47449 * 59.99900 * 1 2 3 28 28 H 1.07994 * 120.79524 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47260 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.46571 * 299.99823 * 7 6 5 31 31 H 1.08998 * 109.46959 * 59.99634 * 7 6 5 32 32 H 1.09006 * 109.46600 * 294.96841 * 15 13 12 33 33 H 1.08998 * 109.47127 * 54.96941 * 15 13 12 34 34 H 1.08996 * 109.47228 * 174.96941 * 15 13 12 35 35 H 0.97003 * 119.99628 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4339 1.2913 -0.0005 5 6 4.0216 2.5532 0.0000 6 8 5.3709 2.6825 -0.0010 7 6 5.8953 4.0118 -0.0009 8 7 3.2430 3.6282 0.0005 9 6 1.9238 3.5104 0.0010 10 6 1.0885 4.7379 0.0010 11 8 1.6161 5.8310 0.0010 12 8 -0.2542 4.6385 0.0010 13 6 -1.0071 5.8799 0.0015 14 1 -0.4346 6.6523 -0.5120 15 6 -1.2716 6.3155 1.4442 16 6 -2.3197 5.6717 -0.7089 17 1 -2.6020 4.6845 -1.0436 18 6 -3.1604 6.7416 -0.9318 19 7 -2.7739 7.9584 -0.6160 20 14 -4.8482 6.4628 -1.6821 21 1 -5.8141 6.1098 -0.6108 22 1 -5.2974 7.7029 -2.3646 23 1 -4.7749 5.3543 -2.6674 24 7 1.3301 2.3264 0.0064 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.0415 0.3985 -0.0014 29 1 6.9846 3.9726 -0.0022 30 1 5.5500 4.5386 -0.8904 31 1 5.5513 4.5380 0.8895 32 1 -1.9189 5.5859 1.9311 33 1 -0.3265 6.3797 1.9834 34 1 -1.7578 7.2910 1.4459 35 1 -3.3655 8.7111 -0.7724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516626400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = -100.058430 kcal Electronic energy + Delta-G solvation = -21968.993200 eV Core-core repulsion = 18355.320943 eV Total energy + Delta-G solvation = -3613.672258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57795 -39.47140 -39.31849 -37.84413 -35.80145 -33.31245 -32.77838 -32.07910 -29.74191 -28.12055 -27.15289 -25.80542 -25.28385 -23.31459 -22.19187 -20.37640 -18.95177 -18.64678 -17.10941 -16.74328 -16.66571 -16.39849 -15.88040 -15.73266 -15.63721 -15.19407 -14.78520 -14.46531 -14.19414 -13.73124 -13.06899 -12.29731 -12.28517 -12.05761 -12.01678 -11.95025 -11.50498 -11.26762 -11.15354 -11.02789 -10.85624 -10.47358 -10.34091 -9.94216 -9.81506 -9.73047 -9.58759 -9.17932 -8.97720 -8.52131 -6.21491 -4.26410 0.38332 1.04489 2.26961 2.75495 2.80677 3.13962 3.25073 3.30537 3.34770 3.80911 3.86467 4.27263 4.54548 4.82748 4.91712 5.10969 5.13289 5.19091 5.21829 5.28631 5.31493 5.52222 5.56912 5.74826 6.52890 6.56909 6.74004 6.79376 6.80262 6.95419 7.00869 7.49605 7.60383 7.71298 7.83886 8.05816 8.50983 8.84067 9.38071 10.87965 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.004628 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.264806 B = 6049.037436 C = 7149.194171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.296 6.296 3 C 0.382 3.618 4 C -0.251 4.251 5 C 0.383 3.617 6 O -0.295 6.295 7 C 0.035 3.965 8 N -0.543 5.543 9 C 0.393 3.607 10 C 0.523 3.477 11 O -0.476 6.476 12 O -0.326 6.326 13 C 0.212 3.788 14 H 0.055 0.945 15 C -0.149 4.149 16 C -0.521 4.521 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.912 3.088 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.272 1.272 24 N -0.538 5.538 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.163 0.837 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.019 0.981 34 H 0.086 0.914 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.701 -13.179 1.884 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.200 6.200 3 C 0.197 3.803 4 C -0.275 4.275 5 C 0.199 3.801 6 O -0.200 6.200 7 C -0.060 4.060 8 N -0.280 5.280 9 C 0.123 3.877 10 C 0.361 3.639 11 O -0.361 6.361 12 O -0.240 6.240 13 C 0.160 3.840 14 H 0.073 0.927 15 C -0.207 4.207 16 C -0.559 4.559 17 H 0.089 0.911 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.738 3.262 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.196 1.196 24 N -0.274 5.274 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.181 0.819 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.531 -12.311 1.886 16.973 hybrid contribution -0.549 -0.332 -0.335 0.724 sum 10.982 -12.643 1.551 16.818 Atomic orbital electron populations 1.23091 0.75531 1.03476 1.04019 1.86206 1.24208 1.23009 1.86618 1.19633 0.88405 0.85129 0.87084 1.20785 0.92788 0.98237 1.15687 1.19502 0.84856 0.88290 0.87501 1.86220 1.14654 1.32273 1.86817 1.23054 0.98716 0.80555 1.03686 1.67834 1.05957 1.32711 1.21462 1.21285 0.85901 0.89824 0.90660 1.19801 0.83555 0.85415 0.75149 1.90814 1.74476 1.26923 1.43880 1.86645 1.14688 1.42035 1.80598 1.20837 0.89884 0.78483 0.94788 0.92729 1.22102 0.98774 1.03047 0.96740 1.20954 1.01037 0.95672 1.38251 0.91080 1.24895 0.99018 0.94550 0.95356 1.69959 1.36695 0.98506 1.47367 0.86291 0.82889 0.77734 0.79240 1.20237 1.21035 1.19639 1.68236 1.40603 0.98008 1.20576 0.88054 0.91245 0.91175 0.81914 0.88006 0.91435 0.91468 0.93841 0.96148 0.89532 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.41 101.05 1.05 1.41 16 2 O -0.30 -3.69 10.49 -18.33 -0.19 -3.88 16 3 C 0.38 5.52 7.52 -16.80 -0.13 5.39 16 4 C -0.25 -3.20 10.09 -38.87 -0.39 -3.59 16 5 C 0.38 5.46 7.52 -16.80 -0.13 5.33 16 6 O -0.30 -3.56 10.49 -18.34 -0.19 -3.75 16 7 C 0.03 0.34 10.41 101.05 1.05 1.39 16 8 N -0.54 -9.40 9.06 -11.25 -0.10 -9.50 16 9 C 0.39 7.50 7.60 -157.12 -1.19 6.31 16 10 C 0.52 11.79 7.96 34.95 0.28 12.07 16 11 O -0.48 -11.62 16.12 -19.17 -0.31 -11.93 16 12 O -0.33 -7.94 9.66 -40.31 -0.39 -8.33 16 13 C 0.21 5.67 2.43 -27.88 -0.07 5.60 16 14 H 0.05 1.60 7.14 -51.93 -0.37 1.23 16 15 C -0.15 -3.69 9.32 37.16 0.35 -3.34 16 16 C -0.52 -14.48 8.83 -34.44 -0.30 -14.79 16 17 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 18 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 19 N -0.89 -25.10 11.98 55.43 0.66 -24.43 16 20 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 N -0.54 -9.39 9.10 -11.25 -0.10 -9.49 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 27 H 0.07 0.82 8.12 -51.93 -0.42 0.39 16 28 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 2.26 6.84 -51.93 -0.36 1.90 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -31.19 318.35 -4.49 -35.68 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -4.07 Total: -2.46 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 0.42 Total: 17.45 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.46 Total: -43.43 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.08 Total: -27.90 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.19 -4.49 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516626400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.374 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds