Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35546 * 117.00163 * 2 1 4 4 C 1.39205 * 120.44562 * 180.02562 * 3 2 1 5 5 C 1.39200 * 118.41541 * 180.23189 * 4 3 2 6 6 O 1.35555 * 120.44131 * 179.72432 * 5 4 3 7 7 C 1.42898 * 116.99424 * 179.97438 * 6 5 4 8 8 N 1.32731 * 119.11459 * 359.50109 * 5 4 3 9 9 C 1.32447 * 120.81134 * 0.48698 * 8 5 4 10 10 C 1.48476 * 119.13555 * 179.75036 * 9 8 5 11 11 O 1.21377 * 119.99984 * 180.02562 * 10 9 8 12 12 O 1.34638 * 119.99613 * 0.02562 * 10 9 8 13 13 C 1.45201 * 116.99819 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47115 * 330.00668 * 13 12 10 15 15 C 1.52998 * 109.47179 * 90.00455 * 13 12 10 16 16 C 1.50692 * 109.47175 * 210.00437 * 13 12 10 17 17 H 1.08008 * 120.00420 * 0.02562 * 16 13 12 18 18 C 1.37884 * 120.00110 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99693 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 120.00042 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47594 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47299 * 120.00351 * 20 18 16 23 23 H 1.48502 * 109.46886 * 239.99898 * 20 18 16 24 24 N 1.32447 * 121.73242 * 359.77129 * 9 8 5 25 25 H 1.08998 * 109.47558 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47309 * 299.99920 * 1 2 3 27 27 H 1.08999 * 109.47537 * 59.99493 * 1 2 3 28 28 H 1.08002 * 120.78793 * 359.94564 * 4 3 2 29 29 H 1.08991 * 109.47644 * 299.99791 * 7 6 5 30 30 H 1.08997 * 109.46905 * 60.00850 * 7 6 5 31 31 H 1.09003 * 109.46482 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47081 * 59.99836 * 15 13 12 33 33 H 1.08993 * 109.47200 * 180.02562 * 15 13 12 34 34 H 1.09004 * 109.46955 * 300.00312 * 15 13 12 35 35 H 0.97006 * 119.99813 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4339 1.2913 -0.0005 5 6 4.0215 2.5532 0.0044 6 8 5.3709 2.6824 0.0097 7 6 5.8952 4.0117 0.0141 8 7 3.2430 3.6282 -0.0006 9 6 1.9238 3.5104 -0.0006 10 6 1.0885 4.7379 -0.0006 11 8 -0.1220 4.6483 -0.0001 12 8 1.6738 5.9504 -0.0013 13 6 0.7952 7.1065 -0.0007 14 1 -0.1337 6.8571 -0.5137 15 6 0.4878 7.5128 1.4419 16 6 1.4702 8.2507 -0.7119 17 1 2.4604 8.1220 -1.1236 18 6 0.8238 9.4622 -0.8371 19 7 -0.3821 9.6189 -0.3363 20 14 1.6603 10.8804 -1.7192 21 1 3.0022 10.4498 -2.1875 22 1 0.8376 11.2928 -2.8847 23 1 1.8064 12.0265 -0.7863 24 7 1.3301 2.3265 0.0000 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 4.0414 0.3984 -0.0001 29 1 5.5540 4.5398 -0.8762 30 1 5.5473 4.5366 0.9037 31 1 6.9845 3.9725 0.0186 32 1 1.4166 7.7621 1.9549 33 1 -0.1720 8.3803 1.4423 34 1 -0.0004 6.6850 1.9563 35 1 -0.8367 10.4713 -0.4240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516626407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -98.768837 kcal Electronic energy + Delta-G solvation = -21973.329881 eV Core-core repulsion = 18359.713544 eV Total energy + Delta-G solvation = -3613.616337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57980 -39.47253 -39.31961 -37.84574 -35.80716 -33.36070 -32.78464 -32.08123 -29.64763 -28.12132 -27.15049 -25.79967 -25.31427 -23.31551 -22.17684 -20.36670 -18.95320 -18.64782 -17.10505 -16.74518 -16.67100 -16.41442 -15.88141 -15.73183 -15.63357 -15.18930 -14.79638 -14.48464 -14.19744 -13.72836 -13.07603 -12.28719 -12.28084 -12.05076 -11.99927 -11.94979 -11.48054 -11.24752 -11.14369 -11.05314 -10.86851 -10.39067 -10.30801 -9.94605 -9.81595 -9.73294 -9.61435 -9.18082 -8.94383 -8.52296 -6.20828 -4.27409 0.38140 1.04325 2.26848 2.75230 2.80524 3.13837 3.23120 3.30399 3.36166 3.80693 3.86346 4.26582 4.54452 4.82644 4.91563 5.10749 5.12800 5.18793 5.21890 5.28488 5.31656 5.52315 5.57050 5.74999 6.54243 6.57418 6.74051 6.83300 6.85898 6.96239 7.02896 7.51393 7.66435 7.71978 7.88353 8.08287 8.51033 8.82931 9.37662 10.86846 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.004615 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.015790 B = 6065.259289 C = 7152.357631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.295 6.295 3 C 0.383 3.617 4 C -0.251 4.251 5 C 0.382 3.618 6 O -0.296 6.296 7 C 0.033 3.967 8 N -0.538 5.538 9 C 0.393 3.607 10 C 0.523 3.477 11 O -0.476 6.476 12 O -0.325 6.325 13 C 0.213 3.787 14 H 0.050 0.950 15 C -0.156 4.156 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 N -0.543 5.543 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.163 0.837 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.102 0.898 34 H 0.017 0.983 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 -15.833 1.367 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.200 6.200 3 C 0.198 3.802 4 C -0.275 4.275 5 C 0.197 3.803 6 O -0.200 6.200 7 C -0.061 4.061 8 N -0.274 5.274 9 C 0.123 3.877 10 C 0.361 3.639 11 O -0.362 6.362 12 O -0.239 6.239 13 C 0.161 3.839 14 H 0.067 0.933 15 C -0.213 4.213 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.740 3.260 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 N -0.280 5.280 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.036 0.964 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.051 -15.348 1.384 16.946 hybrid contribution 0.492 0.344 -0.377 0.709 sum 7.543 -15.004 1.007 16.823 Atomic orbital electron populations 1.23053 0.75837 1.03441 1.03683 1.86219 1.23976 1.22944 1.86817 1.19502 0.88360 0.84785 0.87505 1.20788 0.92656 0.98370 1.15677 1.19636 0.85068 0.88468 0.87082 1.86209 1.14661 1.32552 1.86619 1.23091 0.98672 0.80334 1.04023 1.68237 1.06251 1.32358 1.20564 1.21283 0.85532 0.90195 0.90671 1.19802 0.85133 0.83835 0.75137 1.90812 1.14106 1.87313 1.43926 1.86652 1.43203 1.13502 1.80584 1.20842 0.89788 0.78128 0.95102 0.93257 1.22180 1.01098 1.01754 0.96298 1.21037 1.03575 0.94702 1.36351 0.91023 1.24882 0.94951 0.98528 0.95575 1.69905 1.12544 1.25446 1.44775 0.86197 0.79514 0.81162 0.79133 1.19433 1.20747 1.20704 1.67831 1.40876 0.97794 1.21466 0.88005 0.91473 0.91437 0.81909 0.91159 0.91257 0.88051 0.94187 0.87997 0.96409 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.41 101.05 1.05 1.39 16 2 O -0.30 -3.56 10.49 -18.33 -0.19 -3.75 16 3 C 0.38 5.46 7.52 -16.80 -0.13 5.33 16 4 C -0.25 -3.20 10.09 -38.87 -0.39 -3.59 16 5 C 0.38 5.52 7.52 -16.81 -0.13 5.40 16 6 O -0.30 -3.70 10.49 -18.36 -0.19 -3.89 16 7 C 0.03 0.36 10.41 101.05 1.05 1.41 16 8 N -0.54 -9.40 9.10 -11.25 -0.10 -9.50 16 9 C 0.39 7.50 7.60 -157.12 -1.19 6.31 16 10 C 0.52 11.80 7.97 34.95 0.28 12.08 16 11 O -0.48 -11.62 16.12 -19.17 -0.31 -11.93 16 12 O -0.33 -7.96 9.66 -40.33 -0.39 -8.35 16 13 C 0.21 5.72 2.56 -27.89 -0.07 5.65 16 14 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 15 C -0.16 -3.92 9.33 37.16 0.35 -3.57 16 16 C -0.52 -14.42 8.90 -34.44 -0.31 -14.73 16 17 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 20 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 N -0.54 -9.40 9.06 -11.25 -0.10 -9.50 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -31.08 317.14 -4.52 -35.60 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.03 Total: -2.27 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 0.42 Total: 17.28 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.42 Total: -43.31 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.08 Total: -27.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.08 -4.52 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516626407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.170 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds